BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15000.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920406 jgi|Araly1|920406|scaffold_101687.1 1818 0.0
> Ahg920406 jgi|Araly1|920406|scaffold_101687.1
Length=1379
Score = 1818 bits (984), Expect = 0.0
Identities = 1237/1359 (91%), Gaps = 17/1359 (1%)
Strand=Plus/Plus
Query 7 TAGTGGAAATAATGGAGCA-AGCCACTACACTCTTCATATTGCTTTCCACTCTCCTCCTC 65
|||||| ||||||||||| ||| ||||| ||||| | ||||||||||||||| |||||
Sbjct 11 TAGTGGCGATAATGGAGCACGGCC-CTACATTCTTCTTCTTGCTTTCCACTCTCGTCCTC 69
Query 66 GCCGTCTCCGTTGAGTCTCCTCAGCCACCGCTATTTCCCGATGAAGCTCTCCCCACTAAA 125
||||| |||||| ||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 70 GCCGTTTCCGTTAAGTCTCCTCCGCCTCCTCTATTTCCCGATGAAGCTCTCCCCACTAAA 129
Query 126 TCTGGCTACCTCCCGGTTAAACCCGCAC-CCGGCTCGTCCATGTTCTATGCCTTCTACGA 184
|| || ||||| ||||||||||| || | | ||||| | |||||| ||||||||||||||
Sbjct 130 TCCGGATACCTTCCGGTTAAACCAGC-CTCAGGCTCCTTCATGTTTTATGCCTTCTACGA 188
Query 185 AGCCCAAGAGCCAACCACACCTCTTCCTGACACTCCGCTCCTCGTTTGGCTCCAAGGTGG 244
||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 189 AGCCCAAAAGCCGACCACACTTCTTCCCGACACTCCGCTCCTCGTTTGGCTCCAAGGTGG 248
Query 245 GCCAGGCTGCTCTTCAATGATTGGCAACTTTTACGAGCTCGGTCCC-TGGCGTG-TAGTT 302
|||||||||||||||||||||||||||||| ||||||||||| ||| ||||| | || |
Sbjct 249 GCCAGGCTGCTCTTCAATGATTGGCAACTTCTACGAGCTCGG-CCCGTGGCGCGTTA-TG 306
Query 303 TCACGCGCCACAGACCTCGAGCGCAACCCCGGCGCATGGAACCGTCTATTCGGACTACTT 362
||| ||||||| || || ||||||||||| ||||| ||||||||||| || || |||||
Sbjct 307 TCAAGCGCCACTGAGCTTGAGCGCAACCCAGGCGCTTGGAACCGTCTCTTTGGGCTACTC 366
Query 363 TTTGTGGATAACCCAATAGGAGTCGGATTCAGCATCGCAGCCTC-ACAACAAGACATACC 421
|| ||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 367 TTCGTGGATAACCCTATAGGAGTCGGATTCAGCATCGCCTCCTCTA-AACAAGACATACC 425
Query 422 CACAAATCAGAGACAGGTCGCTGAGCATCTTTACGCCGCTCTCGTGGAGTTCCTTGAACA 481
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 426 CACAAATCAGAGACAGGTCGCTGAGCATCTTTACGCAGCTCTCGTGGAGTTCCTTGAGCA 485
Query 482 AAACCCAAGCTTCGAAAACCGACCGGTTTACTTCACTGGAGAGAGCTACGCCGGGAAGTA 541
||||||| |||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 486 AAACCCAGGCTTTGAAAACCGACCGGTTTACTTCACTGGCGAGAGCTACGCTGGTAAGTA 545
Query 542 CGTTCCAGCCATTGGATACTATATCCTTAAAGAGAAACCCAATGGGAAAGTGAATCTAAA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CGTTCCAGCCATTGGATACTATATCCTTAAAGAGAAACCCAATGGGAAAGTGAATCTAAA 605
Query 602 GGGGCTAGCCATTGGAAACGGGCTGACCGA-CCCGGTGACCCAGGTTCAAACCCATGCGG 660
||| |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||
