BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15530.1 Length=1971 Score E Sequences producing significant alignments: (Bits) Value Ahg920458 jgi|Araly1|920458|scaffold_101739.1 3040 0.0 > Ahg920458 jgi|Araly1|920458|scaffold_101739.1 Length=1996 Score = 3040 bits (1646), Expect = 0.0 Identities = 1855/1956 (95%), Gaps = 14/1956 (1%) Strand=Plus/Plus Query 23 GGCAGTGGCCATCCCCTCTCCTCCTTATCCTCATC---G-TTCTTCATCTCGTCTCTTCC 78 |||| |||||||||||||||||||||||||||||| | | |||| |||| || ||||| Sbjct 28 GGCACTGGCCATCCCCTCTCCTCCTTATCCTCATCTTTGCTGCTTC-TCTCCTCCCTTCC 86 Query 79 TCTTCCGCCATTGATTTTCTCTACAATTCCTTCAGCTCCGTAACTAACAGAACCGACGTA 138 |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| Sbjct 87 TCTTCCGCCATTGATTTTCTCTACAATTCCTTCAGCTCTGCAACCAACAGAACCGACGTA 146 Query 139 ATCCTCATCGAAGATTCCCGCGTAGAATCCACCGTAATCAGCCTCATCAACGACTCCGAT 198 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 147 ATCCTCATCGAAGATTCCCGCGTAGACTCCACCGTGATCAGCCTCATCAACGAGTCCGAT 206 Query 199 CCACTCTCTTTCGGCCGTGTTTTTTACCCACAAAAACTCACAATTATACCCGATCCAACC 258 || ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| Sbjct 207 CCTTTCTCTTTCGGCCGTGTTTTTTACCCGCAAAAGCTCTCAATTATACCCGATCCAACA 266 Query 259 CGAAACCCGACCCGACTCTCATCTTTCTCAACTTCCTTCGTCTTCTCCATTCTCCCTGAC 318 |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 267 CGAAACCCGACCCGACTCTCTTCTTTCTCAACTTCTTTCGTCTTCTCCATCCTCCCTGAC 326 Query 319 ATATCCACAAGTCCTGGCTTCGGCCTCTGCTTCGTCCTCTCCAATTCCACCTCTCCTCCA 378 |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 327 ATATCCACAAGTCCCGGCTTTGGCCTCTGCTTCGTCCTCTCCAATTACACCTCTCCTCCA 386 Query 379 AATGCTATCTCCAGCCAATACTTCGGTCTCTTCACTAACGCCACAGTCAGATTCAACGCT 438 || |||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 387 AACGCTATCTCAAGCCAATACTTCGGTCTCTTCACTAATGCCACCGTCCGATTCAACGCT 446 Query 439 CCTCTCCTCGCCGTCGAATTCGACACCGGTAGAAACTCTGAAGTAAACGATATCGACGAT 498 |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| Sbjct 447 CCTCTCCTCGCCGTCGAATTCGACACCGGTCGAAACTCTGAAGTCAACGACATCGACGAT 506 Query 499 AACCACGTCGGAATTGATCTTAACAACATTGAATCCACCACATCCGTAACCGCTGGCTAC 558 |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 507 AACCACATCGGAATTGACCTTAACAACATCGAATCCACCACATCCGTAACCGCTGGCTAC 566 Query 559 TACGATTCTGTTAATGGAAGCTTCGTTCGCTTTAATATGCGTAACGGAAACAACGTTCGA 618 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 567 TACGATTCTGTTAATGGAAGCTTCGTTCGCTTCAATATGCGTAACGGAAACAACGTTCGA 626 Query 619 GCTTGGATCGATTTCGATGGCCCTAACTTTCAGATCAACGTTTCCGTCGCTCCCGTCGGT 678 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 627 GCTTGGATCGATTTCGATGGCCCTAACTTCCAGATCAACGTTTCCGTCGCTCCCGTCGGT 686 Query 679 GTGCTTCGACCTCGCCGGCCAACTCTTACTTTCCGTGATCCTGTTATTGCTAATTATGTC 738 ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct 687 GTGCTTCGACCTCGCCGGCCAACGCTTACTTTCCGTGATCCGGTTATCGCTAATTATGTC 746 Query 739 TCGGCAGATATGTATGCT-GGCTTCTCTGCTTCCAAAACCAATTGGAATGAAGCTCGAAG 797 |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 747 TCGGCAGATATGTATG-TCGGCTTCTCTGCTTCCAAAACCAATTGGAATGAAGCGCGAAG 805 Query 798 GATTCTAGCTTGGAGCTTGAGTGATACAGGAGCTCTTCGAGAGATCAACACTACGAATTT 857 ||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||| Sbjct 806 GATTCTAGCTTGGAGCTTGAGTGATACTGGAACTCTTCGAGAGATCAACACAACCAATTT 865 Query 858 ACCTGTTTTCTTCCTGGAAAACTCTTCTTCTTCTCTTTCCACTGGAGCAATCGCTGGGAT 917 ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| Sbjct 866 ACCTGTTTTCTTCCTGGAAAATTCTTCGTCTTCTCTTTCAACTGGAGCAATCGCCGGGAT 925 Query 918 CGTTATCGGTTGTGTTGTCTTCGTAGCTCTAATCGGATTTGGGGGTTATTTGATTTGGAA 977 |||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct 926 