BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14280.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920316 jgi|Araly1|920316|scaffold_101597.1 2143 0.0
Ahg484204 jgi|Araly1|484204|fgenesh2_kg.5__196__AT2G02950.1 147 3e-34
> Ahg920316 jgi|Araly1|920316|scaffold_101597.1
Length=1382
Score = 2143 bits (1160), Expect = 0.0
Identities = 1309/1379 (95%), Gaps = 18/1379 (1%)
Strand=Plus/Plus
Query 10 TAATACACAAAAAGAA-ACAAAATGGTGACCTTAACTTCATCTTCTTCAACTCCAAACGT 68
||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 TAATACA-AAAAAGAAGAGAAAATGGTAACCTTAACTTCATCTTCTTCAACTCCAAATGT 59
Query 69 ATCTTTTGATTTCATGATGAACAATAATAATAACAGTAACAATCTCTATGGTCctttctc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATCTTTTGATTTCATGATGAACAATAATAATAACAGTAACAATCTCTATGGTCCTTTCTC 119
Query 129 ttcttcttctacttctttctcttACTTGACAAGCAAGGAAGATGCTCTCACCCAGAAGAA 188
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 120 TTCTTCTTCTACTTCTTTCTCTTACTTGACAAGCAAGGAAGATACTCTCACTCAGAAGAA 179
Query 189 CCTAATGAGTGGTAT---C----AC--CAAT---GATGTTCTTGGAATTAACAAGAAAGC 236
||||||||||||||| | || |||| |||||||||||| |||||||||||||
Sbjct 180 CCTAATGAGTGGTATCAACATGAACATCAATCCAGATGTTCTTGGAGTTAACAAGAAAGC 239
Query 237 TTCTGAAGATTTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGATATGGA 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCTGAAGATCTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGATATGGA 299
Query 297 TTCTGACCACAGTCCTAGACTTGTGTCTCCTCTGCCAGATCCAGAAGTTCCAATAGAGAG 356
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TTCCGACCACAGTCCTAGACTTGTGTCTTCTCTGCCAGATCCAGAAGTTCCAATAGAGAG 359
Query 357 AATCTTTGTTGGTCCGAAGCAAAGCTCGAAGAATTCCTCGGAAACTCCTAGTCTTCGGTC 416
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AATCTTTGTTCCTCCGAAGCAAAGCTCGAAGAATTCCTCGGAAACTCCGAGTCTTCGGTC 419
Query 417 TGAATCCAGTTGGAATAGCCAGAGTTTGTTGCTTCAGAGCAAATATGTAGAGAAGAAGAA 476
|||||| || |||||||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 420 TGAATCTAGCTGGAATAGCCAGAGCTTGTTGCTTCAGAATAAATATATGGAGAAGAAGAA 479
Query 477 GAACATCAAGAAAAACTCTAGTTGCAACAGTTACTTTCAGGAGAAGGATATGAGTAGCAA 536
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GAACATCAAGAACAACTCTAGCTGCAACAGTTACTTTCAGGAGAAGGATATAAGTAGCAA 539
Query 537 TCACAAGGTGAGTAATAAGAAGAGTTTTCTCGCTACTCTTGGCTGCAGATGCGTGTGTTC 596
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 540 TCACAAGGTGAGTAATAAGAAGAGTTTTCTTGCTACTCTTGGCTGCAGATGTGTGTGTTC 599
Query 597 GAACTGGAGTTCAGTGGATGTCGTCGACGACAAGAGAAGAAGCTCTGGTCTGAAGAAGAT 656
||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 600 GAACTGGAGTTCAGTAGATGTTGTCGATGAGAAGAGAAGAAGCTCTGGTCTGAAGAAGAT 659
Query 657 CAAGACTCAATTGAGTTTCTCTGGAGATCTAAGCTCGGAGATGAAGATTCATCAACAACA 716
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAGGACTCAGTTGAGTTTCTCTGGAGATCTAAGCTCGGAGATGAAGATTCATCAACAACA 719
Query 717 ACAAGAAGCAATGCTAGAGCAGAGGAAGTCTCTGGAAATATTTGGATCTCCTCTTATTGA 776
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACAAGAAGCAATGTTAGAGCAGAGGAAGTCTCTGGAAATATTTGGATCTCCTCTTATTGA 779
