BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15800.1

Length=1067
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312568 jgi|Araly1|312568|fgenesh1_pm.C_scaffold_1001348           507    9e-143


> Ahg312568 jgi|Araly1|312568|fgenesh1_pm.C_scaffold_1001348
Length=927

 Score =  507 bits (274),  Expect = 9e-143
 Identities = 324/346 (94%), Gaps = 11/346 (3%)
 Strand=Plus/Plus

Query  101  ATGACCGGCGGAGACTGGATTCACGAGGCTATGGGTGATGATTCATTAGTGGCGGAGGCT  160
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGACCGGCGGAGACTGGATTCACGAGGCTATGGGTGATGATTCATTGGTGGCGGAGGCT  60

Query  161  CTGATCTGTCTCCTCCATGCCGAGCCGTCACTTCCTGAGACGAAGAGCGGCGGCGCGTCG  220
            |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct  61   CTGATCTGTCTCCTCCATGCTGAACCGTCACCTCCTGAGACGAAGAGCGGCGGCGCGTCG  120

Query  221  GATCTCAAGCTGAAGTGGAGCGTGCGTCAGCCGAGGACCAAGGCGGCGAC-GTTAAGGAA  279
            ||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct  121  GATCTCAAGCTGAAGTGGAGCGTGCGTCAGCGGAGGACCAAGGCGGC-ACCGTTAAGGAA  179

Query  280  GAAGGGAGATCATGATACGCGTGCTAGTCCCACGACCCCACTTTCATGGAGCGGCGCAAC  339
            |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct  180  GAAGGGAGATCATGATACGCGTGCTAGTCCCACGACGCCTCTTTCCTGGAGCGGCGCAAC  239

Query  340  CTCTTTTAGCGGCGGTGGAGGCGG---T-GC--TGCTGCTG---CCGTTGATGGATTTGA  390
            ||||||||||||||||||||||||   | ||  ||||||||   ||||||||||||||||
Sbjct  240  CTCTTTTAGCGGCGGTGGAGGCGGAGGTAGCGGTGCTGCTGTTGCCGTTGATGGATTTGA  299

Query  391  GGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAG  436
            ||||||||| ||||  ||||||||||||||||||||||||||||||
Sbjct  300  GGAGTCAAGCGGCGCCGTGAAACTGTCTGAGGCCGTTAGATCTAAG  345


 Score =  446 bits (241),  Expect = 2e-124
 Identities = 274/290 (94%), Gaps = 2/290 (1%)
 Strand=Plus/Plus

Query  436  GATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAAAGACACT  495
            |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  639  GATATCTCAAACGAGTGTAACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAAAGACACT  698

Query  496  TGCTCAACTTAAAGAGGAGGAGAGTGTGCTCTTAAAGGAAAGGAATGGCTTGAGAAATGA  555
            ||||||||||||||||||||||||| |||||||||| ||||||||  |||||| ||||||
Sbjct  699  TGCTCAACTTAAAGAGGAGGAGAGTTTGCTCTTAAATGAAAGGAAAAGCTTGAAAAATGA  758

Query  556  ACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAA  615
            ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  759  ACTCGCAACTATGCAAGATCTGGTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAA  818

Query  616  -ACTCCAGGCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAATA  674
             | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct  819  TA-TCCAGGCTGAATCACAAAAGAATGATGATTCTTCCTTCTTGCTCCCTGACCTTAACA  877

Query  675  TAGCTCTGGATAACAACTCGAGCCCTGAAAGTCTCTATGGAACCAGCTGA  724
            || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  878  TACCTCTGGATAACAACCCGAGCCCTGAAAGTCTCTATGGAACCAGCTGA  927



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39724079514


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5