BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15125.1 Length=1056 Score E Sequences producing significant alignments: (Bits) Value Ahg334804 jgi|Araly1|334804|fgenesh1_pg.C_scaffold_1001369 1650 0.0 > Ahg334804 jgi|Araly1|334804|fgenesh1_pg.C_scaffold_1001369 Length=1065 Score = 1650 bits (893), Expect = 0.0 Identities = 1009/1064 (95%), Gaps = 11/1064 (1%) Strand=Plus/Plus Query 1 ATGAACGGTGGAGACGGTGCTTCTAGCTATGCTCGCAACTCTTCCTATCAGAGGGGAGCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAACGGTGGAGACGGTGCTTCTAGCTATGCTCGCAACTCTTCCTATCAGAGGGGAGCC 60 Query 61 ATTGAGGCTGCGGAAGCACTCCTCAGGAACGAGATCAACGCACGGCTCGACATCACTAAC 120 ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| || Sbjct 61 ATTGAGGCTGCTGAAGCACTCCTCAGGAACGAGATCAACACGCGGCTCGACATCACCAAA 120 Query 121 CATTCCTTTTCATCTTTTACAATCGCAGACTTTGGTTGCTCCTCCGGCCCCAACACCGTA 180 ||||| || || ||||||||||||||||||||||| ||||||||||| ||||||||| | Sbjct 121 CATTCATTCTCGTCTTTTACAATCGCAGACTTTGGATGCTCCTCCGGACCCAACACCATT 180 Query 181 ATTGCTGTCGACATCATCATCCAAGCCCTCTACCACAAGTTCACCTCTTCTCTGCCTAAT 240 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTTGCTGTAGACATCATCATCCAAGCCCTCTACCACAAGTTCACCTCTTCTCTGCCTAAT 240 Query 241 ACTACAACTCCTCAGTTTCAAGTCTTCTTCAACGACGTCTCCCACACTGATTTCAATGCA 300 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 241 ACTACAACTCCTCAGTTTCAAGTCTTCTTCAACGACGTCCCCCACACTGATTTCAATGCA 300 Query 301 CTCTTTGCTTTGCTCCCTCCACAACGCCCCTACTTCGTTGCAGGTGTCCCCGGTTCCTTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 301 CTCTTTGCTTTGCTCCCTCCACAACGCCCCTACTTCGTTGCAGGTGTCCCCGGTACCTTT 360 Query 361 TATGGAAACTTGTTTCCAAAGGCACATCTCAACTTGGCCTACTCCTCTTGCGCCCTCTGC 420 ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 361 TATGGAAACTTGTTTCCCAAGGCACATCTCAACTTGGCCTTCTCCTCTTGCGCCCTCTGT 420 Query 421 TGGCTCTCCGACTTGCCATCCGAGCTAACTGATACAAGCTCTCCTGCTTACAACAGAGGC 480 |||||||| || |||||| ||||||||||||| | ||||||||||||||||||||||||| Sbjct 421 TGGCTCTCTGAGTTGCCACCCGAGCTAACTGACATAAGCTCTCCTGCTTACAACAGAGGC 480 Query 481 AGGATTCACTACACGGGAGCATCAGCAGAGGTTGCACAAGCTTACTCCTCTCAGTACAAG 540 |||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||||| Sbjct 481 AGGATTCACTACACGGAAGCATCAGCAGAGGTTGCACAAGCCTACTCTTATCAGTACAAG 540 Query 541 AAGGATATCAAGTTGTTTTTGCATGCTAGGTCACAGGAGCTCGCAGAAAACGGGTTGATG 600 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 541 AAGGATATCAAGCTGTTTTTGCATGCTAGGTCACAAGAGCTCGCAGAAAACGGGTTGATG 600 Query 601 GCACTGATTGTGCCCGGTGTACCAGATGGTTTTCTCGATTGTCAGGAGGCTTCAACGGGA 660 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 601 GCACTGATTGTGCCCGGTGTACCAGATGGTTTTCTTGATAGTCAGGAGGCTTCAACGGGA 660 Query 661 TCCGAGTTCGATCTGTTGGGTTCATGCCTCATGGACATGGCCA-A-AG--A-G-GG---- 710 ||||||||||||||||||||||||||||||||||||||||||| | || | | || Sbjct 661 TCCGAGTTCGATCTGTTGGGTTCATGCCTCATGGACATGGCCAGAGAGGTACGTGGTGGG 720 Query 711 AATAATAGAGGAGGAGGAGGTGAACAGTTTCAACCTTCCCATATATTACACAACTCCAAA 770 ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 721 AATAATAAAGGAGGCGGAGGTGGACAGTTTCAACCTTCCCATATATTACACAACTCCAA- 779 Query 771 GGAACTGGAAGACATCATCAGAAGCAACGGAGAGTTGAAAATTGATAAAATGGAGACACT 830 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 780 GGAACTGGAAGACATCATCAGAAGCAACGGAAAGTTGAGAATTGATAAAATGGAGACACT 839 Query 831 GGGGAGCATGGACGCACAAGACACTATGCCTGACCTCGAGTCAAGGGTTCTGTACCTGAG 890 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GGGGAGCATGGACGCGCAAGACACTATGCCTGACCTCGAGTCAAGGGTTCTGTACCTGAG 899 Query 891 AGCTGTGCTGGAAGGTCTAGTTCGTACCCACTTTGGCCACCAAATCCTCGACGACCTGTT 950 ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 900 AGCGGTGCTGGAAGGTCTCGTTCGCACCCACTTTGGCCACCAAATCCTCGACGACCTGTT 959 Query 951 TGATCGCTACGCCCTCAAACTTGCTCATTCCTCTTTCATCCTTCAGCCTCAAACCCACAA 1010 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 960 TGATCGCTACGCCCTCAAACTTGCTCATTCCTCTTTCATCCTCCAGCCTCGAACCCACAA 1019 Query 1011 ATCCATCATGATCTTTGCCCTTCTCAGTCGCTGTCATGACATCT 1054 ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1020 ATCCATCATGATCTTTGCCCTCCTCAGTCGCTGTCATGACATCT 1063 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39304727427 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5