BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15410.1
Length=2306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471741 jgi|Araly1|471741|fgenesh2_kg.1__1695__AT1G15410.1 3149 0.0
> Ahg471741 jgi|Araly1|471741|fgenesh2_kg.1__1695__AT1G15410.1
Length=2248
Score = 3149 bits (1705), Expect = 0.0
Identities = 2120/2308 (92%), Gaps = 77/2308 (3%)
Strand=Plus/Plus
Query 2 GATCCCACATTTCAGGTAAAAACATCGTCTGGGCTCTTTGCCATTTTAGCGAATGTGGAA 61
|||||| |||||||||||||||| ||||||||| || || ||||||| |||||||||||
Sbjct 1 GATCCCTCATTTCAGGTAAAAACGTCGTCTGGGTTC-TTCCCATTTTCCCGAATGTGGAA 59
Query 62 AG--TGGGAGGAGCTCTTCTCAGACCTT-AAGACTATTGCTTTAGTGGAATGCTTCTCGT 118
|| ||||||||||||||||||||||| ||| ||||| ||||| || || |||||| ||
Sbjct 60 AGAAAGGGAGGAGCTCTTCTCAGACCTTGAAGCCTATTCCTTTATTGAAACGCTTCTTGT 119
Query 119 AAATGTATAAGTGAG-GAAAGAAACTCCATTCGTATCTATCTACTACCCTAAGCCGTTTA 177
| |||||||||||| |||||||||||||||||||||||||| | |||||| |||||
Sbjct 120 AGTTGTATAAGTGAGACAAAGAAACTCCATTCGTATCTATCTA-T--TCTAAGCTGTTTA 176
Query 178 TGCATTTTCTGTCCATCAGAAGATCAACACCTGTTTCTGGAGGATTCCATTGATTTAAGG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 177 TGCATTTTCTGTCCATCAGAAGATCAACACCTGTTTCTGGAGGATTCCATTGA-TTGAGG 235
Query 238 GATTAGATGGATGATGGACCATGTGGGATTCAGTAGATGACAAGAACACAAAGGAATCCA 297
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 236 GATTAGATGGGTGATGGACCATGTGGGATTCAGTAGAGGACAAGAACACAAAGGAATCCA 295
Query 298 CCTAACAGAGACAACCCACATGTTGCAGG-AAATACATATAATAATATCACAAGAAACGG 356
|| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 296 CCAAACAGAGACAACCCACATGTTGCAGGAAAATATATATAA-AATATCACAAGAAACGG 354
Query 357 AAAAAGAAGCAGACAGAGACACCTCTTCTTGAATTTAACGCCTTACATTGTGGTATCTTC 416
|||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 355 AAAAAGAACCAGACAGGGACTCATCTTCTTGAATTTAACGCCTTACATTGTGGTATCTTC 414
Query 417 CATCTTCTTTACTGCCTCATGGTGAAATCCAGTGCATATATGATTATTTATCTGAGGCGA 476
|||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 415 CATCTTCTTTACTGCCTCTTGGTGAAATCCAGTGAAAATATGATTATTTATCTGAGGCGA 474
Query 477 AGATTCCTTACTTCATCTTGATGCGACTACTACTGGTCCAACTTTCATTGGATCGGTTGA 536
||||||| |||||| | | | |||| ||||||||||| ||||||| |||||||||||
Sbjct 475 CGATTCCTCACTTCAAC-T--T--GACTCCTACTGGTCCAGCTTTCATAGGATCGGTTGA 529
Query 537 TTTGAGGCCGTTGTTCTTACATTTTGGTGTCCCACCTGTTCTTTTAGTACTGTTTTCCTT 596
||| ||||||||| || | |||||||||||||||||||||||||||| |||||||
Sbjct 530 TTTCAGGCCGTTG---TT-C----TGGTGTCCCACCTGTTCTTTTAGTACTG-TTTCCTT 580
Query 597 TTTGTTTCTGGCAATCAGAAAACATAAAGGCAATCAGTCATCCTTCTCAATAACATACAA 656
|||| | | | | | |||||||||||||||| ||||||||| |||||
Sbjct 581 TTTG--T-T-----T-------C-T---GGCAATCAGTCATCCTGCTCAATAACTTACAA 621
Query 657 AGATTTGGTTTTCAAGAGAATCTTCTATAGAAAGCTAGACGTTTACTTCTGTCTTATTAA 716
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 622 AGATTTTGTTTTCAAGAGAATCTTCTATAGTAAGCTAGACGTTTACTTCTGTCTTATTAA 681
