BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15100.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471698 jgi|Araly1|471698|fgenesh2_kg.1__1652__AT1G15100.1 848 0.0
> Ahg471698 jgi|Araly1|471698|fgenesh2_kg.1__1652__AT1G15100.1
Length=662
Score = 848 bits (459), Expect = 0.0
Identities = 628/701 (90%), Gaps = 45/701 (6%)
Strand=Plus/Plus
Query 31 aagaTGGGGCTACAAGGTCAGCTAAGTGACGTCTCTTCCGATTCAATCCCTCTTATGctc 90
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGATGGGGCTACAAGGTCAGCTAAGTGACGTCTCTTCCGATTCAATCCCTCTTATGCTA 60
Query 91 ctctctctcctcgccgtcttcatcaaccatctccgatctttcctcctccgtctcacctct 150
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 61 ATCTCTCTCCTCGCCGTCTTCATCAACCATGTCCGATCTTTCCTTCTCCGTCTCACCGCT 120
Query 151 AAATCAAATCCTAATCTCCCCGTAGACGATGTCTCTATAGCATCGGGACTAGCCAACATA 210
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATCAAATCCTAATCTCCCCGTCGACGATGTCTCTATAGCATCGGGACTAGCCAACATA 180
Query 211 ATCGTTCTCGCCGATCAGCTTAGTTTGAATCGGTTATTCTCGTACCGGTGCGGTGACGGA 270
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGTGCTCGCCGATCAGCTGAGCTTGAATCGGTTATTCTCGTACCGGTGCGGTGACGGA 240
Query 271 GGTGGTGGCGGCTCCGATTGTGTTGTGTGTTTGTCGAAG-TTAAAGGAAGGTGAAGAGGT 329
|| || | ||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 241 GGAGG-G-----TCCGATTGTGTGGTGTGTTTGTCGAAGCTTAA-GGAAGGTGAAGAGGT 293
Query 330 GAGGAAGCTGGAATGTCGACACGTGTTCCACAAGAAGTGTTTGGAAGGATGGCTTCATCA 389
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 294 GAGGAAGCTGGAATGTCGACACGTGTACCACAAGAAGTGTTTAGAAGGATGGCTTCATCA 353
Query 390 ATTCAATTTCACTTGTCCTCTTTGTAGATCTGCTTTGGTTTCCGATGATTGCGTCTCTAA 449
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 354 ACTCAATTTCACTTGTCCTCTTTGTAGATCTGCTTTGGTCTCCGATGATTGCGTCTCTAA 413
Query 450 AACGCAGCGTAGCGTTGGGAGGGATTTGATCTCGTGTTTCTCTCTCCACTGAGTAAAAGA 509
||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 AACGCAGCGCCGCGTTGGAAGGGATTTGATCTCGTGTTTCTCTCTCCACTGAGT------ 467
Query 510 TCGGAAGATGAAGAAGATCCGATGGTATCTGAGAGATCTACGGTGGCTGGCTGGTTCGGT 569
| ||| ||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 468 T-------TGA------TCCGACGGCATCCGAGAGATCTACGGTGGCTGGCTGGTTCGGT 514
Query 570 TTGACCACGCGCGTGCGCCCCTTCTTTTCTCGGAtttttttt--gaggtctctttcttct 627
||||||||||| ||| ||| |||||||||||| |||||||| ||||||||| ||||||
Sbjct 515 TTGACCACGCG--TGC-CCC-TTCTTTTCTCGGTTTTTTTTTTTGAGGTCTCTCTCTTCT 570
Query 628 gtgagaggaga--accttttgtttgtttggtttttttttttACTTTTCGATTTGGAATAT 685
||||||||||| ||||||| | ||||| |||||| |||| ||||||| | | |
Sbjct 571 GTGAGAGGAGAGGACCTTTT-T--GTTTG-TTTTTTC----ACTTCTCGATTTCGTTT-T 621
Query 686 GTAAATTTTGAA-TATACAAATTTTCACCGTTTGTATCTTT 725
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 622 GTAAATTTTGAAATATACAAATTTTCACCGTTTGTATCTTT 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5