CGTTATCGGTTGTGTTGTCTTCGTAGGTCTACTTGGATTTGGGGGTTATTTGATTTGGAG 985 Query 978 GAAACTAATGAGAGAGGAAGAAGAAGAAGAGATCGAGGAGTGGGAGTTAGAGTTTTGGCC 1037 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 986 GAAACTAATGAGAGAGGAAGAAGAAGAAGAGATCGAGGAGTGGGAGTTAGAGTTTTGGCC 1045 Query 1038 TCACCGTTTCAGCTACGAAGAACTCGCTGCAGCTACGGAGGTTTTCTCTAACGATCGTCT 1097 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1046 TCACCGTTTCAGCTACGAAGAACTCGCTGCAGCTACGGAGGGTTTCTCTAACGATCGTCT 1105 Query 1098 GCTTGGATCTGGAGGATTTGGTAAAGTTTACAGAGGAATTTTGTCAAACAACAGTGAGAT 1157 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 TCTTGGATCTGGAGGATTTGGTAAAGTTTACAGAGGAATTTTGTCAAACAACAGTGAGAT 1165 Query 1158 TGCTGTTAAATGCGTGAATCACGATTCGAAGCAAGGTTTGAGAGAATTTATGGCGGAGAT 1217 ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 1166 AGCTGTTAAATGCGTGAACCATGATTCGAAGCAAGGTTTGAGAGAATTCATGGCGGAGAT 1225 Query 1218 CTCGAGTATGGGTAGGTTACAGCATAAGAATCTAGTTCAAATGAGAGGATGGTGTCGCCG 1277 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1226 CTCGAGTATGGGTCGGTTACAGCATAAGAATCTAGTTCAAATGAGAGGATGGTGTCGCCG 1285 Query 1278 GAAAAACGAGCTGATGCTTGTCTACGATTACATGCCAAACGGAAGTCTTAATCAGTGGAT 1337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1286 GAAAAACGAGCTGATGCTTGTCTACGATTACATGCCAAACGGAAGTCTTAATCAGTGGAT 1345 Query 1338 CTTTGATAATCCTAAAGAGCCAATGCCGTGGAGGAGAAGGCGTCAGGTGATTAACGATGT 1397 |||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| Sbjct 1346 TTTTGATAACCCTAAAGAGCCAATGCCGTGGCGGAGGAGGCGTCAGGTGATTAGCGATGT 1405 Query 1398 TGCGGAAGGGCTTAATTATCTCCACCATGGATGGGATCAAGTGGTGATTCATAGAGATAT 1457 ||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 1406 TGCGGAAGGGCTTAACTATCTACACCATGGATGGGACCAAGTGGTGATTCACAGAGATAT 1465 Query 1458 CAAATCAAGTAACATTCTTTTGGATTCTGAGATGCGTGGGAGGCTTGGGGACTTCGGTTT 1517 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1466 CAAATCAAGTAACATTCTTTTGGATTCTGAGATGCGTGGGAGACTTGGGGACTTTGGTTT 1525 Query 1518 AGCTAAGTTATATGAGCACGGTGGGGCTCCAAACACGACTCGCGTGGTGGGCACGTTAGG 1577 ||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1526 AGCCAAGCTGTATGAGCACGGTGGGGCTCCAAACACGACACGCGTGGTGGGCACGTTAGG 1585 Query 1578 GTATTTGGCTCCGGAGCTTGCGTCTGCTTCGGCGCCTACGGAGGCGAGTGATGTGTATAG 1637 ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1586 GTATTTGGCACCGGAGCTTGCGTTTGCGTCGGCGCCTACGGAGGCGAGTGATGTGTATAG 1645 Query 1638 TTTTGGTGTGGTGGTGTTGGAGGTTGTTAGTGGGAGGAGACCGATAGAGTACGCGGAGGA 1697 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 1646 TTTTGGTGTGGTGGTGTTGGAGGTTGTTTGTGGGAGGAGGCCGATAGAGTACGCGGAGGA 1705 Query 1698 GGAAGATATGGTGCTTGTGGATTGGGTTAGGGATTTGTACGGTGGAGGAAGAGTGGTTGA 1757 |||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 1706 GGAAGATATGGTACTTGTGGATTGGGTTAGGGATTTGTACGGCGGAGGAAGAGCGGTTGA 1765 Query 1758 TGCAGCGGACGAGAGAGTAAGGAGCGAGTGTGAGACGATGGAGGAAGTTGAATTGTTACT 1817 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1766 TGCGGCGGACGAGAGAGTGAGGAGCGAGTGTGAGACGATGGAGGAAGTTGAATTGTTACT 1825 Query 1818 CAAGTTAGGTCTGGCTTGTTGTCACCCTGATCCAGCTAAGCGGCCGAATATGAGAGAGAT 1877 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1826 GAAGTTAGGTCTGGCTTGTTGTCACCCTGATCCAGCTAAGCGGCCGAATATGAGAGAGAT 1885 Query 1878 CGTTTCACTACT-GCTTGGCTCACCACAAGAGGATTTGTTGACTGGG-CTCACGCCGGCC 1935 ||| ||||| || |||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1886 CGTCTCACT-CTTGCTTGGCTCACCACAAGAGGATTTGTTGAC-GGGACTCACGCCGGCA 1943 Query 1936 GCCGCCGCGGCAGACTCCACGGCTGCTCACGCATGA 1971 |||||||| |||||| |||||||||||||||||| Sbjct 1944 GCCGCCGC---AGACTCTACGGCTGCTCACGCATGA 1976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74085526525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5