Query 717 GGAGAAGTACTGGTTCTTTCATTTATATCTTGGCTGGTTTGGGAATTGCATCCAAATTTC 776
||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 682 GGAGAAGTACTGG--------------T-TTGGCTGGTTTGGGAATTGCATCCAAATTTC 726
Query 777 TTGCA--GTGGGTGTCAGCCTGGAGCTGCAGAAAAGTGAGTTGATGTTAGAGATTGTAGG 834
||||| |||||| ||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 727 TTGCAGTGTGGGTTTCACCCAGGAGCTGCAGAAAAGTGAGTTCATGTTAGAGATTGTAGG 786
Query 835 ATCTTACTCCAAAAAGCCAGAAAAGGTCCTTGCGACTCTCTAACTTGA-AAGTTGTTTCC 893
|||||||||| |||||| ||||||||||||||||||| | |||||| | |||||| ||||
Sbjct 787 ATCTTACTCCTAAAAGCTAGAAAAGGTCCTTGCGACTTTATAACTT-AGAAGTTGCTTCC 845
Query 894 tttttttGAATCTGAGCTGGTTTTGGAATTTTGGTGTCAAGATTTGGAATTTGAA-TCTG 952
||||| ||||||| |||||| ||||||| ||||||||||||||||||| |||||| ||||
Sbjct 846 TTTTTCTGAATCTCAGCTGGATTTGGAACTTTGGTGTCAAGATTTGGAGTTTGAACTCTG 905
Query 953 TAGTAAGATTCAGGTTTAGTGGGGGAGGGAACAAGTTGGAAGCTTTTGCTAGTTTTGTCA 1012
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 906 AAGTAAGATTCAGG-TTAGTGGGGGAGGGAACAAGTTGGAAACTTTTGCTAGTTTTGTCA 964
Query 1013 AAGGTGTCACTAAAGTACTAACTATCAGAAAACATTTTCA-GCCAGAAGCTTGGTGATGT 1071
|||||||| || ||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 965 AAGGTGTCTCTGAAGTACTAACTATCAGAAAGCATTTTCAGGACAGAAGCTTGGTGATGT 1024
Query 1072 ATCTTCAGATTTTCAACAACCCATCTCATGGCTTAGCTCATTTATGCTACTCTAGTCGGG 1131
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1025 ATCTTCAGATTTTCAACAACCCATCTCATGGCTTAGCTCATGTAAGCTACTCTAGTCGGG 1084
Query 1132 TTTCGTGTAGGGTAAGACTGAGTCGTGTCCTTGCCATGCCACCGTCTTCAGTCCTCTTGC 1191
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1085 TTTCGTGTAAGGTAAGACTGAGTCGTGTCCTTGCCATGCCACCGTCTTCAATCCTCTTGC 1144
Query 1192 ATATGGACGAAAGCAATGATCTTCCCAAGCCCAAGAAGGGTTTTTGTCTGAGTGAAGATT 1251
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1145 ATATGGACGAAAGCAATGATCTTCCCAAGCCCAAGAAGGGTTTTTGTCTAAGTGAAGATT 1204
Query 1252 CGAGAAACAGTTTAAACAGTCTTCCTGCAGATTCTTTGCTTAGGCAGGCCAACACAGTGG 1311
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1205 CGAGAAACAGTTTAAACAGTCTTTCTGCAGATTCTTTGCTTAGGCAGGCTAACACAGTGG 1264
Query 1312 GGATTATCGGAGGCGTTTCAACTGATTCCACTCTGAAATTTGTGAAGAAACTCGTGGATT 1371
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GGATAATTGGAGGCGTTTCAACTGATTCCACTCTGAAATTTGTGAAGAAACTCGTGGATT 1324
Query 1372 GGAGCTCAAATGATGGTAAAAGCTCGTTACCTTTTGTGCTTTGCTCGGATCCTGCTCTCA 1431
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1325 GGAGCTCAAAAGATGGTAAAAGCTCGTTACCCTTTGTGCTTTGCTCGGATCCTGCACTCA 1384
Query 1432 ACAAGGAGCTTCTCTTATACGAGGAAAACTCGTATCCTTCTCTTTACCATAGAGAAGAGA 1491
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1385 ACAAGGAGCTTTTCTTATACGAGGAAAACTCGTATCCTTCTCTTTACCATAGAGCAGAGA 1444
Query 1492 GTACTCCGGTTGATCCAAAGCTAATTGTGGAAAATCTAAGGAATAAGAGGAGATATCTTG 1551
