BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15020.2
Length=1921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471691 jgi|Araly1|471691|fgenesh2_kg.1__1645__AT1G15020.2 3011 0.0
Ahg935831 jgi|Araly1|935831|scaffold_500022.1 1142 0.0
> Ahg471691 jgi|Araly1|471691|fgenesh2_kg.1__1645__AT1G15020.2
Length=1898
Score = 3011 bits (1630), Expect = 0.0
Identities = 1816/1905 (95%), Gaps = 16/1905 (1%)
Strand=Plus/Plus
Query 1 GTCGTAATAAACACCAGAGACCTTTGTTTCTCAACGG---AAGGAGGGAAGCTCTTTTTG 57
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1 GTCGTAATAAACACCAGAGACCTTCGCTTCTCAACGGAACAAGGAGGGAAGCTCTTTTTG 60
Query 58 CTCTTAGATCTTCCCTCTCATCCGGATCAAGCTTCAAAATTTGTATGCTTTATTCGATTT 117
||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||
Sbjct 61 CTCTTAGATCTTCCCTCTCATTCGGATCAAGCTTC-AATTTTGTATGCTTTACTCGATTT 119
Query 118 AATGTCTTTGATACACTTGTTCTTGTT-GTTGGGTCTGCTGAGCCTTGAAGCTGCGGCGT 176
|||| | ||||| |||||||| ||||| | |||||||| |||||||||||||||||||||
Sbjct 120 AATGGCGTTGATTCACTTGTTTTTGTTCG-TGGGTCTGGTGAGCCTTGAAGCTGCGGCGT 178
Query 177 CGTTTTCACCGGGATCGCGCTCGATTCTCCGGGACATCGGCAGTAACGTCGCCGATCAGA 236
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 179 CGTTTTCACCGGGATCGCGCTCGATTCTCCGGGACATCGGCAGCAACAACGCCGATCAGA 238
Query 237 AAGACAACGCTATCGAATTGAACGCTACCAACTTTGATTCAGTTTTCCAAGATTCCCCCG 296
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 239 AAGACAACGCTCTCGAATTAAACGCTACCAACTTTGATTCAGTTTTTCAAGATTCACCCG 298
Query 297 CCAAATATGCCGTTTTAGAGTTCTTCGCTCACTGGTGCCCTGCATGTAGAAACTACAAGC 356
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 CCAAATATGCCGTTTTAGAGTTCTTCGCTCACTGGTGTCCTGCATGTAGAAACTACAAGC 358
Query 357 CACATTATGAAAAAGTTGCAAGGCTATTCAATGGAGCAGACGCAGTATATCCTGGTGTCG 416
|||||||||||||||||||||| || |||||||| |||||||||||| |||||||||| |
Sbjct 359 CACATTATGAAAAAGTTGCAAGACTCTTCAATGGGGCAGACGCAGTACATCCTGGTGTTG 418
Query 417 TTTTGATGACCAGAGTTGATTGTGCGATAAAGATGAATGTAAAGCTTTGTGACAAGTTCT 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 TTTTGATGACCAGAGTTGATTGTGCAATAAAGATGAATGTAAAGCTTTGTGACAAGTTCT 478
Query 477 CTATCAATCATTATCCAATGCTCTTTTGGGCTCCTCCTAAAAGGTTCGTTGGTGGCAGCT 536
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 CCATCAATCATTATCCAATGCTCTTTTGGGCTCCTCCTAAAAAGTTCGTTGGTGGCAGCT 538
Query 537 GGGGACCTAAACAAGAGAAAAATGAGATAAGCGTAGTCAATGAATGGCGCACTGCTGATC 596
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 539 GGGGACCTAAACAAGAGAAAAGTGAGATAAGCGTAGTCGATGAATGGCGCACTGCTGATC 598
