BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15800.1 Length=1067 Score E Sequences producing significant alignments: (Bits) Value Ahg312568 jgi|Araly1|312568|fgenesh1_pm.C_scaffold_1001348 507 9e-143 > Ahg312568 jgi|Araly1|312568|fgenesh1_pm.C_scaffold_1001348 Length=927 Score = 507 bits (274), Expect = 9e-143 Identities = 324/346 (94%), Gaps = 11/346 (3%) Strand=Plus/Plus Query 101 ATGACCGGCGGAGACTGGATTCACGAGGCTATGGGTGATGATTCATTAGTGGCGGAGGCT 160 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGACCGGCGGAGACTGGATTCACGAGGCTATGGGTGATGATTCATTGGTGGCGGAGGCT 60 Query 161 CTGATCTGTCTCCTCCATGCCGAGCCGTCACTTCCTGAGACGAAGAGCGGCGGCGCGTCG 220 |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 61 CTGATCTGTCTCCTCCATGCTGAACCGTCACCTCCTGAGACGAAGAGCGGCGGCGCGTCG 120 Query 221 GATCTCAAGCTGAAGTGGAGCGTGCGTCAGCCGAGGACCAAGGCGGCGAC-GTTAAGGAA 279 ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| Sbjct 121 GATCTCAAGCTGAAGTGGAGCGTGCGTCAGCGGAGGACCAAGGCGGC-ACCGTTAAGGAA 179 Query 280 GAAGGGAGATCATGATACGCGTGCTAGTCCCACGACCCCACTTTCATGGAGCGGCGCAAC 339 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 180 GAAGGGAGATCATGATACGCGTGCTAGTCCCACGACGCCTCTTTCCTGGAGCGGCGCAAC 239 Query 340 CTCTTTTAGCGGCGGTGGAGGCGG---T-GC--TGCTGCTG---CCGTTGATGGATTTGA 390 |||||||||||||||||||||||| | || |||||||| |||||||||||||||| Sbjct 240 CTCTTTTAGCGGCGGTGGAGGCGGAGGTAGCGGTGCTGCTGTTGCCGTTGATGGATTTGA 299 Query 391 GGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAG 436 ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 300 GGAGTCAAGCGGCGCCGTGAAACTGTCTGAGGCCGTTAGATCTAAG 345 Score = 446 bits (241), Expect = 2e-124 Identities = 274/290 (94%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 436 GATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAAAGACACT 495 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 639 GATATCTCAAACGAGTGTAACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAAAGACACT 698 Query 496 TGCTCAACTTAAAGAGGAGGAGAGTGTGCTCTTAAAGGAAAGGAATGGCTTGAGAAATGA 555 ||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||| Sbjct 699 TGCTCAACTTAAAGAGGAGGAGAGTTTGCTCTTAAATGAAAGGAAAAGCTTGAAAAATGA 758 Query 556 ACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAA 615 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 759 ACTCGCAACTATGCAAGATCTGGTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAA 818 Query 616 -ACTCCAGGCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAATA 674 | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 819 TA-TCCAGGCTGAATCACAAAAGAATGATGATTCTTCCTTCTTGCTCCCTGACCTTAACA 877 Query 675 TAGCTCTGGATAACAACTCGAGCCCTGAAAGTCTCTATGGAACCAGCTGA 724 || |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 878 TACCTCTGGATAACAACCCGAGCCCTGAAAGTCTCTATGGAACCAGCTGA 927 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39724079514 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5