BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15550.1 Length=1256 Score E Sequences producing significant alignments: (Bits) Value Ahg471756 jgi|Araly1|471756|fgenesh2_kg.1__1710__AT1G15550.1 1857 0.0 > Ahg471756 jgi|Araly1|471756|fgenesh2_kg.1__1710__AT1G15550.1 Length=1240 Score = 1857 bits (1005), Expect = 0.0 Identities = 1169/1247 (94%), Gaps = 15/1247 (1%) Strand=Plus/Plus Query 1 ATCACCAAACACCACACTTCTCATAAGaaaaaaaacacaaacatctatcaaatttacaaa 60 ||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 1 ATCACCAAACATCACACTTCTCATAAG-AAAAATACACAAACATCTATCAGATTTATAAA 59 Query 61 gttttaaaactaattaaaaaaGAGCAAGATGCCTGCTATGTTAACAGATGTGTTTAGAGG 120 |||| ||| || || | |||||||||||||| ||||||||||||||||||||||| Sbjct 60 -TTTTTAAA--AA--CAAGATCAGCAAGATGCCTGCAATGTTAACAGATGTGTTTAGAGG 114 Query 121 CCATCCCATTCACCTCCCACACTCTCA-CATACCTGACTTCACATCTCTCCGGGAGCTCC 179 |||||||||||||||||||||||||| || |||||||||||| || || || ||||||| Sbjct 115 GCATCCCATTCACCTCCCACACTCTCACCA-ACCTGACTTCACTTCCCTTCGTGAGCTCC 173 Query 180 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCTCCGCTGCTCCTTCTCCTC 239 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 174 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCGCCGCTGCTCCTTCTCCTC 233 Query 240 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTCGACCACCCGGACGCGACTAACCAAA 299 |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| Sbjct 234 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTGGACCACCCGGACGCGGCCAACCAAA 293 Query 300 TCGGTCATGCATGTAGAACTTGGGGTGCCTTCCAAATCTCAAACCACGGCGTGCCTTTGG 359 |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 294 TCGGCCATGCATGTAGAACTTGGGGTGCCTTCCAGATCGCAAACCACGGCGTGCCTTTGG 353 Query 360 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGTCTCTTCGGGCTACCTGTCCAACGCA 419 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 354 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGCCTCTTCGGGCTACCTGTCCAACGCA 413 Query 420 AGCTTAAGTCTGCTCGGTCGGAGACAGGTGTGTCCGGCTACGGCGTCGCTCGTATCGCAT 479 |||||||| | |||||||||||||||||||| ||||| || ||||||||||||||||| | Sbjct 414 AGCTTAAGGCGGCTCGGTCGGAGACAGGTGTCTCCGGTTATGGCGTCGCTCGTATCGCGT 473 Query 480 CTTTCTTCAATAAGCAAATGTGGTCCGAAGGTTTCACCATCACTGGCTCGCCTCTCAACG 539 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 474 CTTTCTTCAATAAGAAAATGTGGTCCGAAGGTTTCACCATCACTGGTTCCCCTCTCAACG 533 Query 540 ATTTCCGTAAACTTTGGCCCCAACATCACCTCAACTACTGCGATATCGTTGAAGAGTACG 599 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 534 ATTTCCGTAAACTTTGGCCCCAACTTCACCTCAACTACTGCGACATCGTTGAAGAGTACG 593 Query 600 AGGAACATATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAATTCACTTGGGG 659 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 594 AGGAACAAATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAAATCACTTGGGG 653 Query 660 TCAGCGAAGAAGACATTGAATGGGCCAGTCTCAGTTCAGATTTAAACTGGGCCCAAGCTG 719 |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 654 TCAGCGAAGAGGACGTTGAATGGGCCAGTCTCAATTCAGATTTAAATTGGGCCCAAGCTG 713 Query 720 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCCATGGGTCTAGCAG 779 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 714 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCTATGGGTCTAGCAG 773 Query 780 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGTCTACAAG 839 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 774 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGCCTACAAG 833 Query 840 TATTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGTTTCCTGGCTCGCTCGTGGTTA 899 | |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | Sbjct 834 TGTTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGGTTCCTGGCTCGCTAGTGGTCA 893 Query 900 ACGTTGGTGACCTCTTCCACATCCTATCCAATGGATTGTTTAAAAGCGTGTTGCACCGCG 959 ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| Sbjct 894 ACGTTGGTGACCTCTTCCACATCTTATCCAACGGATTGTTTAAAAGCGTGCTGCACCGCG 953 Query 960 CTCGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCGCAATCTG 1019 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 954 CTAGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCACAATCTG 1013 Query 1020 ATATCAAGATATCACCTGTACCGAAGCTGGTTAGTCCCGTTGAATCGCCTCTATACCAAT 1079 |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1014 ATATCAAGATATCACCCGTACCGAAGCTGGTTAGTCCGGTTGAATTGCCTCTATACCAAT 1073 Query 1080 CGGTGACATGGAAAGAGTATCTTCGAACAAAAGCAACTCACTTCAACAAAGCTCTTTCAA 1139 |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1074 CGGTCACATGGACAGAGTATCTTCGAACAAAAGCAACTCACTTCAATAAAGCTCTTTCAA 1133 Query 1140 TGATTAGAAATCACAGAGAAGAATGATTA-----GA--TAATAATAGTTGTGATCTACTA 1192 ||||||||||||||||||| ||||||||| || |||||||| |||||||| ||| Sbjct 1134 TGATTAGAAATCACAGAGAGGAATGATTAATCATGAGATAATAATATTTGTGATCCGCTA 1193 Query 1193 GTTAGTTTGATTAATAAATTGTTGTAAATGATTTCAGCAATATGATT 1239 ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1194 GTTAGTTTGATTAATAAATTGTTGTTAATTATTTCAGCAATATGATT 1240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46929310827 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5