Query 597 TTTTGTTGAACTGGATCAACAAGCAGATAGGCAGCTCTTACGGCTTAGATGATCAGAAAT 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTTGTTAAACTGGATCAACAAGCAGATAGGCAGCTCTTACGGCTTAGATGATCAGAAAT 658
Query 657 TAGGAAATCTTC-TGTCAAATATATCTGACCAGGAACAGATTTCTCAGGCCATATTTGAC 715
| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGGAAATC-TCTTGACAAATATATCTGACCAGGAACAGATTTCTCAGGCCATATTTGAC 717
Query 716 ATTGAGGAGGCAACTGAAGAAGCTTTTGATATCATTTTGGCACATAAGGCAATCAAGTCA 775
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 718 ATTGAGGAGGCAACTGAAGAAGCTTTTGATATCATTTTGTCACATAAGGCAATCAAGTCA 777
Query 776 TCTGAAACCAGTGCTTCGTTTATTAGGTTTCTGCAGCTTTTAGTGGCACATCATCCATCA 835
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 778 TCTGAAACCAGTGCTTCGTTTATTAGATTTCTGCAGCTTTTAGTGGCACATCATCCTTCA 837
Query 836 AGAAGGTGCCGTACCGGAAGTGCTGAAATTCTTGTGAATTTTGATGATATATGCCCGTCA 895
|||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 838 AGAAGGTGCCGTACGGGAAGCGCTGAAATTCTTGTGAATTTTGATGATTTATGCCCGTCG 897
Query 896 GGCGAATGCTCGTATGACCAGGAATCTGGAGCGAAAGATTCCCTTCGAAACTTCCATATA 955
||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||||
Sbjct 898 GGCGAATGCTCGTATGACCAGGAATCTGGAGGGAGAGATACCCTACGAAACTTCCATATA 957
Query 956 TGTGGAAAGGATGTTCCGCGTGGATACTACAGGTTTTGCCGTGGCAGCAAAAACGAAACG 1015
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGTGGAAAGGATGTTCCGCGCGGATACTACAGGTTTTGCCGTGGCAGCAAAAACGAAACC 1017
Query 1016 AGGGGATTCAGCTGCGGATTATGGGTTTTGATGCATTCACTTTCCGTGAGGATTGAGGAT 1075
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 1018 AGGGGATTCAGCTGCGGATTATGGGTTTTAATGCATTCGCTTTCAGTGAGGATTGAGGAT 1077
Query 1076 GGAGAAAGTCAGTTTGCATTCACGGCCATTTGTGATTTCATCAACAACTTCTTCATGTGT 1135
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1078 GGAGAAAGTCAGTTTGCATTCACGGCCATTTGTGAGTTCATAAACAACTTCTTCATGTGT 1137
Query 1136 GATGATTGCCGTCGGCATTTTCACGACATGTGCTTAAGCGTCAAAACTCCATTTAAAAAG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATGATTGCCGTCGGCATTTTCACGACATGTGCTTAAGCGTCAAAACTCCATTTAAAAAG 1197
Query 1196 GCACGTGATATTGCG-C-TGTGGCTGTGGAGCACACACAATAAGGTCAATGAGAGACTCA 1253
|| ||||||| | || | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 GCCCGTGATA-T-CGTCTTGTGGCTGTGGAGCACACACAACAAGGTCAATGAGAGACTCA 1255
Query 1254 AGAAGGACGAAGATTCTCTGGGAACAGGAGACCCCAAGTTCCCAAAGATGATATGGCCAC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGAAGGACGAAGATTCTCTGGGAACAGGAGACCCCAAGTTCCCAAAGATGATATGGCCAC 1315