Sbjct 606 GGGCCTAGCCATTGGAAACGGGCTGACCGATCCCG-TGACCCAGGTCCAAACCCATGCGG 664
Query 661 TCAACGTCTACTACTCGGGTCTGGTCAACGCAAAACAGAGAGTTGAACTGCAAAAAGCGC 720
|||| || ||||||||||||||||||||||| |||||||||| |||| || | |||||||
Sbjct 665 TCAATGTTTACTACTCGGGTCTGGTCAACGCTAAACAGAGAGGTGAAGTGGAGAAAGCGC 724
Query 721 AGGAGATATCTGTAGCTCTCGTGAAGTCCCAGAAATGGCGTGAAGCAGCAGACGCGAGGA 780
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 725 AGGAGATAGCCGTAGCTCTCGTGAAGTCACAGAAATGGCGTGAAGCAGCAGACGCGAGGA 784
Query 781 CCGAACTGTTGACGCTACTAAGTAACATGACAGGACTCGCGACGCTCTACAACACGGCAC 840
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 785 CGGAGCTGTTGACGCTACTAAGTAACATGACAGGACTCGCGACGCTATACAACACGGCAC 844
Query 841 GGGCGATTCCATACAGAACAGACCTCGTGGTGGACCT-CTTGAACCAGAGAGAAGCAAAA 899
| ||||||| |||||||||||||||||| ||||||| || ||||||||||| || ||
Sbjct 845 GTTCGATTCCGTACAGAACAGACCTCGTGTTGGACCTTCTA-AACCAGAGAGAGGCTAAG 903
Query 900 CGTGTTTTGGGAGTGAGTGAAACGGTTCGTTTTGAGGAATGTAGTGATGAAGTAGAAGAT 959
|| |||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||
Sbjct 904 CGAGTTTTGGGAGTGAGCGAAACAATGCGTTTTGAGGATTGTAGTGATGAAGTAGAAGAT 963
Query 960 GTGTTGCGGGCAGACGTGATGAAGAGCGTAAAGTTCATGGTGGAGTACGCATTGGAGAGG 1019
||| |||| | ||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 964 GTGCTGCGAGAAGATGTGATGAAGAGCGTTAAGTTCATGGTGGAGTACGCATTAGAGAGG 1023
Query 1020 ACTCAAGTCTTGCTGTATCAAGGTATGCTTGATCTAAGAGACGGCGTCGTTTCGACGGAG 1079
|||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1024 ACTCAAGTGTTGCTGTATCAAGGCATGCTGGATCTAAGAGACGGTGTCGTTTCGACGGAG 1083
Query 1080 GAGTGGATGAAGACTATGAACTGGTCAGGATTGGGAATGTTCTCGACGGCGGAGAGGCGT 1139
|||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| |
Sbjct 1084 GAGTGGGTGAAGACTATGAACTGGTCGGGGTTGGGGATGTTCTCGACGGCGGAGAGGAGG 1143
Query 1140 GTGTGGAAGGATGAAGACGGTGTGGTCGCTGGTTATGTTCAGAGATGGGGGAATTTGTGC 1199
|||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 1144 GTGTGGAAGGATGAAGACGGTGCGGTCGCTGGATATGTTCAAAGATGGGGGAATTTGTGC 1203
Query 1200 CACGTGGCGGTTACAGGAGCTGGTCATTTTGTTCCGACAGATAAAGCTGTGAATTCAAGG 1259
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1204 CACGTGGCGGTTTCAGGAGCTGGACATTTTGTTCCGACAGATAAAGCTGTTAATTCAAGG 1263
Query 1260 GATATGATTGAAGGTTGGGTTTTGGGGAAAGGATTGTTCGGTGGTAA--A-GATGTGAAG 1316
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1264 GATATGATTGAAGGCTGGGTTTTGGGGAAAGGATTGTTCGGTGGTAATGAAGATGTGAAG 1323
Query 1317 CAGACAACTTCGTCGAGCTTATACCATTCAATCTAAATA 1355
||||||| ||| |||||||| ||| |||||||||| |||
Sbjct 1324 CAGACAATTTCATCGAGCTTTTACAATTCAATCTAGATA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5