BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15040.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471694 jgi|Araly1|471694|fgenesh2_kg.1__1648__AT1G15040.1 2050 0.0
> Ahg471694 jgi|Araly1|471694|fgenesh2_kg.1__1648__AT1G15040.1
Length=1398
Score = 2050 bits (1110), Expect = 0.0
Identities = 1307/1403 (93%), Gaps = 9/1403 (1%)
Strand=Plus/Plus
Query 4 CAATTAAGAAAGAGAGGATTAAGACATAAACAAGACAAAACAAGAAGAAGAG-ATT-TAT 61
||| |||||||||||| ||||||||||||||||||| ||| ||||| ||||| ||| |
Sbjct 1 CAAATAAGAAAGAGAGAATTAAGACATAAACAAGAC-AAA-AAGAAAAAGAGAATTAAAA 58
Query 62 TTATTACATAAAAATGGTTGTCGCCAATGATCTCTCGTCCAAGATTCTCCCCAGAGTTCT 121
||| |||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||
Sbjct 59 TTAGTACATAAAAATGGTGGTCGCTAATGATCTCTCGCCCAAGATTCACCCCAGAGTTCT 118
Query 122 CATCGTCTCTCGTCGGACTCTCCGCAAGAACAAGTACGTGGACTTCGTAGGAGAATACCA 181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 CATCGTCTCTCGTCGGACTCTCCGTAAGAACAAGTACGTGGACTTCGTAGGAGAATACCA 178
Query 182 TCTCGATCTCATCGTCTCCTCCGGTGCCGTCCCTGTCATTGTCCCACGTGTCAATGGGAT 241
|||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 179 TCTCGATCTCATTGTCTCCTCCGGTGCCGTCCCTGTCATCGTGCCTCGTGTCAATGGGAT 238
Query 242 CCATTCTATGCTCCAGAGCTTCGAGCCTATTCATGGTGTCCTCCTCTGCGAAGGAGAAGA 301
||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 239 CCATTCTATGCTCCAGAGCTTCGAGCCCATCCATGGCGTCCTTCTCTGCGAAGGAGAAGA 298
Query 302 TGTCGATCCTTCTCTCTACGCGGACG-ATGAATTATCAGACCTCTCGCCAGAAGACATGG 360
||| |||||||||||||| || |||| | |||| |||| ||||| || ||||||||||
Sbjct 299 TGTAGATCCTTCTCTCTATGCCGACGCA-GAATCCTCAGGTCTCTCACCGGAAGACATGG 357
Query 361 AGGAGATTAAGAAGGCGCATGCAGAGGACATGACCATCGACCGAGAGAAAGACAGCATTG 420
||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 AGGAGATCAAGAAGGTGCATGCAGGGGACATGACCATCGACCGAGAGAAAGACAGCATTG 417
Query 421 AGCTGACTCTAGCTAGACTCTGTCTCGAAAGAAACATTCCTTTCTTAGGCATTTGTCGTG 480
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 AACTGACCCTAGCTAGACTCTGTCTTGAAAGAAACATTCCTTTCTTAGGCATTTGTCGTG 477
Query 481 GCTCTCAGATTCTCAACGTTGCCGCAGGTGGAACTCTTTACCAAGACATCGACAAAGAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCTCTCAGATTCTCAACGTTGCCGCAGGTGGAACTCTTTACCAAGACATCGACAAAGAAC 537
Query 541 TCGGAACTACGATGACAACGACAAATCATATAGATTATGACAACTACGATGGGCACAGAC 600
|||||||||| | || ||||| || |||||||||||||||||||||||||||||||| |
Sbjct 538 TCGGAACTACAACAACGACGACTAAGCATATAGATTATGACAACTACGATGGGCACAGGC 597
Query 601 ACGAGGCTAGAATCGTGGAGGAGACTCCGTTACATAAGTTGTTCGAGGAGATGGAGATAA 660
||||||||||||||||||||||||| ||||| |||| | ||||| |||||||||||||||
Sbjct 598 ACGAGGCTAGAATCGTGGAGGAGACGCCGTTGCATACGCTGTTCAAGGAGATGGAGATAA 657
