BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14890.1 Length=944 Score E Sequences producing significant alignments: (Bits) Value Ahg471678 jgi|Araly1|471678|fgenesh2_kg.1__1632__AT1G14890.1 1160 0.0 Ahg935881 jgi|Araly1|935881|scaffold_500072.1 147 2e-34 > Ahg471678 jgi|Araly1|471678|fgenesh2_kg.1__1632__AT1G14890.1 Length=903 Score = 1160 bits (628), Expect = 0.0 Identities = 797/875 (91%), Gaps = 25/875 (3%) Strand=Plus/Plus Query 1 CTCAATGTCTACATAAACCCTCCAATCTCACATGTTAACTCGAAACAAAGAAGAAATAAA 60 ||||||| ||||||||||| ||||||||||||||| |||||| ||| |||||||||| Sbjct 1 CTCAATGCCTACATAAACCTTCCAATCTCACATGTAAACTCGTAAC----AAGAAATAAA 56 Query 61 CAGAGTAAAAAAC-TTAAAGC-TTAAAATGGGGAGGCAGCTTTATACGACGACGGTTCTC 118 |||||| |||||| ||||| | |||||||||| || ||||||||||||||||| ||||| Sbjct 57 CAGAGTTAAAAACTTTAAA-CTTTAAAATGGGAAGTAAGCTTTATACGACGACGTTTCTC 115 Query 119 TACTTAGTCACCCTACTCTTCATTTGCCGGACAATCTCAGCCGTCCGTTTCCCTCCGGAA 178 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 116 TACTTAGTCACCTTACTCTTCATTTTCCGGACAATCTCAGCCGTCCGTTTCCCTCCGGCA 175 Query 179 CAACCAACAACCGATGATCTAGATTTCATCCGTACGAGCTGCAACACAACGCTGTATCCA 238 || ||||||||||| || ||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 176 CAGCCAACAACCGACGACCTAGATTTCATCCGTACTAGCTGCAACGCAACGCTTTATCCA 235 Query 239 GACGTATGTTACACGTCTCTAGCTGGATACGCCTCCGCCGTCCAAGATAATCCGGCAAGG 298 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 236 GACGTATGTTTCACGTCTCTAGCTGGATACGCCTCCGCCGTCCAAGATAATCCGGCGAGA 295 Query 299 CTAGCTAAACTCGCAATCGGCGTTTCTCTCTCCCGCGCAAAATACACGGCGGCTTACCTC 358 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 296 CTAGCTAAACTGGCAATCGGCGTTTCCCTCTCCCGCGCAAAATACACGGCGGCTTACCTC 355 Query 359 TCCAAACTCTCACGTCGCGCTGCCTCAGCTGCTGTCCACGACTGCGTTTCGAACGTGGGA 418 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 356 TCCAAACTCTCACGTCGCGCTGCCTCAGCCGCCGTCCACGACTGCGTTTCGAACGTTGGA 415 Query 419 GATGCCGTGGATCAGATGCGTGGCTCCCTAAGGCAGCTCCGAGAGATGAACCACCGTCGT 478 || ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 416 GACGCCGTAGATCAGATGCGTGGCTCCCTAAGGCAGCTTCGAGAGATGAACCATCGTCGT 475 Query 479 CCCGGAGATCCGGCGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCG 538 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 476 CCCGGAGCGCCGGCTTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCTGCG 535 Query 539 TTGACGGACGAGGAGACGTGTACGGATGGGGTCACGGAGGAGATGGAAGACGGAGAGACG 598 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 536 TTGACGGACGAGGAGACGTGTACGGATGGGATCACGGAGGAGATGGAGGACGGAGAGACG 595 Query 599 AAGACGGCTATTTGCGATAGAGTCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTCGCT 658 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 596 AAGACGGCGATTTGCGATAGAGTCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTTGCT 655 Query 659 CTCGTTAATACCTACGCCAACAATGGAGCCTAA-CTAA-CTAAGCTAGGTCTTGAAATTC 716 |||||||| || || ||||| |||||||||||| | || |||||||||||||||||| | Sbjct 656 CTCGTTAACACATATGCCAATAATGGAGCCTAAGCAAAGCTAAGCTAGGTCTTGAAAC-C 714 Query 717 CTAAAGTTATAAAAACACTTGTATATATATATGTGTTAAGTTGTGTGCTTAGTTTATAAT 776 ||||||||||||||| ||||||||||||| |||| | | | | || ||| || | Sbjct 715 CTAAAGTTATAAAAATACTTGTATATATA---GTGT---GCT-TA-G-TT--TTT-TA-T 761 Query 777 GTGTATTCGAGGCTTTGAAACCGAGTTAGAACTCTGAGTTTGG-GTGTTCAAATTATACA 835 ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| Sbjct 762 GTGTATTCGAGGCTTTGAAACCGAGTTAGAACTCTGAGTTTTGTGTATTCAAATTATACA 821 Query 836 TTAATCTATGTTTGATTGTATTAATATTAATATAT 870 | |||||||||||| |||||||| |||| ||||| Sbjct 822 TAAATCTATGTTTGGTTGTATTAGTATTT-TATAT 855 > Ahg935881 jgi|Araly1|935881|scaffold_500072.1 Length=719 Score = 147 bits (79), Expect = 2e-34 Identities = 161/200 (81%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 492 CGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCGTTGACGGACGAGG 551 |||||||||||||||||||||||||||||||||||||||| || || |||||||| |||| Sbjct 497 CGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGTGCAGCATTGACGGATGAGG 556 Query 552 AGACGTGTACGGATGGGGTCACGGAGGAGATGGAAGACGGAG-A--GACGAAGACGGCTA 608 | |||||||||||||| | | || | ||||| || |||| | || |||||| | Sbjct 557 ACACGTGTACGGATGGATTT--GAAG-ATATGGACGAAGGAGGATTGATTAAGACGACCG 613 Query 609 TTTGCGATAGAG-TCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTCGCTCTCGTTAAT 667 |||| ||||| | ||| || || |||||||| ||||||||||| || || || || || Sbjct 614 TTTGTGATAG-GCTCGAGGAAGTGAAGAGGTTAACGAGTAATGCTCTTGCCCTTGTCAAC 672 Query 668 ACCTACGCCAACAATGGAGC 687 || || |||||||||||||| Sbjct 673 ACTTATGCCAACAATGGAGC 692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35034960723 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5