BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14340.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312432 jgi|Araly1|312432|fgenesh1_pm.C_scaffold_1001212 1083 0.0
> Ahg312432 jgi|Araly1|312432|fgenesh1_pm.C_scaffold_1001212
Length=1296
Score = 1083 bits (586), Expect = 0.0
Identities = 671/713 (94%), Gaps = 2/713 (0%)
Strand=Plus/Plus
Query 120 ATGGATCATCAATTTGGATATGGTGTTGAAGTTACTGGGTTATCTCCATCTGTTACTCAT 179
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCATCAATATGGATATGGTGTTGAAGTTACTGGGTTATCTCCATCTGTTACTCAG 60
Query 180 AATGATCTTATCGATTTCTTCTCTTTCTCTGGTACTATCCAAGATATTGATATTGTCAGG 239
|| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 61 AAAGATCTTATCGATTTCTTCTCTTTCTCTGGTGCAATCGAAGATATTGATATTGTCAGG 120
Query 240 TCGGGTGAGCAAGCTTGTACTGCTTATGTGATGTTTAAGGATTCTTATTCTCAAGAAACT 299
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCGGGTGAGCAAGCTTGCACTGCTTATGTGATGTTCAAGGATTCTTATTCTCAAGAAACT 180
Query 300 GCTGTTTTACTCACTGGCGCAACGATATTGGATCAGCGTGTTTGTATAACTCGTTGGGGA 359
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGTTTTACTCAGTGGCGCAACCATATTGGATCAGCGTGTTTGTATAACTCGTTGGGGA 240
Query 360 CAACATCACGAAGAGTTCGATTTCTGGAATGCGACTTCGCGAGGTTTTGAAGATGAATCG 419
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CAGCATCACGAAGAGTTCGATTTCTGGAATGCGACTTCGCAAGGTTTTGAAGATGAATCT 300
Query 420 GACTCACAACATTATGCTCAACGAAGCGAGTTCAACGCTGGAGAAGCAGTGACAAAAGCT 479
||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 301 AACTCACATCCTTATGCTCAACGAGGCGAGTTCAACGCTGGGGAAGCAGTGACAAAAGCT 360
Query 480 CAAGAAGTGGTGAAAATAATGCTTGCCACAGGATTCGTGCTAGGCAAAGACGCTTTAAGC 539
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CAAGAAGTGGTGAAAACAATGCTTGCCACAGGTTTCGTGCTAGGCAAAGACGCTTTAAGC 420
Query 540 AAAGCTAAAGCCTTTGATGAATCCCACGGCGTATCAGCTGCAGCGGTGGCTAGAGTATCT 599
||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||||
Sbjct 421 AAAGCTAAAGCCTTTGATGAATCTCACGGAGTATCAGCTGCGGCTGTAGCTAGAGTATCC 480
Query 600 CAACTAGAACAGAGGATTGGTCTTACTGACAAAATCTTTACCGGACTTGAAGCTGTTAGA 659
||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 481 CAATTAGAGCAGAGGATTGGTCTCACTGACAAAATCTTTACCGGACTTGAAGCTGTCCGA 540
Query 660 ATGACTGACCAAAGGTATCATGTTTCAGATACAGCTAAATCAGCTGTCTTTGCCACAGGA 719
||||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||||
Sbjct 541 ATGACTGACCAAAGGTACCATGTTTCAGACACGGCTAAATCAGCCGTCTTTGCTACAGGA 600
Query 720 AGAACCGCGGCAGCAGCTGCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCT 779
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAACCGCAGCAGCAGCTGCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCT 660
Query 780 CTTTGGCTGTCTGGTGCATTAGAGA-GAGCTGCTAAAGCCGCATCTGATCTCG 831
||||||||||| ||||| ||||| | ||||||||||||| |||||||||||||
Sbjct 661 CTTTGGCTGTCCGGTGCGTTAGA-ACGAGCTGCTAAAGCTGCATCTGATCTCG 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5