BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14400.1 Length=995 Score E Sequences producing significant alignments: (Bits) Value Ahg471614 jgi|Araly1|471614|fgenesh2_kg.1__1568__AT1G14400.1 1362 0.0 Ahg484183 jgi|Araly1|484183|fgenesh2_kg.5__175__AT2G02760.1 586 1e-166 Ahg315981 jgi|Araly1|315981|fgenesh1_pm.C_scaffold_2001014 261 7e-69 > Ahg471614 jgi|Araly1|471614|fgenesh2_kg.1__1568__AT1G14400.1 Length=927 Score = 1362 bits (737), Expect = 0.0 Identities = 842/891 (95%), Gaps = 13/891 (1%) Strand=Plus/Plus Query 72 AttttttttACCCATTTCTCTCATCGCACGGTG--AT--ATTGAGAATCGCCGACCTGAA 127 ||||||||| ||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 23 ATTTTTTTTTCCCATTTCTCTCATCGCACGGTGAAATAAATCGAGAATCGCCGACCTGAA 82 Query 128 TCGATCGGAAAACTTTCTCTGATTACCGGCGGTCAACACCGCTGAACACATATGTTTGTT 187 |||||||| | ||||||||| ||||||||||||| |||| ||||||| ||||||||| Sbjct 83 TCGATCGG-GTTC-TTCTCTGATCACCGGCGGTCAACGCCGC-GAACACAGATGTTTGTT 139 Query 188 TGACGACCTCTTCTCTCCGCGATC--TTTACCTCAACAACGAGATCTGTTTCCACGAAAG 245 ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| Sbjct 140 TGACGACCTCTTCTCGCCGTGATCTTTTTACCTCAACAACGAGATCTGTTTCCACGAAAG 199 Query 246 AAAGGAGGATGTCGACGCCAGCAAGGAAGAGGTTAATGAGGGATTTCAAGAGGTTGCAGC 305 || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 200 AACGGAGGATGTCGACGCCAGCTAGGAAGAGGTTGATGAGGGATTTCAAGAGGTTGCAGC 259 Query 306 AAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACATTATGCTCTGGAATG 365 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 260 AAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAATATCATGCTCTGGAATG 319 Query 366 CTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGC 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 CTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGC 379 Query 426 AGTTCTCTGAAGATTATCCCAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTC 485 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 380 AGTTCTCTGAAGATTATCCTAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTC 439 Query 486 ATCCTAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTC 545 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 ATCCAAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTC 499 Query 546 CAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATC 605 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 CAATATATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATC 559 Query 606 CGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGCGAGTACA 665 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 560 CGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGTGAGTACA 619 Query 666 ACAGGAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTAGTAGTTTGTTG 725 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 620 ACAGAAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTAGTAGTTTGATG 679 Query 726 TAAGCGTTGTAGCTCTCTCTACTTTCTCTCAATCACGATTCAGCAA--CAGCTTTCTTCT 783 |||||| ||||||||| ||| ||||||| ||||||| ||||||||| |||||||||||| Sbjct 680 TAAGCGATGTAGCTCTGTCTCCTTTCTCACAATCACAATTCAGCAAAACAGCTTTCTTCT 739 Query 784 CTTTTCATTCATGTCTTGTGTTTCCAAAACTATTTAAGTGATTCCATGCTTTGATGTAAC 843 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 740 CTTTTCATTCATGTCTTGTGTTTCCGAAACTATTTAAGTGATTCAATGCTTTGATGTAAC 799 Query 844 CCAACATCCTTaaaaaaaCAACTTTGTACCAAACCATCTGAATTATTCACTTTTGTGTAT 903 |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 800 TCAACATCCTTTAAAAAACAACTTTGTACCAAACCAACTGAATTATTCACTTTTGTGTAT 859 Query 904 ATATGTATTACGATTTACTTGCTAGCTACAAAAAACAAC-TTTGTACCCAA 953 |||||||||||||||| |||||||| ||| |||| ||| |||||| |||| Sbjct 860 ATATGTATTACGATTTTCTTGCTAGGTACCGAAAA-AACCTTTGTAACCAA 909 > Ahg484183 jgi|Araly1|484183|fgenesh2_kg.5__175__AT2G02760.1 Length=864 Score = 586 bits (317), Expect = 1e-166 Identities = 429/484 (89%), Gaps = 3/484 (1%) Strand=Plus/Plus Query 234 TTTCCACGA-AAG-AA-AGGAGGATGTCGACGCCAGCAAGGAAGAGGTTAATGAGGGATT 290 ||| ||| | ||| || || ||||||||||| ||||| |||||||| || |||||||||| Sbjct 202 TTTGCACAACAAGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATT 261 Query 291 TCAAGAGGTTGCAGCAAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACA 350 |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| | Sbjct 262 TCAAGAGGTTGCAGCAAGACCCACCTGCTGGAATTAGTGGTGCTCCACAAGACAACAATA 321 Query 351 TTATGCTCTGGAATGCTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTT 410 | ||| | ||||||||||| ||||| ||||||||||| || || |||||||||||||||| Sbjct 322 TCATGTTGTGGAATGCTGTTATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTT 381 Query 411 TCAAACTCTCACTGCAGTTCTCTGAAGATTATCCCAATAAACCACCAACAGTTCGGTTTG 470 ||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||| Sbjct 382 TCAAACTCTCACTGCAGTTTTCGGAAGATTATCCTAATAAGCCACCAACAGTTCGGTTTG 441 Query 471 TGTCACGGATGTTTCATCCTAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTAC 530 | ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| | Sbjct 442 TTTCACGGATGTTCCATCCAAATATTTATGCTGATGGGAGTATATGCTTGGACATTCTCC 501 Query 531 AAAACCAGTGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGC 590 | ||||| ||||||||||| || ||||| || |||||||| |||||||| ||||| |||| Sbjct 502 AGAACCAATGGAGTCCAATATACGATGTCGCGGCTATACTAACCTCCATTCAGTCATTGC 561 Query 591 TCTGTGACCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAA 650 ||||||| ||||||||||||||||||||||| |||||||| || || |||| ||| |||| Sbjct 562 TCTGTGATCCTAATCCGAATTCTCCTGCAAATTCGGAAGCGGCACGAATGTTCAGTGAAA 621 Query 651 GCAAGCGCGAGTACAACAGGAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACT 710 ||||||||||||||||||| ||||| || || ||||| || |||||||||||||| |||| Sbjct 622 GCAAGCGCGAGTACAACAGAAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACT 681 Query 711 AGTA 714 |||| Sbjct 682 AGTA 685 > Ahg315981 jgi|Araly1|315981|fgenesh1_pm.C_scaffold_2001014 Length=471 Score = 261 bits (141), Expect = 7e-69 Identities = 341/434 (79%), Gaps = 27/434 (6%) Strand=Plus/Plus Query 254 ATGTCGACGCCAGCAAGGAAGAGG-TTAATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 312 ||||| || ||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1 ATGTCAACTCCAGCAAGGAAGAGGCTT-ATGAGGGATTTCAAGAGGTTGCAGCAAGACCC 59 Query 313 ACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACAT-TATGCTCTGGAATGCTGTCA 371 ||||| || || | ||||| | | || || |||||||| | | |||||||| || || | Sbjct 60 TCCTGCTGGAATCAATGGTGATTCTCAAGATAACAACATCT-TACTCTGGAACGCCGTTA 118 Query 372 TATTTGGGCCTGATGACACACCATGGGATGGAGGTACT-TTCAAACTCTC-ACT--G-CA 426 | ||||| || ||||| |||| |||||||||||||| || ||| | | | | | | Sbjct 119 TCTTTGGTCCGGATGATACACTTTGGGATGGAGGTACAATT-AAAGTTTGTATTATGACC 177 Query 427 GTTC--TCTG-A-AG-ATTATCCCAATAAACCACCAACAGTTCGGTTTGTGT-CACGGAT 480 ||| | | | || ||||||| || || ||||| || ||||| ||||| | | ||||| Sbjct 178 CTTCAATTTACAGAGGATTATCCAAACAAGCCACCGACTGTTCGCTTTGT-TACTCGGAT 236 Query 481 GTTTCATCCTAATATTTATGCAGATGGGAGTATCTG-CTTGGACATTCT-ACAAAACCAG 538 |||||| || ||||| ||||||||||| ||||| || |||| |||| || ||| || ||| Sbjct 237 GTTTCACCCAAATATCTATGCAGATGGAAGTATTTGTCTTG-ACAT-CTTACAGAATCAG 294 Query 539 TGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTC-CTTGCT-CTGTG 596 |||||||| || ||||||||||| || || ||||| || |||||||| || || ||||| Sbjct 295 TGGAGTCCTATTTATGATGTTGCAGCAATTCTTACATCTATCCAGTCACT--CTTCTGTG 352 Query 597 A-CCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAG 655 | ||| | || || || ||||||||||| |||||||| || | | |||||||| |||| Sbjct 353 ATCCC-AGCCCAAACTCACCTGCAAACTCAGAAGCTGCCCGCTTATTCAGCGAAAACAAG 411 Query 656 CGCGAGTACAACAG 669 || || |||||||| Sbjct 412 CGAGAATACAACAG 425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36979229490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5