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1445 GTACTCCGGTGGATCCAAAGCTAATTGTGGGGAATCTAAGGAATAAGAGGAGATATCTTG 1504
Query 1552 AGAGGTGTGGAGCTAAATTAATCTTAATGCCCTGTCATATTGCACATATATGGTATGAAG 1611
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AGAAATGTGGAGCTAAATTAATCTTAATGCCCTGTCATATTGCACATATATGGTATGAAG 1564
Query 1612 AGGTATGTGAAGGGAGTTTAGTTCCTCTGCTTCACATGGGTGAATGCATTGCTAAAGAAC 1671
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1565 AGGTTTGTGAAGGGAGTTCAGTTCCTCTGCTTCACATGGGTGAATGCATTGCTAAAGAGC 1624
Query 1672 TGCAAGAGGCAAAAATGAAGCCCCTTGAAGCTGGGAATCCTCTGCGTGTAGGTGTGATGG 1731
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1625 TGCAAGAGGCAAAAATGAAGCCCCTTGAAGCTGGGAATCCTCTGCGTGTGGGTGTGATGG 1684
Query 1732 CCACTAGCGCCACGTTATCAGCAGGGTTCTACCAGGAGAAACTCCAAAGCAATGGATTTG 1791
||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1685 CCACTAGTGCCACGCTATCTGCAGGGTTCTACCAGGAGAAACTTCAAAGCAATGGATTTG 1744
Query 1792 AGGCTGTGCTTCCAGACAAGGCAACAATGGAGCACACGGTGATCCCATCCATAGAAGCAA 1851
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1745 AGGCAGTGCTTCCAGACAAGGCGACAATGGAGCACACGGTAATCCCATCCATAGAAGCAA 1804
Query 1852 TGAAGAGAAAAGACATGGAAGGAGCACGGAACCTTCTGAGGATAGCGTTGCAGGTACTGC 1911
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1805 TGAAGAGAGAAGACATGGAAGGAGCACGGAACCTTCTGAGGATAGCGTTGCAGGTATTGC 1864
Query 1912 TAGTGCAGGCGGTAAACGTGGTGATGCTCGGGTCAGATGAGATGCGGGACCTCTTGCCTG 1971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1865 TAGTGCAGGCGGTAAACGTGGTGATGCTCGGGTCAGATGAGATGCGGGACCTCTTGCCAG 1924
Query 1972 GGGATGATCCTCTGCTAAAGAAGTGTGTTGATCCAATGGATGCACTAGCAAGGTCTGCCA 2031
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1925 GGGATGAGCCTCTGCTAAAGAAGTGTGTTGATCCAATGGATGCACTCGCAAGGTCTGCCA 1984
Query 2032 TCAAATGGGCAGAGAAT-AGATGCTCTTAAGGGAGTTTGTGTGT--GTGTATAT-T-TGT 2086
||||||||||||||||| | |||||||||||||||||||||||| |||| ||| | |||
Sbjct 1985 TCAAATGGGCAGAGAATCA-ATGCTCTTAAGGGAGTTTGTGTGTATGTGTGTATATATGT 2043
Query 2087 GAATAGAAATATAGCTCGGCTGGGATGAAATTATCAA-GTGTAAACCAGTGTTTGATAGA 2145
|||||||||||||||||||||||| |||||||| ||| ||||||||| | ||||||||||
Sbjct 2044 GAATAGAAATATAGCTCGGCTGGGGTGAAATTACCAAAGTGTAAACCGGCGTTTGATAGA 2103
Query 2146 AAACTCAAAACCAAAGTCTCAACATGTATTGGTCAAAACAAGTGTGAACATCTCCAAAGC 2205
||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 2104 AAAATCAAAACCAAAGTCTCAACATGTGTTGGTCAACACAAGTGTGAACATGTCTAAAGC 2163
Query 2206 CAAAAAA-GTCTGAACATGTGTTGGCTTGGATGCAATGTGTAATATCCCTTATTATTAAT 2264
|||||| || |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2164 AAAAAAAAGTTTGAACATGAGTTGGCTTGGATGCAATGTGTAATATCCCTTATTGTTA-- 2221
Query 2265 ACAGACAATTATTAGTGGAATAAAAAGA 2292
|||||| ||||||||||||||||||||
Sbjct 2222 -CAGACATTTATTAGTGGAATAAAAAGA 2248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86845758600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5