BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15200.3
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471712 jgi|Araly1|471712|fgenesh2_kg.1__1666__AT1G15200.1 1349 0.0
> Ahg471712 jgi|Araly1|471712|fgenesh2_kg.1__1666__AT1G15200.1
Length=1440
Score = 1349 bits (730), Expect = 0.0
Identities = 794/826 (96%), Gaps = 0/826 (0%)
Strand=Plus/Plus
Query 124 CTTCTTCTAAGGGTTTCGAGCAAAATTTCTGAGCAACGGCGACGATGGGAGACACCGCCT 183
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTTCTTCTAAGGGTTTCGAGCGAAATTTCTGAGCAGCGGCGACGATGGGAGACACCGCCT 60
Query 184 TGGAGAAGACAGCGGAAGAGCTACGGCATGAGATCGATGAGCTTCACCGTCAACAGCGTG 243
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TAGAGAAGACAGCCGAAGAGCTACGGCATGAGATCGATGAGCTTCACCGTCAACAGCGCG 120
Query 244 AGATTACGGAGAGGCTTCGTGACCCTCGTGGACTCCGCCGTGGAGGCTTCTCAAACGTCG 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 AGATTACGGAGAGGCTTCGTGACCCTCGTGGACTCCGCCGTGGAGGCTTCTCAAGCGTCG 180
Query 304 CTCCTCGCAACCAAGGCCGTAGAGGCTTTCCTCGACCTGCGGAGAGGAATGACGTAGAAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TTCCTCGCAACCAAGGCCGTAGAGGCTTTCCTCGACCTGCGGAGAGGAATGACGCAGAAG 240
Query 364 ACGAGCCTCCTGCTAAAAGGAGATTGTCTTCCGCCGTTGTTAAGGTCGACGGTGAAGATG 423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGAGCCTCCTGCTAAACGGAGATTGTCTTCCGCCGTTGTTAAGGTCGACGGTGAAGATG 300
Query 424 TTAGTAAAGATGGAGAATTTCCAGTTGATGGTAATGGAACCCAGGTTAAAGTTGGTGAGA 483
||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 301 TTAGTAAGGATGGAGAATTGCCAGTTGATGGCAATGGAACCCAGGTTTTAGTTGGTGAGA 360
Query 484 ATGGGACTTCTGATCAAAGTGACAAGAAGCAATCTGGTCTTCATCGTGGAAGTTGGTCCC 543
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 361 ACGGGACTTCTGATCAAAGTGACAAGAAGCTATCTGGTCATCATCGTGGAAGTTGGTCCC 420
Query 544 AGAGAGATGCAGAACAACGACGGACCAATAAGCGTTACGAAGCTTTTGCATTGCCGGAGC 603
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 421 AGAGAGATGCAGAACAACGAGGGACCAAGAAGGGTTACGAAGCTTTTGCATTGCCGGAGC 480
Query 604 CTGCACCAAGGGTTTTACCTAAGAATGAGGATCCTAAACTGGTTAATAGGAACAGAAGAA 663
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTCACCAAGGGTTTTACCTAAGAATGAGGATCCTAAACTGGTTAATAGGAACAGAAGAA 540
Query 664 TGCTAGGGAATCTTCTAGGGACTTTGGAGAAGTTCAGAAAAGAAGATAAGCAGCGTTCTG 723
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCTGGGGAATCTTCTAGGAACTTTGGAGAAGTTCAGAAAAGAAGATAAGCAGCGTTCTG 600
Query 724 GAACAGATGCATACGCCCGACGAACTGCAGCTCTACAAAGGGCGGAGGAAAAGGCTCGTG 783
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 601 GAACAGATGCATACGCCCGACGGACTGCAACTCTACAAAGGGCTGAGGAAAAGGCTCGTG 660
Query 784 AAGAAAGTGAACGACTGAGGCTGCAGGAGCGTGAAAATTTGACTGAAAAGAGGAGAAGAG 843
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 661 AAGAAAGTGAACGACTGAGGTTGCAGGAGCGTGAAAATCTGACTGAAAAGAGGAGAAGAG 720