Query 777 GAAGAGAATCATTCAGAAGAAATTTCCATGGGAATACTCGAGCTCTGCGAAAAAAGAAGA 836
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 780 GAAGAGAATCATTCAGAAGAAATTCCCATGGGAATACTCGAGCTCTGCGAAAAAAGAGGA 839
Query 837 ACATGGATTCTCTGTGAAGTATGAAGAAGAAGAAGATGGGAGTGTGAGCGATGTAAGTAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATGGATTCTCTGTGAAGTATGAAGAAGAAGAAGATGGGAGTGTGAGCGATGTAAGTAC 899
Query 897 GGATCTTTTTGAGATTGAGAGCTTAACAGGGAAGGCAAA-CCCTTTTCTTGCAAGGCAAG 955
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 900 GGATCTTTTTGAGATTGAGAGCTTAACAGGGAAGGCAAAGCCCTTT-CTTGCAAGGCAAG 958
Query 956 GAAGTAGTGATCCAGACTCACCAGA-TGGTTATGCACCAAGTGAGGTAAGCATACAATGG 1014
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 959 GAAGTAGTGATCCAGACTCACC-GAATGGTTATGCACCAAGTGAGGTAAGCATACAGTGG 1017
Query 1015 AGTGTAGTGACAGCAAGTGTAGCAGATTTCTCTGTTATGTCTGAATGTGCTACGAGTCCC 1074
|||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1018 AGTGTAGTAACGGCAAGTGTAGCGGATTTCTCTGTTATGTCTGAATGTGCAACGAGTCCT 1077
Query 1075 GTCAAAAAGAACCGGTCTTTTCAGATTCCTCGAATCCCTATCATGGCAAAATCAAACCGA 1134
||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 1078 GTCAAAAAGAACCGGTCTTTTCAGATTCCTCGAATTCCTATCATGGCGAAATTAAACCGA 1137
Query 1135 GAAATCGCGCCTCAGAGACGGAAATCTAGCAGTAGCGGTTTATTAATGGGATGCAAGAGT 1194
|||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1138 GAAACCGCGCCTCAGAGACGGAAATCGAGCAGTGGCGGTTTATTAATGGGATGCAAGAGT 1197
Query 1195 CATAAATCTGTCAGAGTTTCTGGTGATTCATACACAAGCATGAACAGAACACCGAGCTAT 1254
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1198 CATAAATCTGTCAGAGTTTCTGGTGATTCGTACACAAGCATGAACAGAACACCGAGTTAT 1257
Query 1255 GTTCCAAGATTCCCTGTAGAAGCTAATCCAACAAGCACTGAAACAAGAAGGAGGATCAGC 1314
|||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1258 GTTCCAAGATTCCCCGTAGAAGCTAATCCAACAAGCATTGAGACAAGAAGGAGGATCAGC 1317
Query 1315 AGTAGTTCTGTTTCTCACACGCAATCGCCTTTTTTGTATACTTAATTATGCCAAAAACC 1373
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 AGTAGTTCGGTTTCTCACACGCAATCGCCTTTTTTGTATACTTAATGATGCCAAAAACC 1376
> Ahg484204 jgi|Araly1|484204|fgenesh2_kg.5__196__AT2G02950.1
Length=1560
Score = 147 bits (79), Expect = 3e-34
Identities = 185/234 (79%), Gaps = 15/234 (6%)
Strand=Plus/Plus
Query 229 AAGAAAGCTTCTGAAGATTTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 288
||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 235 AAGAAAGCTACTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 294
Query 289 GATATGGATTCTGACCACAG-TCCTAGACTTGTGTCTCCTCTGCCAGATCCAGAAGTTCC 347
|| |||||||| ||||| || | |||| || |||||| | | || | |||||||||
Sbjct 295 GACATGGATTCAGACCA-AGGTTCTAGTGTTCTGTCTC-T--GACAAACCCAGAAGTT-- 348
Query 348 AATAGAGAGAATCTTTGTTGGTCCGAAGCAAAGCTCGAAGAATTC--CTCGGAAACTCCT 405
||||||| | | || | | ||||||| ||| ||||||| || || |||| | ||
Sbjct 349 ----GAGAGAACCATCGTCGATTCGAAGCAGAGCGCGAAGAAATCTACT-GGAACC-CCG 402
Query 406 AGTCTTCGGTCTGAATCCAGTTGGAATAGCCAGAGTTTGTTGCTTCAGAGCAAA 459
||| | ||||||||||| || |||||||| ||||| |||||||||||| ||||
Sbjct 403 AGTGTCCGGTCTGAATCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5