BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15030.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920409 jgi|Araly1|920409|scaffold_101690.1 1685 0.0
Ahg484037 jgi|Araly1|484037|fgenesh2_kg.5__29__AT2G01260.1 425 4e-118
Ahg346633 jgi|Araly1|346633|fgenesh1_pg.C_scaffold_5000025 425 4e-118
> Ahg920409 jgi|Araly1|920409|scaffold_101690.1
Length=1124
Score = 1685 bits (912), Expect = 0.0
Identities = 1047/1113 (94%), Gaps = 5/1113 (0%)
Strand=Plus/Plus
Query 360 AAGAGAGATGTTGGGAGCTGGATTTAACTTCACTCAGCTTCAGAGAGCTCAAATTGACGT 419
||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||
Sbjct 14 AAGAGAGATGTTGGGAGCTGGATTTCAGTTGACTCAGCTTCAGAGAGCTCAAAGAGACGT 73
Query 420 CTCTTATGGCTGCAGATCGAGTCACACTAAGGATCGTGAGAACGGCTCTGCATTGTTGAA 479
|| ||||||| ||||||||| |||||||||||| || |||||||||||||||||| |||
Sbjct 74 CTTTTATGGCGGCAGATCGATTCACACTAAGGAACGCGAGAACGGCTCTGCATTGCAGAA 133
Query 480 ACACCATGTTTCTGAGGCATCGTCAAGTAATGTGGAACGGTTTTTGGATTCGGTGACACC 539
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 134 ACACCATGTTTCTGAGGCATCTTCAAGTAATGTGGAACGGTTTTTGGAGTCGGTGACACC 193
Query 540 ATCTGTTCCGGCTCACTATTTATCTAAGACAATAGTTAGGGAAA-GAGGAGGCAGTGATG 598
|||||| |||||||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 194 ATCTGTGCCGGCTCACTGTTTATCTAAGACAACAGTTAGGGAAAGGA-GAGGCAGTGACA 252
Query 599 TTGAGTCTCAAGTTCCTTATTTTCTTCTTGGAGATGTATGGGAATCGTTTGCAGAGTGGA 658
||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 253 TTGAGTCGCAAGTTCCTTACTTTGTTCTTGGAGATGTATGGGAATCGTTTGCAGAGTGGA 312
Query 659 GTGCTTATGGCATTGGAGTTCCTCTCACTTTGAATAACAATAAAGATCGTGTCTTTCAAT 718
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 313 GTGCTTATGGCATTGGAGTTCCTCTCACTTTGAATAACAATAAAGATCGAGTCTTTCAAT 372
Query 719 ACTACGTGCCCTCGCTTTCTGGTATTCAAGTATACGCTGATGTTGATGCTTTAACTTCAT 778
| || ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 373 ATTATGTGCCTTCGCTTTCCGGTATTCAAGTATATGCTGATGTTGATGCTTTAACTTCAT 432
Query 779 CTCTTCAAGCAAGGCGGCAAGGTGAGGAGAGCGAAAGCGATTTTAGGGATTCAAGTAGTG 838
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 433 CTCTTCAAGCAAGGCGGCAAGGGGAGGAGAGCGAAAGCGATTTCAGGGATTCAAGTAGTG 492
Query 839 AAGGAAGCAGTAGTGAATCTGAAAGAGGACTCTGTTATTCAAAAGAGCAGATCTCCGCTA 898
||||||||||||||||||| ||||||||||| | |||| |||||||||||||||| ||||
Sbjct 493 AAGGAAGCAGTAGTGAATCCGAAAGAGGACTTTCTTATCCAAAAGAGCAGATCTCTGCTA 552
Query 899 GAATGGACAAACTCTCCTTAAGAAAGGAGCATCAAGAAGATTCGTCTAGTGATGATGGCG 958
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 553 GAATGGACAAACTCTCGTTAAGAAAGGAGCATCACGAAGATTCGTCTAGTGATGATGGCG 612
Query 959 AGCCTTTAAGCTCTCAAGGTCGTTTGATATTTGAGTATCTTGAACGTGATCTTCCTTACG 1018
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AGCCTTTAACCTCTCATGGTCGTTTGATATTTGAGTATCTTGAACGTGATCTTCCTTACA 672
Query 1019 TCCGTGAACCCTTTGCCGACAAGATGTCTGACCTTGCCTCTAGATTTCCCGAGCTGAAGA 1078