Query 1314 CAAAGCAGCTTTGCCCGTCGTGTTATCTTTCGAGCACCGAGAAAAACATTGACTGGGATC 1373
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CAAAGAAGCTTTGCCCGTCGTGTTATCTTTCGAGCACCGAGAAAAACATTGACTGGGATC 1375
Query 1374 ATGATCAAGTCTACAAGTTCTTGAAGAAGTACTATGGACAGAAACTGGTGTCTGTTTACA 1433
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1376 ATGATGAAGTCTACAAATTCTTGAAGAAGTACTATGGACAGAAACTGGTGTCCGTTTACA 1435
Query 1434 AGAAAAATGGTGAGAGTGTGAGCAAGGAGGAGGTTATTGCAGCTGCAGAAGAGATGGCAG 1493
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1436 AGAAAAATGGTGACAGTGTGAGCAAGGAGGAGGTGGTTGCAGCTGCAGAAGAGATGGCAG 1495
Query 1494 TACCGACCAATGCTCTGGTTGTGCCAGTGGGAGCTGCATTGGCCATAGCACTTGCAAGCT 1553
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TACCGACCAACGCTCTGGTTGTGCCAGTGGGAGCTGCATTGGCCATAGCACTTGCAAGCT 1555
Query 1554 GCGCATTTGGGGCACTAGCCTGCTACTGGAGGACGCAGCAGAAGAACCGGAAGTATAATT 1613
||||||||||||| || || |||||||||||||||||||| ||||||||||||||| |
Sbjct 1556 GCGCATTTGGGGCGCTCGCTTGCTACTGGAGGACGCAGCAAAAGAACCGGAAGTATTACC 1615
Query 1614 ACAATCCGCACTATTTAAAGAGATATAATAGTAATTATATGGTTATGAACACATTCAGTA 1673
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1616 ACAATCCACACTATTTAAAGAGATATAATAGTAACTATATGGTTATGAACACATTCAGTA 1675
Query 1674 ACACTGAAAGTGAAAGGGAAAAGGAGAGATGAGTTAACTTAAAAAGAAAAAGCTCACATG 1733
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1676 ACACTGAAAGTGAAAGGGAAAAGGAGAGATGAGTTAACTTAAA--GAAAAAGCTCACATG 1733
Query 1734 GTTTAACATTCTGAAACTGAGCTTTGTTTTTGTTGTAACTTACAGACAACAGATACAAAG 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1734 GTTTAACATTCTGAAACTGAGCTTTGTTTTTGTTGTAACTTACAGACAACAGACACAAAG 1793
Query 1794 ACGTTGAGGTTGAGATGCCAAAGTCGCCTGCTTCAGGTCCCTTT-C-CTCTTCTCCTCTT 1851
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 1794 ACGTTGAGGTTGAGATGCCAAAGTCGCCTGCTTCAGGTCTCTTTTCTCTCTTCTCCTCTT 1853
Query 1852 ACGGATTGTATAGATTCTTCTCTTCAAATTTTTGGAAAATTCAAT 1896
|| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1854 ACAGATTGTATAGATTCTTCTCTTCGAATTTTTGGAATATTCAAT 1898
> Ahg935831 jgi|Araly1|935831|scaffold_500022.1
Length=1535
Score = 1142 bits (618), Expect = 0.0
Identities = 1157/1412 (82%), Gaps = 57/1412 (4%)
Strand=Plus/Plus
Query 225 TCGCCGATCAGAAAGACAACGCTATCGAATTGAACGCTACCAACTTTGATTCAGTT-TTC 283
|||||||||| |||||||| ||| | ||||||||| |||||||||| ||||||||| ||
Sbjct 109 TCGCCGATCAAAAAGACAAAGCTGTTGAATTGAACACTACCAACTTCGATTCAGTTCTT- 167
Query 284 CAAGATTCCCCCGCCAAATATGCCGTTTTAGAGTTCTTCGCTCACTGGTGCCCTGCATGT 343
