BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15470.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg471748 jgi|Araly1|471748|fgenesh2_kg.1__1702__AT1G15470.1 2122 0.0 > Ahg471748 jgi|Araly1|471748|fgenesh2_kg.1__1702__AT1G15470.1 Length=1404 Score = 2122 bits (1149), Expect = 0.0 Identities = 1323/1402 (94%), Gaps = 31/1402 (2%) Strand=Plus/Plus Query 4 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAGATAACAAACCAAACTa 63 |||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAG-------A--AAA--G 49 Query 64 aaaaaaaaaaGTTTCTCCTTTTATCATTCCTTCTCTTCCCTTGT-ATAGGTGTGATCCTC 122 |||||||||||| ||||||||||||||||| ||| ||| ||| | ||||||||||||||| Sbjct 50 AAAAAAAAAAGTGTCTCCTTTTATCATTCCCTCTTTTCTCTT-TAATAGGTGTGATCCTC 108 Query 123 TTCAAGGGGATTTCTCTGGCGGGTCATACATTCGCACCGATCAAAGTCGGATTGGTCTTT 182 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 109 TTCAAGGGGATTTCTCTGGCTGGTCATACATTCGCACCGATCAAACTCGGATTGGTCTTT 168 Query 183 CTTAACGCAATCTTGACCCGATTCAAAAA--ATTTCTGGGTTTGTTAGTGAATAGATAAG 240 |||||||||||| || | ||||||||||| | ||||||||||||||||||||||| || Sbjct 169 CTTAACGCAATCCTGTCGCGATTCAAAAACGA-TTCTGGGTTTGTTAGTGAATAGACGAG 227 Query 241 AAGATAA-ATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 299 || | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 AAAAAAAGATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 287 Query 300 CTTATAGTCCGGTGACTCCAGATGGGTTCTTTCTCATTAGCGCCAGCAAAGATTCGAATC 359 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 288 CTTATAGTCCGGTGACTCCAGATGGGTTCTTCCTCATTAGCGCCAGCAAAGATTCGAATC 347 Query 360 CGATGTTGAGGAATGGAGAGACTGGTGACTGGATTGGGACTTTTGAAGGACATAAGGGAG 419 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 348 CGATGTTGAGGAATGGGGAGACTGGTGACTGGATTGGAACTTTTGAAGGACATAAGGGAG 407 Query 420 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCTGATT 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 408 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCAGATT 467 Query 480 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 527 Query 540 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGTTTACTCACTGGTGGAATGG 599 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 528 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGCTTACTCACTGGTGGAATGG 587 Query 600 AGAAAATACTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGGA 659 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 588 AGAAAATTCTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGAA 647 Query 660 ATTCCCCTGGTTCAATTAGAACTGTCGAATGGCTTCATAGTGATAATACAATCTTAAGCT 719 ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 648 ATTCCGCTGGTTCAATTAGAACCGTTGAATGGCTTCATAGTGATAATACAATCTTAAGCT 707 Query 720 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 767 Query 780 CATTAGAAACAAAGTCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 839 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 CATTAGAAACAAAATCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 827 Query 840 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 887 Query 900 GCTATGACATGCCTTGCAATGTTGAATCGGCATCGTTGGAACCGAAACACGGTAACACTT 959 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 888 GCTATGACATGCCTTGCAATGTTGAATCGGCATCTTTGGAACCGAAACACGGCAACACTT 947 Query 960 TCATTGCTGGAGGAGAAGATATGTGGGTGCACAGGTTTGATTTCCAGACTGGAGAAGAGA 1019 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 948 TCATTGCTGGAGGAGAAGATATGTGGGTGCATAGGTTTGATTTCCAGACTGGAGAGGAGA 1007 Query 1020 TTGGGTGTAACAAGGGTCATCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1079 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1008 TTGGGTGTAACAAGGGTCACCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1067 Query 1080 AGTCATACACCTCAGGCTCAGAAGACGGAACGGTCAGAATATGGGTGGTGGGTTCGGTAA 1139 | |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 1068 AATCATACACATCAGGCTCAGAAGACGGAACAGTCAGAATATGGGTGGTGGGTTCAGTGA 1127 Query 1140 ACCATC-CTGAGGAGAGCAATCTAAGCGGCCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1198 |||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1128 ACCATCAC-GAGGAGAGCAATCCGAGCGGTCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1186 Query 1199 CGTAAAGCTGAAAGTCTCCGTATCAGTGAGAAAGCCGCAGAAGCTAAATGAAACACCATC 1258 |||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| |||| Sbjct 1187 CGTAAAGCGGAAAGTCTGCGTATCAATGAGAAAGCTGCAGAAGCTAAATGAAACATCATC 1246 Query 1259 GTTAGCTTATGATATCACATAGATTCATAGTT-GTTTTT--GCATCATTATAAGATGTGA 1315 ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1247 GTTAGCTTATGATATGGCATAGATTCATAGTTTGTTTTTTTGCATCATTATAAGATGTGA 1306 Query 1316 CAAAGGGGTTTTGCCTTTTAAAAGTCTCTCA-GACCGAATAAAACGAA-ATAA-T----- 1367 || |||| ||||||||||||||||||||||| ||| |||||||||||| |||| | Sbjct 1307 CAGAGGG-TTTTGCCTTTTAAAAGTCTCTCAAGACGGAATAAAACGAACATAAATAATAT 1365 Query 1368 CTTCAACTATACTTGAGTGAAT 1389 ||||||||||| |||||||||| Sbjct 1366 CTTCAACTATATTTGAGTGAAT 1387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5