BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14685.3
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471648 jgi|Araly1|471648|fgenesh2_kg.1__1602__AT1G14685.1 1736 0.0
Ahg484115 jgi|Araly1|484115|fgenesh2_kg.5__107__AT2G01930.1 313 3e-84
> Ahg471648 jgi|Araly1|471648|fgenesh2_kg.1__1602__AT1G14685.1
Length=1326
Score = 1736 bits (940), Expect = 0.0
Identities = 1079/1142 (94%), Gaps = 26/1142 (2%)
Strand=Plus/Plus
Query 487 TAGATCTTTGAAATGGATGACGATGGGTTTCGTAATTGGGGTTACTATGAACCAGCTGCT 546
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 206 TAGATCTTTGAAATGGATGACGATGGGTTTCGCAATTGGGGTTACTATGAACCAGCGGCT 265
Query 547 GCTACCTTTAAAGGTAATCTCGGTTTGCAGCTAATGTCTACCATTGATCGGAACACTAAA 606
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 266 GCTACCTTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACCATTGATCGGAACACTAAA 325
Query 607 CCGTTTTTACCTGGGCGGGATCCGAATCTAATGATGGGGCCTAACGGGTCATATCACCAC 666
|||||||||||||| || || |||||||||||||| |||||||| |||||||||||||||
Sbjct 326 CCGTTTTTACCTGGCCGTGACCCGAATCTAATGATCGGGCCTAATGGGTCATATCACCAC 385
Query 667 CAAGAGCCTCCTATCCACATGAGCTACAATTGGATTAACCAACAGAAGGATAAGTTCTTC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CAAGAGCCTCCTATCCACATGAGCTACAATTGGATTAACCAACAGAAGGATAAGTTCTTC 445
Query 727 AATATGTTGCCTGTTACAACAGCCACTCCTAACTACGGTAATGTCCTTCCCGAAACTTCG 786
||||||||||||||||| | | || ||||||| |||||||||||||||||||||||||||
Sbjct 446 AATATGTTGCCTGTTAC-A-A-CCGCTCCTAATTACGGTAATGTCCTTCCCGAAACTTCG 502
Query 787 TCTGCTCCGTCGATGCAGATGAATCTCCATCATCATCTTCAAACCGAGGAGAATCCGGTT 846
||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct 503 TCTGCCCCGTCGATGCAGATGAACCTCCATCATCATCATCAAACCGAGGAGACCCCGGTT 562
Query 847 AAGTTGGAAGAAGAGATTGTTGTTCAGACTAAGAAGAGAAAGACCAATGCAAAAGCTGGC 906
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AAATTGGAAGAAGAGATTGTTGTTCAGACTAAGAAGAGAAAGACCAATGCAAAAGCTGGC 622
Query 907 TCGACTCCAAAGGCTAAGAAGCCAAGGAAACCAAAGGATGAGAACAGTaacaacaacaac 966
|| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 623 TCCACAGCAAAGGCTAAGAAGCCAAGGAAACCAAAGGATGAGAACAG---CAACAACAAC 679
Query 967 aacaacaacaCGAATGTTACTCGAGTTAAACCCGCTAAGAAAAGTGTTGACTTGGTGATC 1026
|||||||||||||||||| ||||||| ||||| |||||||||||||| || ||||||||
Sbjct 680 AACAACAACACGAATGTTTCTCGAGTGAAACCGGCTAAGAAAAGTGTCGATTTGGTGATT 739
Query 1027 AATGGAGTGAGTATGGACATTTCGGGTCTTCCTGTTCCTATCTGCACTTGCACTGGAGCT 1086
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 740 AATGGAGTGAGTATGGACATTTCGGGTCTTCCTGTCCCGATCTGCACTTGCACTGGAGCT 799
Query 1087 CCTCAGCAATGCTACCGTTGGGGATGTGGCGGTTGGCAGTCTGCTTGTTGTACCACAAAC 1146
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 800 CCTCAGCAATGCTACCGTTGGGGATGTGGCGGTTGGCAGTCTGCGTGTTGTACCACAAAC 859
Query 1147 ATCTCAATGCATCCATTACCAATGAGTACTAAACGCCGTGGAGCGAGGATCTCGGGAAGG 1206
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 860 ATCTCGATGCATCCATTGCCAATGAGTACTAAACGCCGTGGAGCGAGGATCTCCGGAAGG 919