|||| |||| ||||| |||||||| | || ||||||||||||||||| ||||| |||
Sbjct 168 AAAGACACCCCTGCCAAGTATGCCGTCGTCGAATTCTTCGCTCACTGGTGTCCTGCCTGT 227
Query 344 AGAAACTACAAGCCACATTATGAAAAAGTTGCAAGGCTATTCAATGGAGCAGACGCAGTA 403
|||||||||||||| ||||| || || || |||||||| ||||||||| |||| ||| ||
Sbjct 228 AGAAACTACAAGCCTCATTACGAGAAGGTCGCAAGGCTCTTCAATGGACCAGATGCAATA 287
Query 404 TATCCTGGTGTCGTTTTGATGACCAGAGTTGATTGTGCGATAAAGATGAATGTAAAGCTT 463
|||| || ||||||||||||| |||||||||||||| ||||||| |||| || ||
Sbjct 288 CATCCCGGAATCGTTTTGATGACTAGAGTTGATTGTGCAATAAAGACGAATACCAACCTC 347
Query 464 TGTGACAAGTTCTCTATCAATCATTATCCAATGCTCTTTTGGGCTCCTCCTA-AAAGGTT 522
||||||||||||||| | ||||||||||||||||||||||| |||||||| ||| |||
Sbjct 348 TGTGACAAGTTCTCTGTTTCTCATTATCCAATGCTCTTTTGGGGTCCTCCTATAAA-GTT 406
Query 523 CGT-TGGTGGCAGCTGGGGACCTAAACAAGAGA-AAAATGAGATA-AGCGTAGTCAATGA 579
|| | |||||| |||| ||||||| ||| || |||| | |||| | | | || | |||
Sbjct 407 TGTCT-CTGGCAGTTGGGAACCTAAA-AAG-GATAAAA-GCGATATA-C-TTGTTATTGA 460
Query 580 --ATGG-CGCACTGCTGATCTTTTGTTGAACTGGATCAACAAGCAGATAGGCAGCTCTTA 636
|||| ||||||||||| | |||| | |||||||| ||||||||||| ||||| |||||
Sbjct 461 TGATGGCCGCACTGCTGAGCGTTTGCTCAACTGGATTAACAAGCAGATTGGCAGTTCTTA 520
Query 637 CGGCTTAGATGATCAGAAATT-----AGGAA-AT-CTTCTGTCAAATATATCTGACCAGG 689
||||| |||||||||||||| | ||| || | ||||| |||||| | ||| |
Sbjct 521 TGGCTTGGATGATCAGAAATTCGAAAACGAACATGC-CCTGTCGAATATAACCGACTA-C 578
Query 690 AA-CAGATTTCTCAGGCCATATTTGACATTGAGGAGGCAACTGAAGAAGCTTTTGATATC 748
|| |||||||||||||| | | |||| | ||||| ||||| | |||||| |||||||||
Sbjct 579 AACCAGATTTCTCAGGCTGTGTATGACGTCGAGGAAGCAACCGCAGAAGCGTTTGATATC 638
Query 749 ATTTTGGCACATAAGGCAATCAAGTCATCTGAAACCA-GTGCTTCGTTTATTAGGTTTCT 807
||||| ||||||||||| || ||||||||||||| || ||||||| ||||| || ||| |
Sbjct 639 ATTTTAGCACATAAGGCCATTAAGTCATCTGAAA-CAGGTGCTTCATTTATAAGATTTAT 697
Query 808 GCAGCTTTTAGTGGCACATCATCCATCAAGAAGGTGCCGTACCGGAAG-TGCTGAAATTC 866
|||||| ||| |||||||||| || || ||||| || | || || ||| |||||||
Sbjct 698 CCAGCTTCTAGCAGCACATCATCTTTCCAGGAGGTGTCGGAAAGG-AGCTGCAGAAATTC 756
Query 867 TTGTGAATTTTGATGATATATGCCCGTCAGGCGAA-TGCTCGTATGACCAGGAATCTGGA 925
| ||||| | ||||||| ||||||| || || || ||||| | | || | ||||||||
Sbjct 757 TAGTGAACTATGATGATTTATGCCCTTCTGG-AAATTGCTC-T-T-ACGAAAAATCTGGA 812
Query 926 GCGAAAGATTCCCTTCGAAACTTCCATATATGTGGAAAGGATGTTCCGCGTGGATACTAC 985
| ||| ||| |||| | || |||| ||| |||||||||||||||||||||||||||||