Query 661 TGGTGAACTCGTATCACCATCAAGGTGTGAAGAGACTGGCTCAACGTTTTGTGCCGATGG 720
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 658 TGGTGAACTCGTATCACCATCAAGGTGTGAAGAGACTGGCGCAACGTTTTGCGCCCATGG 717
Query 721 CTTATGCTCCTGATGGTTTGATTGAAGGATTTTATGATCCGAATCGATATGATCCAAAGG 780
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 CTTACGCTCCTGATGGTTTGATTGAAGGATTTTATGATCCGAATCGCTATGATCCAAAGG 777
Query 781 AAGGTCAGTTCTTGATGGGTCTGCAGTTTCATCCAGAGAGGATGAGGCTTCCAGGCTCTG 840
||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 778 AAGGTCAATTCTTGATGGGTCTGCAGTTTCATCCCGAGAGGATGAGGCTTTCGGGCTCTG 837
Query 841 ATGAGTTTGATTATCCAGGCTGCGCTTTAGTTTATCAGGAGTTTGTGAAAGCTGTGATCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGAGTTTGATTATCCAGGCTGCGCTTTAGTTTATCAGGAGTTTGTGAAAGCTGTGATCG 897
Query 901 CATTTCAGAAGAAACAAGTAAACGCAACACAGGTTGAGATGAAGAGGAAGACCACCACAC 960
|||||||||||||||||||||||||||||||| | ||||||||||| ||||| || || |
Sbjct 898 CATTTCAGAAGAAACAAGTAAACGCAACACAGATGGAGATGAAGAGAAAGACAACGACGC 957
Query 961 TCGTCAAAAGCTTCTCCCAAGCTGAGTTTCTAGAGGCTAATACAGTTCTAAGCAAGCAAC 1020
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct 958 TCGTCAAAAGCTTCTCCCAAGCCGAGTTTCTAGAGGTTAATACGGTTCTAAGCAAGCAAC 1017
Query 1021 AAGAGAATAGGCTGAAGCAGATGGGAGCGACGGTGAGGAACTCATGTGTGTATATGAAAA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAGAGAATAGGCTGAAGCAGATGGGAGCGACGGTGAGGAACTCATGTGTGTATATGAAAC 1077
Query 1081 GGATGAAAATGAAAGAGGAACAAGAGAGAGCAATGGACAAACTTTCGGCGGAGCGGCTGT 1140
||||||||| ||||||||| || |||||||||||||||||| |||| ||||||||| |||
Sbjct 1078 GGATGAAAAGGAAAGAGGAGCAGGAGAGAGCAATGGACAAATTTTCCGCGGAGCGGTTGT 1137
Query 1141 CTGATATGCTTTCCTTCCACCATATGATGGCTCGTCTTTGCTCCAATGCCATCAAGAGAA 1200
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1138 CTGATCTGCTTTCCTTCCACCATATGATGGCTCGTCTTTGCTCCGATGCCATCAAGAGGA 1197
Query 1201 AACTACTAGAACCCGAA-CACACAGATAGGACCATAGAGTCCTCCTTTTTTCTCAACTAT 1259
||||||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||
Sbjct 1198 AACTACTAGAACCCGAAGC-CACAGATAGGACCATTGAATCCTCTTTTTTTCTCAACTAT 1256
Query 1260 TAGCCTTTATTGCAAAAACAGTTTTACACACAATAAGAAAACTAGCATTCTGTGAATTTA 1319
|||| ||||||||||||||||| ||||||| ||||||||||||||||||| ||| | |||
Sbjct 1257 TAGCTTTTATTGCAAAAACAGTGTTACACATAATAAGAAAACTAGCATTCCGTGCACTTA 1316
Query 1320 CAGAAGCTACCAAATGAAAAACTTTTGACAGTATCCTATATGTAAGGTTTCCTCAAGACA 1379
||||||||||||| |||||| |||||||| |||||||||||||| |||||||||| ||||
Sbjct 1317 CAGAAGCTACCAACTGAAAA-CTTTTGACGGTATCCTATATGTATGGTTTCCTCAGGACA 1375
Query 1380 GTAATCATAAAGAGTTCCTTTTT 1402
|||||||||||||||||||||||
Sbjct 1376 GTAATCATAAAGAGTTCCTTTTT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5