Query 1207 AAGATGAGTCAAGGCGCGTTTAAGAAGGTTCTTGAGAAACTTGCTTCTGATGGGTTTAAC 1266
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 920 AAGATGAGTCAAGGCGCGTTTAAGAAGGTTCTTGAGAAACTAGCTTCTGATGGGTTTAAC 979
Query 1267 TTTGGGAATCCGATTGATCTTAAGAGCCATTGGGCAAGACATGGAACTAACAAGTTCGTC 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TTTGGGAATCCGATTGATCTTAAGAGCCATTGGGCAAGACATGGAACTAACAAGTTCGTC 1039
Query 1327 ACAATCAGATGATTAGTTGCTTGATTAGTAAAACAGAACAAGTGAGTGTTTCTCTTCCGG 1386
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1040 ACAATCAGATGATTAGTTGCTTGATTAGTAAAAAAGAAGAAGTGAGTGTTTCTCTTCCGG 1099
Query 1387 GATGGAATCTCTCAATGATGGTGTATGTATATA--CAACAAATCTGAAATCTGTGACCTT 1444
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1100 GATGGAATCTCTCAATGATGGTGTATGTATATATACAACAAATCT----TCTGTGACCTT 1155
Query 1445 TT-CAAAAATTCTGTCTGCAATCTGAGTTCGATTCTGTTTTCAGGTAAA-CCATCTTCGT 1502
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1156 TTTCAAAA-TTCTGTCTGCAATCTGAGTTCGATTCTGTTTTCAGGTAAAACCATCTTCGT 1214
Query 1503 TGTAGGGTTTGGAAGCAGAGTTCTCTGtttt-ctttaccacttttttttatcacactttt 1561
|||||||||||||| |||||||||||||||| ||| |||||||||| |||| || ||
Sbjct 1215 TGTAGGGTTTGGAAACAGAGTTCTCTGTTTTTCTT-ACCACTTTTT---ATCATACGTT- 1269
Query 1562 gctttgttttttgtttgtttgtCTATCTGTGTGTCTGAGGAAGAAGAAGGTGTCTGAGAA 1621
|||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||
Sbjct 1270 GCTTTGTTTTTTGTTTGTTTGTCTATCTGTGT--CTGAGGAAGAA-A-G-TGTCTGAGAA 1324
Query 1622 AA 1623
||
Sbjct 1325 AA 1326
> Ahg484115 jgi|Araly1|484115|fgenesh2_kg.5__107__AT2G01930.1
Length=1183
Score = 313 bits (169), Expect = 3e-84
Identities = 291/349 (83%), Gaps = 12/349 (3%)
Strand=Plus/Plus
Query 994 AAACCCGCTAAGAAAAGTGTTGA-CTTGGTGATCAATGGAGTGAGTATGGACATTTCGGG 1052
||||| | |||||| |||||||| ||| ||||| ||||| ||||||||||||||||| ||
Sbjct 628 AAACCGGTTAAGAAGAGTGTTGATCTT-GTGATTAATGGTGTGAGTATGGACATTTCTGG 686
Query 1053 TCTT-CCTGTTCCTATCTGCACTTGCACTGGAGCTCCTCAGCAATGCTACCGTTGGGGAT 1111
| || ||||| || | |||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 687 T-TTACCTGTACCGGTTTGCACTTGTACTGGAACTCCTCAGCAATGTTACCGTTGGGGAT 745
Query 1112 GTGGCGGTTGGCAGTCTGCTTGTTGTACCACAAACATCTCAATGCATCCATTACCAATGA 1171
||||||| ||||| || |||||||| || || ||||| || || |||| ||||| ||||
Sbjct 746 GTGGCGGATGGCAATCCGCTTGTTGCACAACTAACATTTCGGTGTATCCTTTACCGATGA 805
Query 1172 GTACTAA-ACGCCGTGGAGCGAGGATCTCGGGAAGGAAGATGAGTCAAGGCGCGTTTAAG 1230
||||||| | | || || || ||||| || || |||||||||||||||||||||||||||
Sbjct 806 GTACTAAGA-GACGCGGCGCAAGGATTTCAGGTAGGAAGATGAGTCAAGGCGCGTTTAAG 864
Query 1231 AAGGTTCTTGAGAAACTT-GCTTCTGATGGGTT-TAACTTTGGGAATCCGATTGATCTT- 1287
||||| || |||||| || || | || || || || |||||||||| |||||||| ||
Sbjct 865 AAGGTCCTAGAGAAA-TTAGCAACAGAAGG-TTATAGCTTTGGGAATGCGATTGAT-TTG 921
Query 1288 AAGAGCCATTGGGCAAGACATGGAACTAACAAGTTCGTCACAATCAGAT 1336
||||| |||||||| ||||||||||| || ||||| ||||| |||||||
Sbjct 922 AAGAGTCATTGGGCTAGACATGGAACCAATAAGTTTGTCACGATCAGAT 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5