BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14920.1 Length=2129 Score E Sequences producing significant alignments: (Bits) Value Ahg471680 jgi|Araly1|471680|fgenesh2_kg.1__1634__AT1G14920.1 2772 0.0 Ahg484073 jgi|Araly1|484073|fgenesh2_kg.5__65__AT2G01570.1 1122 0.0 > Ahg471680 jgi|Araly1|471680|fgenesh2_kg.1__1634__AT1G14920.1 Length=1959 Score = 2772 bits (1501), Expect = 0.0 Identities = 1798/1936 (93%), Gaps = 42/1936 (2%) Strand=Plus/Plus Query 78 TCCTAACCGATCCCCGAAGCTAAAGATTCTTCACCTTCCCAAATAAAGCAAAACCTAGAT 137 ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 59 TCCCAACCAATCCCCGAAGCTAAAGATTCTTCACCTTCCCAAATAAAGCTAAACCTAGAT 118 Query 138 CCGACATTGAAGGAAAAACCTTTTAGATCCATCTC-TGaaaaaaaaCCAACCATGAAGAG 196 ||||||||||||| ||||||||||||||||||||| || ||| |||||||||||||| Sbjct 119 CCGACATTGAAGG-AAAACCTTTTAGATCCATCTCTTG----AAACCCAACCATGAAGAG 173 Query 197 AGatcatcatcatcatcatcatcaAGATAAGAAGAC--T-ATGATGATGAATGAAGAAGA 253 |||||||| | ||| |||||||||||||||||||| | |||||||||||||||||||| Sbjct 174 AGATCATC--C-TCAACATCATCAAGATAAGAAGACGATGATGATGATGAATGAAGAAGA 230 Query 254 CGACGGTAACGGCATGGATGAGCTTCTAGCTGTTCTTGGTTACAAGGTTAGGTCATCCGA 313 ||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||| || Sbjct 231 CGACGCTAACGGCATGGATGAGCTTTTAGCCGTTCTTGGTTACAAGGTGAGGTCATCGGA 290 Query 314 AATGGCTGATGTTGCTCAGAAACTCGAGCAGCTTGAAGTTATGATGTCTAATGTTCAAGA 373 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 291 AATGGCGGATGTTGCTCAGAAACTCGAGCAGCTTGAAGTTATGATGTCAAATGTTCAAGA 350 Query 374 AGACGATCTTTCTCAACTCGCTACTGAGACTGTTCACTATAATCCGGCGGAGCTTTACAC 433 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 351 AGACGATCTTTCTCAACTCGCTACTGAGACCGTTCACTACAATCCGGCGGAGCTTTACAC 410 Query 434 GTGGCTTGATTCTATGCTCACCGACCTTAATCCTCCGTCGTCTAACGCCGAGTACGATCT 493 |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| Sbjct 411 GTGGCTTGATTCTATGCTTTCTGACCTCAATCCTCCGTCGTCTAACGCCGAGTACGATCT 470 Query 494 TAAAGCTATTCCCGGTGACGCGATTCTCAATCAGTTCGCTATCGATTCGGCTTCTTCGTC 553 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 471 TAAAGCTATTCCCGGTGACGCGATTCTGAATCAGTTCGCTATCGATTCGTCTTCTTCGTC 530 Query 554 TAACCAAGGCGGCGGAGGAGATACGTATACTACAAACAAGCGGTTGAAATGCTCAAACGG 613 |||||||||||||||| | |||| |||||||||||||||| ||||||| ||| ||||| Sbjct 531 GAACCAAGGCGGCGGAG-A--TACGAATACTACAAACAAGCGTTTGAAATACTCTAACGG 587 Query 614 CGTCGTGGAAACCACTACAGCGACGGCTGAGTCAACTCGGCATGTTGTCCTGGTTGACTC 673 |||||||| ||| || ||| ||||||||||||||| ||||| ||| |||||||||||||| Sbjct 588 CGTCGTGGCAACAACAACAACGACGGCTGAGTCAATTCGGCCTGTAGTCCTGGTTGACTC 647 Query 674 GCAGGAGAACGGTGTGCGTCTCGTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTTCAGAA 733 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 648 GCAGGAGAACGGTGTGCGTCTTGTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTGCAGAA 707 Query 734 AGAGAATCTGACTGTAGCGGAAGCTCTGGTGAAGCAAATCGGATTCTTAGCCGTTTCTCA 793 |||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 708 GGAGAATCTGACTCTAGCAGAAGCTCTGGTGAAGCAGATCGGATTCTTAGCTGTTTCTCA 767 Query 