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 673 TCCGTGAACCCTTTGCCGACAAGATGTCTGACCTTGCCTCTAGATTTTCCGAGCTGAATA 732
Query 1079 CGCTAAGAAGCTGTGATTTGCTTCCTTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTT 1138
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 733 CGCTAAGAAGCTGTGATTTACTACCTTCAAGCTGGTTTTCTGTGGCATGGTACCCAATAT 792
Query 1139 ACAAAATACCCACAGGACCGACACTCAAGGATCTGGATGCTTGTTTCTTGACCTATCATT 1198
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 793 ACAAGATACCCACAGGACCGACCCTCAAGGATCTGGATGCTTGTTTCTTGACTTATCATT 852
Query 1199 CCCTTCACACACCCTTTCAAGGTCCAGGCGTTACAACAGGGTCTATGCATGTGGTGCAGC 1258
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 853 CCCTTCACACACCCTTTCAATGTCCAGGAGTTACAACAGGGTCTATGCATGTGGTGCAGC 912
Query 1259 CAAGGGAAAGTGTTGAGAAGATGGAACTGCCTGTCTTTGGTCTCGCCTCATACAAGTTGA 1318
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 913 CAAGGGAAAGTGTTGAGAAGATGGAACTGCCTGCCTTTGGTCTCGCCTCATACAAGTTGA 972
Query 1319 GAGGTTCTGTATGGACAAGCTTT-GGTGGCTCGGGCCACCAGCTCGCGAACTCTCTCTTC 1377
||||||||||||||||| |||| || ||||| || |||||| ||| |||||| ||||||
Sbjct 973 GAGGTTCTGTATGGACAGGCTTCAGG-GGCTCTGGACACCAGGTCGTGAACTCCCTCTTC 1031
Query 1378 CAAGCCGCAGATAATTGGCTGAGGTTGCGTCAAGTCAACCATCCTGATTTCATCTTCTTC 1437
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1032 CAAGCCGCAGACAATTGGCTGAGGTTGCGTCAAGTCAACCATCCAGATTTCATCTTCTTC 1091
Query 1438 TGCCGCCGGTAATGATA-GATTATACTATGATG 1469
|||||||||||||||| |||||||||||||||
Sbjct 1092 TGCCGCCGGTAATGATGTGATTATACTATGATG 1124
> Ahg484037 jgi|Araly1|484037|fgenesh2_kg.5__29__AT2G01260.1
Length=1643
Score = 425 bits (230), Expect = 4e-118
Identities = 429/521 (82%), Gaps = 30/521 (6%)
Strand=Plus/Plus
Query 934 GAAGATTCGTCTAGTGATGATGGCGAGCCTTTAAGCTCTCAAGGTCGTTTGATATTTGAG 993
|||||||| || |||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 942 GAAGATTCATCCAGTGATGATGGCGAACCTTTAGGCTCTCAAGGTCGTTTGATGTTTGAG 1001
Query 994 TATCTTGAACGTGATCTTCCTTACGTCCGTGAACCCTTT-GCCGACAAGATGTCTGACCT 1052
||||||||| | || ||||| ||| |||||||| ||||| ||||||||| | | ||| ||
Sbjct 1002 TATCTTGAAAGAGACCTTCCATACATCCGTGAA-CCTTTGGCCGACAAGGTCTTTGATCT 1060
Query 1053 TGC--CTCTAGATTTCCCGAGCTGAAGACGCT-AAGAAGCTGTGATTTGCTTCCTTCAAG 1109
||| ||| || |||||||||||| |||||| || ||||||||| || ||||| |||||
Sbjct 1061 TGCAGCTC-AG-TTTCCCGAGCTGTTGACGCTGAA-AAGCTGTGACTTACTTCCGTCAAG 1117
Query 1110 CTGGTTTTCTGTGGCATGGTACCCAATTTACAAAATACCCACAGGACCGACACTCAAGGA 1169
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1118 CTGGTTTTCTGTGGCATGGTACCCAATTTACAGAATACCCACAGGACCGACATTGAAGGA 1177
Query 1170 TCTGGATGCTTGTTTCTTGACCTATCATTCCCTTCACACACCCTT-TCAAGGTCCAGGC- 1227
|||||||||||||||||||| ||||||||||| |||||||| || | |||| || |
Sbjct 1178 CCTGGATGCTTGTTTCTTGACTTATCATTCCCTACACACACC-TTCTGGAGGTAAAGCCA 1236
Query 1228 GTTACAACAGGGTCTATG--CATGTGGTGCAGCCAAGGGAAAGTGTTGAGAAGATGGAAC 1285
