BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14450.1
Length=535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471620 jgi|Araly1|471620|fgenesh2_kg.1__1574__AT1G14450.1 758 0.0
Ahg484164 jgi|Araly1|484164|fgenesh2_kg.5__156__AT2G02510.1 244 4e-64
> Ahg471620 jgi|Araly1|471620|fgenesh2_kg.1__1574__AT1G14450.1
Length=525
Score = 758 bits (410), Expect = 0.0
Identities = 491/529 (93%), Gaps = 9/529 (2%)
Strand=Plus/Plus
Query 1 AATCGAATACCTGAGAAAATGGCGAAGCCTTTGGGAACAACCGGCGAATTTTTCCGGCGA 60
||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AATCGAACACCGGCGAAAATGGCGAAGCCTTTGGGAACTACCGGCGAATTTTTCCGGCGA 60
Query 61 AGAGATGAATGGAGGAAGCATCCGATGCTTTCGAATCAAATGAGACACGCTCTTCCCGGA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGATGAATGGAGGAAGCATCCAATGCTTTCGAATCAAATGAGACACGCTCTTCCCGGA 120
Query 121 CTTGGAATCGGCGTCGCCGCCTTCTGCGTTTATCTCGTCGGTGAGCAGATCTACAACAAA 180
||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 CTTGGCATCGGAGTCGCCGCCTTCTGCGTTTACCTCGTTGGTGAGCAGATCTACAACAAA 180
Query 181 GCTTTGGCTCCTTCCAAATCATCTCACCACCACCAGGAACAGACTGCTCCGTCTCACTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTTGGCTCCTTCCAAATCATCTCACCACCACCAGGAACAGACTGCTCCGTCTCACTGA 240
Query 241 AGAGCATCTTTCTTCTTCGATGAGATGCTTGAAACAGTGGCACAAGGCTGAACTCAGGGT 300
||| |||| | ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AGACCATCGATGTTCTTGGATGAGATGCTTGAAACAGTGGCACAAGGCTGAACTCAAGG- 299
Query 301 CT-CTTCTTGGTTACTAG-TTTTCGTTGGATTGTCTTAATAATCATGTTTAAATCGAATA 358
|| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| || |
Sbjct 300 CTTCTTCTTGGTTACTAGCTTTTCATGGGATTGTCTTAATAATCATGTTTAAATCAAACA 359
Query 359 CAAAGAATTTGATATCTATATTTGAACTGTAAAGCTTGTTGGCTCAAAGGTTCTCTTTGT 418
||||||||||||| ||| | |||||| |||||||||||||||| ||||||||||||||||
Sbjct 360 CAAAGAATTTGATTTCTCTGTTTGAATTGTAAAGCTTGTTGGCGCAAAGGTTCTCTTTGT 419
Query 419 ATCGCACAAGTTAAGATTCTGCAT-AT-TCTTATCTTATTTGATACTTGCTACTTAGCTA 476
||| |||||||||||||| || || || |||| ||| | |||||||||||||||||||||
Sbjct 420 ATCCCACAAGTTAAGATTTTG-ATTATGTCTT-TCTAAGTTGATACTTGCTACTTAGCTA 477
Query 477 AACTGCGTCGTTTAAGAGATCGTTGCTTTCAGGTTTATTATATAACttt 525
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 AACTGCGTCGTTTAAGAGATCGTA--TTTCAGGTTTATTATATAACTTT 524
> Ahg484164 jgi|Araly1|484164|fgenesh2_kg.5__156__AT2G02510.1
Length=435
Score = 244 bits (132), Expect = 4e-64
Identities = 210/247 (85%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 4 CGAATACCTGAGAAAATGGCGAAGCCTTTGGGAACAACCGGCGAATTTTTCCGGCGAAGA 63
|||| ||| |||||||||||||| || |||||| | ||||| ||||||||||||||||||
Sbjct 6 CGAAGACCGGAGAAAATGGCGAAACCATTGGGATCTACCGGAGAATTTTTCCGGCGAAGA 65
Query 64 GATGAATGGAGGAAGCATCCGATGCTTTCGAATCAAATGAGACACGCTCTTCCCGGACTT 123
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 66 GATGAATGGAGGAAGCATCCGATGCTATCGAATCAAATGAGACACGCACTTCCAGGTCTC 125
Query 124 GGAATCGGCGTCGCCGCCTTCTGCGTTTATCTCGTCGGTGAGCAGATCTACAACAAAGCT 183
|||||||| || || || ||||||||||||||||||||||| |||||||| | |||| ||
Sbjct 126 GGAATCGGTGTTGCTGCTTTCTGCGTTTATCTCGTCGGTGAACAGATCTATAGCAAA-CT 184
Query 184 T-TGGCTCCTTCCAAATCATCTCACCACCACCAGGAACAGAC-TGCTCCGTCTCACTGAA 241
|||||||||| ||| ||| | | | ||| |||| || ||||||||||||||||
Sbjct 185 CATGGCTCCTTCTTC-TCAA-TCATCGC-ATCAGAAACA-ACCTGCTCCGTCTCACTGA- 239
Query 242 GAGCATC 248
||| |||
Sbjct 240 GAGAATC 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19497505979
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5