794 AATCGGAGCGATGAGAAAAGTCGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATTTA 853 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 768 AATCGGAGCAATGAGAAAAGTCGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATCTA 827 Query 854 CCGTCTCTCTCCGTCGCAGAGTCCAATCGACCACTCTCTCTCCGATACTCTTCAGATGCA 913 ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 828 TCGTCTCTCTCCGTCGCAGAGTCCGATTGACCACTCTCTCTCCGATACTCTCCAGATGCA 887 Query 914 CTTCTACGAGACTTGTCCTTATCTCAAGTTCGCTCACTTCACGGCGAATCAAGCGATTCT 973 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 888 CTTCTACGAGACTTGTCCTTATCTCAAGTTCGCTCATTTCACGGCGAATCAAGCGATTCT 947 Query 974 CGAAGCTTTTCAAGGGAAGAAAAGAGTTCATGTCATTGATTTCTCTATGAGTCAAGGTCT 1033 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 948 CGAAGCTTTTCAAGGGAAGAAAAGAGTTCACGTCATTGATTTCTCTATGAGTCAAGGTCT 1007 Query 1034 TCAATGGCCGGCGCTTATGCAGGCTCTTGCGCTTCGACCTGGTGGTCCTCCTGTTTTCCG 1093 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1008 TCAATGGCCGGCGCTTATGCAGGCTCTCGCGCTTCGACCTGGTGGTCCTCCGGTTTTCCG 1067 Query 1094 GTTAACCGGAATTGGTCCACCGGCACCGGATAATTTCGATTATCTTCATGAAGTTGGGTG 1153 |||||||||||| ||| ||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 1068 GTTAACCGGAATCGGTACACCGGCGCCGGATAATTTCGATTACCTTCACGAAGTTGGGTG 1127 Query 1154 TAAGCTGGCTCATTTAGCTGAGGCGATTCACGTTGAGTTTGAGTACAGAGGATTTGTGGC 1213 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct 1128 TAAGCTGGCTCATTTAGCGGAGGCGATTCATGTGGAGTTTGAGTACAGAGGATTTGTGGC 1187 Query 1214 TAACACTTTAGCTGATCTTGATGCTTCGATGCTTGAGCTTAGACCAAGTGAGATTGAATC 1273 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1188 TAACACTTTAGCTGATCTTGATGCGTCGATGCTTGAGCTTAGACCGAGTGAGATTGAATC 1247 Query 1274 TGTTGCGGTTAACTCTGTTTTCGAGCTTCACAAGCTCTTGGGACGACCTGGTGCGATCGA 1333 |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| Sbjct 1248 TGTTGCGGTTAACTCTGTTTTCGAACTTCACAAGCTCTTAGGACAACCTGGTGCGATCGA 1307 Query 1334 TAAGGTTCTTGGTGTGGTGAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGA 1393 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 TAAGGTTCTTGAAGTGGTGAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGA 1367 Query 1394 ATCGAACCATAATAGTCCGATTTTCTTAGATCGGTTTACTGAGTCGTTGCATTATTACTC 1453 ||||||||| ||||||||| ||||||| || ||||||||||||||| ||||||||||||| Sbjct 1368 ATCGAACCACAATAGTCCGGTTTTCTTGGACCGGTTTACTGAGTCGCTGCATTATTACTC 1427 Query 1454 GACGTTGTTTGACTCGTTGGAAGGTGTACCGAGTGGTCAAGACAAGGTCATGTCGGAGGT 1513 | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1428 GTCGTTGTTTGACTCGTTGGAAGGAGTGCCGAGTGGTCAAGACAAGGTCATGTCGGAGGT 1487 Query 1514 TTACTTGGGTAAACAGATCTGCAACGTTGTGGCTTGTGATGGACCTGACCGAGTTGAGCG 1573 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1488 TTATTTGGGTAAACAGATCTGCAACGTTGTGGCTTGTGATGGACCTGACAGAGTTGAGCG 1547 Query 1574 TCATGAAACGTTGAGTCAGTGGAGGAACCGGTTCGGGTCTGCTGGGTTTGCGGCTGCACA 1633 || |||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||| Sbjct 1548 CCACGAAACGTTGAGTCAATGGAGGAACCGGTTCGGTTCTACTGGGTTTGCGGCGGCACA 1607 Query 1634 TATTGGTTCGAATGCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGTTCAACGGCGGTGA 1693 ||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| Sbjct 1608 TATCGGTTCGAATGCGTTTAAGCAAGCAAGCATGCTCTTGGCTCTGTTCAACGGCGGTGA 1667 Query 1694 GGGTTATCGGGTGGAGGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACACGACCGCT 1753 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1668 GGGTTATCGGGTGGAAGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACTCGGCCGCT 1727 Query 1754 CATAGCCACCTCGGCTTGGAAACTCTCCACCAATTAGATGGTGGCTCAATGAATTGATCT 1813 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1728 CATAGCCACCTCGGCTTGGAAACTCTCCACCAGTTAGATGGTGGCTCAATGAATTGATCA 1787 Query 1814 GTTGAACCGGTTATGATGATAGAT-TTCCGACCGAAGCCAAA-CTAAATCCTACTGTTTT 1871 ||| | |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1788 GTTTA-CCGGTTATGATGATAGATGTTCCGACCGAA-CCAAAACTAAATCCTACTGTTTT 1845 Query 1872 TCCCTTTGTCACTTGTTAAGATCTTATCTTTCATTATATTAGGTAATTGAAAAATTTT-A 1930 || ||||||||||||||||||||| | | || | | || || |||| | Sbjct 1846 -CCTTTTGTCACTTGTTAAGATCTT-T-----A--AT-T--G--AA---AA---TTTTCA 1885 Query 1931 ATCTCGCTTTGGAGAGttttttttttttGCATGTGACATTGGAGGGTAAATTGGATAGGC 1990 |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1886 ATCTCGCTTTCGAGAGTTTTTTTTGCAT--ATGTGACATTGGAGGGTAAATTGGATAGGC 1943 Query 1991 AGAAATAGAAGTATGT 2006 |||||||||| ||||| Sbjct 1944 AGAAATAGAATTATGT 1959 > Ahg484073 jgi|Araly1|484073|fgenesh2_kg.5__65__AT2G01570.1 Length=2133 Score = 1122 bits (607), Expect = 0.0 Identities = 977/1156 (85%), Gaps = 24/1156 (2%) Strand=Plus/Plus Query 637 CGGCTGAGTCAACTCG-GCATGTTGTCCTGGTTGACTCGCAGGAGAACGGTGTGCGTCTC 695 |||||||||||||||| || |||| ||||||||||||| || ||||||||||| ||| | Sbjct 730 CGGCTGAGTCAACTCGTGC-TGTTATCCTGGTTGACTCACAAGAGAACGGTGTTCGTTTA 788 Query 696 GTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTTCAGAAAG-AGAATCTGACTGTAGCGGA 754 |||||||||||| ||||||| |||||||| | ||| || | ||| ||||| ||||||| Sbjct 789 GTTCACGCGCTTATGGCTTGTGCTGAAGCAATCCAG-CAGAACAATTTGACTCTAGCGGA 847 Query 755 AGCTCTGGTGAAGCAAATCGGATTCTTAGCCGTTTCTCAAATCGGAGCGATGAGAAAAGT 814 |||||| |||||||||||||||| |||||| || || ||| |||||| ||||||||||| Sbjct 848 AGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCACAAGCCGGAGCTATGAGAAAAGT 907 Query 815 CGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATTTACCGTCTCTCTCCGTCGCAGAG 874 ||||||||| |||||||||||||| || |||||||| ||||| ||||||||| |||||| Sbjct 908 CGCTACTTATTTCGCCGAAGCTCTTGCACGGCGGATCTACCGCCTCTCTCCGCCGCAGAA 967 Query 875 TCCAATCGACCACTCTCTCTCCGATACTCTTCAGATGCACTTCTACGAGACTTGTCCTTA 934 || ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 968 TCAAATCGACCATTCTCTCTCCGATACTCTTCAGATGCACTTTTATGAGACTTGTCCTTA 1027 Query 935 TCTCAAGTTCGCTCACTTCACGGCGAATCAAGCGATTCTCGAAGCTTTTCAAGGGAAGAA 994 ||| || ||||||||||| |||||||||||||||||||| ||||||||| |||| ||||| Sbjct 1028 TCTTAAATTCGCTCACTTTACGGCGAATCAAGCGATTCTTGAAGCTTTTGAAGGTAAGAA 1087 Query 995 AAGAGTTCATGTCATTGATTTCTCTATGAGTCAAGGTCTTCAATGGCCGGCGCTTATGCA 1054 |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| Sbjct 1088 GAGAGTTCATGTCATTGATTTTTCTATGAACCAAGGTCTTCAATGGCCTGCGCTTATGCA 1147 Query 1055 GGCTCTTGCGCTTCGACCTGGTGGTCCTCCTGTTTTCCGGTTAACCGGAATTGGTCCACC 1114 ||||||||||||||| || |||||||| |||||||||||||||||||||||| || Sbjct 1148 AGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAACCGGAATTGGTCCGCC 1207 Query 1115 GGCACCGGATAATT-TCGATTATCTTCATGAAGTTGGGTGTAAGCTGGCTCAT-TTAGCT 1172 ||| |||||||||| | ||| ||||||| || ||||| ||||| | ||||| || || Sbjct 1208 GGCGCCGGATAATTCT-GATCATCTTCACGACGTTGGCTGTAAATTAGCTCAGCTT-GCG 1265 Query 1173 GAGGCGATTCACGTTGAGTTTGAGTACAGAGGATTTGTGGCTAACA-CTTTAGCTGATCT 1231 |||| |||||||||||| || || ||| | ||||| || ||||||| ||| ||| ||||| Sbjct 1266 GAGGTGATTCACGTTGAATTCGAATACCGTGGATTCGTCGCTAACAGCTT-AGCCGATCT 1324 Query 1232 TGATGCTTCGATGCTTGAGCTTAGACCAAGTGAGATTGAATCTGTTGCGGTTAACTCTGT 1291 |||||| ||||||||||| |||||||| ||||||| ||| |||||||||| |||||||| Sbjct 1325 TGATGCGTCGATGCTTGAACTTAGACCGAGTGAGACGGAAGCTGTTGCGGTGAACTCTGT 1384 Query 1292 TTTCGAGCTTCACAAGCTCTTGGGACGACCTGGTGCGATCGATAAGGTTCTTGGTGTGGT 1351 ||||||||| || || ||||| || || || |||| ||| || || ||||| || || || Sbjct 1385 TTTCGAGCTCCATAAACTCTTAGGTCGTCCCGGTGGGATAGAGAAAGTTCTCGGCGTTGT 1444 Query 1352 GAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGAATCGAACCATAATAGTCC 1411 ||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| | || Sbjct 1445 GAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGAACCATAACGGACC 1504 Query 1412 GATTTTCTTAGATCGGTTTACTGAGTCGTTGCATTATTACTCGACGT-TGTTTGACTCGT 1470 | |||||||||| ||||||||||| ||||| ||||| || ||||| | ||||||| |||| Sbjct 1505 GGTTTTCTTAGACCGGTTTACTGAATCGTTACATTACTATTCGAC-TCTGTTTGATTCGT 1563 Query 1471 TGGAAGGTGTACCGAGTGGTCAAGACAAGGTCATGTCGGAGGTTTACTT-GGGTAAACAG 1529 ||||||| || |||||| | |||||||| |||||||| || |||||||| ||| |||||| Sbjct 1564 TGGAAGGAGTTCCGAGTAGCCAAGACAAAGTCATGTCCGAAGTTTACTTAGGG-AAACAG 1622 Query 1530 ATCTGCAA-CGTTGTGGCTTGTGATGGACCTGACCGAGTTGAGCGTCATGAAACGTTGAG 1588 || ||||| | ||||||||||||| || |||||||| || ||| | ||||||||| |||| Sbjct 1623 ATTTGCAATC-TTGTGGCTTGTGAAGGTCCTGACCGGGTCGAGAGGCATGAAACGCTGAG 1681 Query 1589 TCAGTGGAGGAA-CCGGTTCGGGTC-TGCTGGGTTTGCGGCTGCACATATTGGTTCGAAT 1646 ||| ||| |||| |||||| || || | | || |||||| | ||| || | || || || Sbjct 1682 TCAATGG-GGAAACCGGTTTGGTTCGTCC-GGTTTTGCGCCGGCAAATCTCGGGTCTAAC 1739 Query 1647 GCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGT-TCAACGGCGGTGAGGGTTATCGGGT 1705 ||||||||||||||||||||||||||| | ||| | || | || | |||||||| || Sbjct 1740 GCGTTTAAGCAAGCGAGTATGCTTTTGTCAGTGTAT-AATAGTGGCCAAGGTTATCGTGT 1798 Query 1706 GGAGGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACACGACCGCTCAT-AGCCACCT 1764 |||||||| | | || ||| | ||||||||||||||||| || |||||||| | |||||| Sbjct 1799 GGAGGAGAATAATGGATGTTTGATGTTGGGTTGGCACACTCGCCCGCTCATTA-CCACCT 1857 Query 1765 CGGCTTGGAAACTCTC 1780 | |||||||||||||| Sbjct 1858 CCGCTTGGAAACTCTC 1873 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80103785235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5