|| || || || ||| | | | ||||| ||||||| |||| |||||||| |
Sbjct 1237 GTG-CA-CAA--TCAATGAGCCT-TA-TGCAGGCAAGGGAGAGTG---AGAAGATGTCAT 1287
Query 1286 TGCCTGTCTTTGGTCTCGCCTCATACAAGTTGAGAGGTTC-TGTATGGACAAGCTTTGGT 1344
||||||| ||||| || || ||||||||||| |||||||| | |||||||| | ||||
Sbjct 1288 TGCCTGTGTTTGGGCTTGCTTCATACAAGTTCAGAGGTTCAT-TATGGACACCCATTGGG 1346
Query 1345 GGCTCGG-GCCACCAGCTCGCGAACTCTCTCTTCCAAGCCGCAGATAATTGGCTG-AGG- 1401
|| |||| || ||||||||| ||||||||| ||||||||||| || || |||||| |
Sbjct 1347 GGTTCGGAGC-ACCAGCTCGTGAACTCTCTGTTCCAAGCCGCTGAGAAGTGGCTGCATTC 1405
Query 1402 TTGCGTCAAGTCAACCATCCTGATTTCATCTTCTTCTGCCG 1442
||| ||| || | ||| ||||||||| |||||||||||||
Sbjct 1406 TTG--TCATGTGAGCCACCCTGATTTCCTCTTCTTCTGCCG 1444
> Ahg346633 jgi|Araly1|346633|fgenesh1_pg.C_scaffold_5000025
Length=783
Score = 425 bits (230), Expect = 4e-118
Identities = 433/528 (82%), Gaps = 26/528 (5%)
Strand=Plus/Plus
Query 928 CATCAAGAAGATTCGTCTAGTGATGATGGCGAGCCTTTAAGCTCTCAAGGTCGTTTGATA 987
||||| |||||||| || |||||||||||||| ||| |||||||||| ||| ||||||||
Sbjct 268 CATCAGGAAGATTCATCCAGTGATGATGGCGAACCTATAAGCTCTCAGGGTAGTTTGATA 327
Query 988 TTTGAGTATCTTGAACGTGATCTTCCTTACGTCCGTGAACCCTTT-GCCGACAAGATGTC 1046
||||||||||||||| | || ||||| ||| |||||||| ||||| ||||||||| | |
Sbjct 328 TTTGAGTATCTTGAAAGAGACCTTCCATACATCCGTGAA-CCTTTGGCCGACAAGGTCTT 386
Query 1047 TGACCTTGC--CTCTAGATTTCCCGAGCTGAAGACGCT-AAGAAGCTGTGATTTGCTTCC 1103
|||||| || ||| || |||||||||||| |||||| || ||| ||||| || |||||
Sbjct 387 TGACCTCGCAGCTC-AG-TTTCCCGAGCTGTTGACGCTGAA-AAGTTGTGACTTACTTCC 443
Query 1104 TTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTTACAAAATACCCACAGGACCGACACT 1163
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 444 GTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTTACAGAATACCCACAGGACCGACACT 503
Query 1164 CAAGGATCTGGATGCTTGTTTCTTGACCTATCATTCCCTTCACACACCCTTTCAAGGTCC 1223
|||||| |||||||||||||||||||| ||||||||||| |||||||| | | ||||
Sbjct 504 CAAGGACCTGGATGCTTGTTTCTTGACGTATCATTCCCTACACACACCGTCTGGAGGTGA 563
Query 1224 AGGC-GTTACAACAGGGTCTATG--CATGTGGTGCAGCCAAGGGAAAGTGTTGAGAAGAT 1280
|||| || || || || ||| | | | |||||||||||| |||| | |||||
Sbjct 564 AGGCAGTG-CA-CAA--TCAATGAGCCT-TAC-GCAGCCAAGGGA--GTGTC-ATAAGAT 614
Query 1281 GGAACTGCCTGTCTTTGGTCTCGCCTCATACAAGTTGAGAGGTTCTGTATGGACAAGCTT 1340
| | ||||||| ||||| ||||| ||||||||||| ||||||||| |||||||| |
Sbjct 615 GTCATTGCCTGTGTTTGGGCTCGCTTCATACAAGTTCAGAGGTTCTTTATGGACACCCGA 674
Query 1341 TGGTGGCTCGG-GCCACCAGCTCGCGAACTCTCTCTTCCAAGCCGCAGATAATTGGCTGA 1399
||| || | || || ||||||||| ||||||||| |||||||| || || || ||| ||
Sbjct 675 TGGGGGTTTGGAGC-ACCAGCTCGTGAACTCTCTGTTCCAAGCTGCTGAAAAGTGGTTGC 733
Query 1400 GGTTGCGT--CAAGTCAACCATCCTGATTTCATCTTCTTCTGCCGCCG 1445
| || | | || |||| ||| ||||| ||| ||||||||||||||||
Sbjct 734 G-TT-CTTATCATGTCAGCCACCCTGACTTCCTCTTCTTCTGCCGCCG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5