Sbjct 813 GGGAACGATACCCTGAGGAATTTCCCTATTTGTGGAAAGGATGTTCCGCGTGGATACTAT 872
Query 986 AGGTTTTGCCGTGGCAGCAAAAACGAAACGAGGGGATTCAGCTGCGGATTATGGGTTTTG 1045
| |||||||||||||||||| ||||| || | ||||||||||| |||||||||||| ||
Sbjct 873 ATGTTTTGCCGTGGCAGCAAGAACGATACTCGCGGATTCAGCTGTGGATTATGGGTTCTG 932
Query 1046 ATGCATTCACTTTCCGTGAGGATTGAGGATGGAGAAAGTCAGTTTGCATTCACGGCCATT 1105
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 933 ATGCATTCACTTTCCGTGAGAATTGAGGATGGAGAAAGTCATTTTGCATTCACGGCAATA 992
Query 1106 TGTGATTTCATCAACAACTTCTTCATGTGTGATGATTGCCGTCGGCATTTTCA-CGACAT 1164
|| || ||| ||||||||||||||||||||||||| ||||| | |||||| || ||||||
Sbjct 993 TGCGACTTCGTCAACAACTTCTTCATGTGTGATGAATGCCGCCTGCATTT-CAACGACAT 1051
Query 1165 GTGCTTAAGCGTCAAAACTCCATTT-AAAAAGGCACGTGATATTGCGC-T-GTGGCTGTG 1221
|||||| |||||||||||||| ||| ||||||||||||||| || || | |||| ||||
Sbjct 1052 GTGCTTGAGCGTCAAAACTCC-TTTCAAAAAGGCACGTGAT-TT-CGTATTGTGGGTGTG 1108
Query 1222 GAGCACACACAATAAGGTCAATGAGAGACTCAAGAAGGACGAAGATTCTCTGGGAACAGG 1281
|||||||||||| |||||||| |||||||||| ||| ||||||| |||||| || |||||
Sbjct 1109 GAGCACACACAACAAGGTCAACGAGAGACTCATGAAAGACGAAGCTTCTCTTGGTACAGG 1168
Query 1282 AGACCCCAAGTTCCCAAAGATGATATGGCCACCAAAGCAGCTTTGCCCGTCGTGTTATCT 1341
|||||||||||||| ||||| ||||||||||||||| |||||||||| | |||||||||
Sbjct 1169 TGACCCCAAGTTCCCCAAGATTATATGGCCACCAAAGGAGCTTTGCCCATTGTGTTATCT 1228
Query 1342 TTCGAGCA-CCGAGAAAAACATTGACTGGGATCATGATCAAGTCTACAAGTTCTTGAAGA 1400
|| || | || |||||| ||| || ||||| || || || |||||||||||||||||||
Sbjct 1229 CTCAAGTAACC-AGAAAAGCATAGAGTGGGACCACGACCATGTCTACAAGTTCTTGAAGA 1287
Query 1401 AG-TACTATGGACAGAAACTGGTGTCTGTTTACAAGAAAAATG-GTGAGAGTGTGAGCAA 1458
| |||||||| | || || || || |||||||| |||| | ||| || | ||||||
Sbjct 1288 -GCTACTATGGGCCTAAGCTCGTCTCCCTTTACAAGGAAAA-GAGTGTCAGCGGGAGCAA 1345
Query 1459 GGAGGAGGTTAT-TGCAGCTGCAGAAGAGATGGCAGTA-CCGACCAATGCTCTGGTTGTG 1516
||| ||| | | |||| | ||||| || |||| || ||||| ||||||||||||
Sbjct 1346 GGAAGAGACCGTCT-CAGCCACTGAAGACTTGACAGTGGCC-ACCAACGCTCTGGTTGTG 1403
Query 1517 CC-AGTGGGAGCTGCATTGGCCATAGCACTT-GCAAGCTGCGCATTTGGGGCACTAGCCT 1574
|| | ||| ||| |||||||| ||||| | | || ||||| ||||||||||| || ||||
Sbjct 1404 CCGATTGG-AGCAGCATTGGCAATAGC-CATCGCCAGCTGTGCATTTGGGGCGCTTGCCT 1461
Query 1575 GCTACTGGAGGACGCAGCAGAAGAACCGGAAG 1606
| ||||||||||| |||||||||||||| |||
Sbjct 1462 GTTACTGGAGGACACAGCAGAAGAACCGCAAG 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72181014275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5