BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G15820.1 Length=1183 Score E Sequences producing significant alignments: (Bits) Value Ahg471781 jgi|Araly1|471781|fgenesh2_kg.1__1735__AT1G15820.1 1840 0.0 > Ahg471781 jgi|Araly1|471781|fgenesh2_kg.1__1735__AT1G15820.1 Length=1171 Score = 1840 bits (996), Expect = 0.0 Identities = 1121/1180 (95%), Gaps = 14/1180 (1%) Strand=Plus/Plus Query 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTCTCATTATCTCACATTG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTTTCATTATCTCACATTG 60 Query 61 TCCCTCTAAATCTCCTCTCTTTGATTCTTTCTGCTCCGAAAAACAGAGAGAGAGAACAAC 120 ||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||| Sbjct 61 TCCCTCTAAATCTCCTCCCTTTGATTCTTTCTGCTCCG-AAAAC----AGAGAG---AAC 112 Query 121 AACCAAACACTCATTTCTCCACATCTTGAGAG-aaaaaaaCAGAGCAAGTATATTAGAGA 179 ||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 113 AACCAAACACTCACTTCTCCACATCTTGAGAGAAAAAAAACAGAGGAGGTATATTAGAGA 172 Query 180 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 232 Query 240 CGGAGGCAAGA-GAGGTGCCACCGCATTGGCAAGCGGCGTAGGCACTGGAGCTCAGAGAG 298 ||||||||||| || ||||||||||||||| || |||||| ||||||||||||||||||| Sbjct 233 CGGAGGCAAGAGGA-GTGCCACCGCATTGGGAAACGGCGTTGGCACTGGAGCTCAGAGAG 291 Query 299 TTGGCAGGAAAACTCTTATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 358 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TTGGCCGGAAAACTCTGATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 351 Query 359 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCAG 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 352 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCGG 411 Query 419 GAGATTTCGGGTTCGACCCATTGGGTTTGGGGAAAGACCCGGCTTTTCTGAAATGGTACA 478 | |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 412 GTGATTACGGGTTCGACCCACTGGGTTTGGGAAAAGACCCGGCTTTTCTGAAATGGTACA 471 Query 479 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTCGTCG 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 472 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTTGTTG 531 Query 539 GCCAGGCCTGGAGCGGTGTGGCATGGTTTGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 598 ||||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||| Sbjct 532 GCCAGGCTTGGAGCGGTGTGCCTTGGTTCGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 591 Query 599 CCTTCTCGTTCGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 658 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 CCTTCTCGTTTGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 651 Query 659 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCAACGCCATGGT 718 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 652 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCGACGCCGTGGT 711 Query 719 CGAAGACCGCCGAGAATTTCGCGAACTATACCGGCGATCAGGGATACCCCGGTGGGAGAT 778 ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 712 CGAGGACCGCCGAGAATTTCGCCAACTATACCGGCGATCAGGGATATCCCGGTGGGAGAT 771 Query 779 TCTTCGATCCGTTGGGTCTCGCCGGGAAAAACCGCGACGGTGTTTATGAGCCGGACTTTG 838 |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| | | Sbjct 772 TCTTTGATCCGTTGGGTCTCGCCGGCAAAAATCGCGACGGTGTTTATGAGCCGGACGTAG 831 Query 839 AGAAGCTGGAGAGGCTGAAATTGGCAGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 898 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 832 AGAAGCTGGAGAGGCTGAAATTGGCGGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 891 Query 899 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 951 Query 959 GAGAAAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTCCAAAAACCTAATG 1018 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 952 GAGATAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTTCAAAAACCTAATG 1011 Query 1019 TTTCTCTTCTTCAATGTGACATTTGGGAAAAGATCATCAAACCATTGCT-ATAAATGTAA 1077 |||||| |||||||||||||||||||||||||||||||| | ||||||| | |||||||| Sbjct 1012 TTTCTCCTCTTCAATGTGACATTTGGGAAAAGATCATCATATCATTGCTTAAAAATGTAA 1071 Query 1078 AATGAAATCAT--GAGGCTTGTTCGTAGATAACTTTATTATCACAACTCAAATGTGAAAG 1135 |||||| |||| ||||||||||| || |||||||||||||| ||||||||| |||||| Sbjct 1072 AATGAATTCATATGAGGCTTGTTCATAAATAACTTTATTATCGCAACTCAAACATGAAAG 1131 Query 1136 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1175 |||||||||||||||||||||||||||||||||||||||| Sbjct 1132 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44146337886 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5