Query 844 ATCTTACTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTT 903
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 ATCTTACTCTTCGAGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAGTTGGAATTGCTTT 780
Query 904 TCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAG 949
||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 781 TCCTTCAGTGGAGTGAGCACCAAAAGAAACTTACCAATTTTATAAG 826
Score = 902 bits (488), Expect = 0.0
Identities = 586/630 (93%), Gaps = 19/630 (3%)
Strand=Plus/Plus
Query 1086 TAT-AGGACTAAAGCAGAGCCACGGATATACTATGCACCAGTGAAGCCTTTGGAAGAAGA 1144
||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 821 TATAAGGACTAAAGCAGAGCCACGGATATACTATGCACTAGTGAAACCTTTGGAAGAAGA 880
Query 1145 TACAAGTGAGGTAGAACAACAGAAAGAGCGGACATTCTTAGAATGGAAGGCAGCAAGGAG 1204
||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 881 TACAAGTGAGGTAGAGCAACAGAAAGAGCAGACATTCTTAGAATGGAAGGCGGCAAGGAG 940
Query 1205 ACAAGAAGTGAGTGAGTATCAAAAGGAGATAGAAGAGCAGTGTCTGGGTAATGTTGAGAA 1264
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 941 ACAAGAAGTGAGTGAGTATCAAAAGGAGATAGAAGAGCAGTGTCTGGGAAATGTTGAGAA 1000
Query 1265 AGAGCTGGAGAGGTGGCAAAACGCAAGGAAGGCAAGGAAAGCAAACAACGAGGGTATGAA 1324
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1001 AGAGCTGGAGAGGTGGCAAAACGCAAGGAAGGCGAGGAAAGCAAACAACGAGGGTATTAA 1060
Query 1325 TTTGCAGGAAACGATGGACAAGGAATTAGAGACTCATAGGATGGAGCATGGGCCAaagaa 1384
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1061 TTTGCAGGAAACAATGGACAAGGAATTAGAGACACATAGGATGGAGCACGGGCCAAAGAA 1120
Query 1385 gagaaagatacctggaggaggagtaggagatgaagatgaagaagatgaagtagaggatAT 1444
||||||||| || ||||||| | | | | | || | |||||||||||||| ||||||||
Sbjct 1121 GAGAAAGATTCCAGGAGGAG-A-T-G-A-A-GA-G--GAAGAAGATGAAGTGGAGGATAT 1171
Query 1445 CAATGGTGGAGAGGATGAAATGATAATGGATGATTTACTGGAGGAGGGAGGAGATGGAAC 1504
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1172 CAATGGTGGAGAGGATGAAATGATAATGGATGATTTGCTAGAGGAGGGAGGAGATGGAAA 1231
Query 1505 CATCAAGGAGGAAGTGGCAACTGATACAGTTAAAGCAGAAGCAGTGGAGGAAGATATTAA 1564
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1232 CATCAAGGAGGAAGTGGCTACTGATACAGTAAAAGCAGAAGCAGTGGAGGAAGACATTAA 1291
Query 1565 ACATGAGGTTCTCTAAGTCATATAGTTTGTTTGTTCTTGAAATTTGGTGGAGTT--T--G 1620
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1292 ACATGAGGTTGTCTAAGTCATATAGTTTGTTTGTTCTTGAAATGTGGTGGAGTTACTTTG 1351
Query 1621 CGAGTTAGAAAACTGGTCAAATCTATTTTGGAGC-GTTGTAACGTG-AATT--ATGGTAA 1676
|||||||||||||||||||||||||||||||||| || |||| ||| |||| |||||||
Sbjct 1352 CGAGTTAGAAAACTGGTCAAATCTATTTTGGAGCTGT-GTAAGGTGGAATTTTATGGTAA 1410
Query 1677 TTTCTAGGAAAGATTTGCCTTTGTGCTATA 1706
||| |||||||||||||||||| |||||||
Sbjct 1411 TTTGTAGGAAAGATTTGCCTTTCTGCTATA 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5