BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14800.1 Length=1155 Score E Sequences producing significant alignments: (Bits) Value Ahg921631 jgi|Araly1|921631|scaffold_102912.1 691 0.0 Ahg942732 jgi|Araly1|942732|scaffold_603276.1 289 4e-77 > Ahg921631 jgi|Araly1|921631|scaffold_102912.1 Length=616 Score = 691 bits (374), Expect = 0.0 Identities = 494/550 (90%), Gaps = 15/550 (3%) Strand=Plus/Plus Query 1 ATGGCTGAAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGCT 60 ||||||| ||||||||||||| |||||||| |||| ||||||||||| |||||||||| | Sbjct 21 ATGGCTGCAGTTGATGTTGTTCCAATTCCTACTAATGCAAACTATGTTGCTTTTGATGAT 80 Query 61 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGCT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 81 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGTCTACTTCGTTTTTGGGATGCT 140 Query 121 CGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAAA 180 |||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| Sbjct 141 CGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAAA 200 Query 181 TGCTCCGTAATCCATGCTTTTATCCCAGCAGCTCTTGCTTCACATTTCCGCCAAGTTTTG 240 ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 201 TGCTCAGTAATCCATGCTTTTATCCCAGCAGCTCTTGCCTCACAATTCCGTCAAGTTTTG 260 Query 241 CGTGAAGG--CATAATCTTCAATGTTAGTGGGTTTGAAGTGGGACGTTGCACGAAACTCT 298 |||||||| | || ||| |||| |||| ||||||||||||||||| ||||| ||||||| Sbjct 261 CGTGAAGGTTC-TA-TCTACAATATTAGCGGGTTTGAAGTGGGACGGTGCACAAAACTCT 318 Query 299 ACAAGATCACTGACCATCCTTTTCTCCTCCGTTTTCTCCCTGCCACAACGATTATTGAAG 358 |||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||| Sbjct 319 ACAAGATCACTGACCATCCTTTTCTCCTACGTTTTCTCCCTGCCACAACGACTGTAGAAC 378 Query 359 TTTCAGATGTTGGCCCTACAATTGAGA-GGGAAAAATTTATGCTACGTAACTTTGACAAC 417 ||||||||||||||||||||||||| | ||||| |||| ||||||||||| ||||||||| Sbjct 379 TTTCAGATGTTGGCCCTACAATTGA-ACGGGAACAATTCATGCTACGTAATTTTGACAAC 437 Query 418 CTTCAAGCTCTTGCTAACACCAACATTGAACTTCCTG--G-------CCAAATCACTTTC 468 || |||||||| ||||||||||||||||||||||||| | ||||||| | ||| Sbjct 438 CTACAAGCTCTAGCTAACACCAACATTGAACTTCCTGATGTTGTAGGCCAAATCTCCTTC 497 Query 469 GTCCAAGGGTCAAACTTGAATGATCCAACTTCTACTCAACGTTTGGTTTTGCGATACCGG 528 |||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 498 ATCCAAGGGTCGAACCTGAATGACCCAACTTCCACTCAACGTTTGGTTTTGCGTTACCGT 557 Query 529 ATTGATTCGT 538 || ||| ||| Sbjct 558 ATCGATACGT 567 > Ahg942732 jgi|Araly1|942732|scaffold_603276.1 Length=246 Score = 289 bits (156), Expect = 4e-77 Identities = 187/202 (93%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 1 ATGGCTG-AAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGC 59 ||||||| || ||||||||||| |||||||| | || ||||||||||| |||||||||| Sbjct 21 ATGGCTGCAA-TTGATGTTGTTCCAATTCCTACCAATGCAAACTATGTTGCTTTTGATGA 79 Query 60 TTTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGC 119 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 80 TTTACGACTTGGTCGCTCTACTCAACAGGTTGTTGGTCGGCTACTTCGTTTTTGGGATGC 139 Query 120 TCGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAA 179 ||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| Sbjct 140 TCGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAA 199 Query 180 ATGCTCCGTAATCCATGCTTTT 201 |||||| ||||||||||||||| Sbjct 200 ATGCTCAGTAATCCATGCTTTT 221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43078896210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5