BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16020.1
Length=2105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471803 jgi|Araly1|471803|fgenesh2_kg.1__1757__AT1G16020.1 2992 0.0
> Ahg471803 jgi|Araly1|471803|fgenesh2_kg.1__1757__AT1G16020.1
Length=2028
Score = 2992 bits (1620), Expect = 0.0
Identities = 1837/1938 (95%), Gaps = 29/1938 (1%)
Strand=Plus/Plus
Query 10 CACAAAATGTCGCGTAA---TTCTTCTACTGATTTCAGCTCAATCGCTCAAATTCGAGTT 66
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 CACAAAATGTCACGTAATTCTTCTTCTACTGATTTCAGCTCAATCGGTCAAATTCGAGTT 60
Query 67 TGCGTTTAGAAATTGAAGTTGACTCTTCTGTTCTTGAATCTATCTCCGATCGGTGAACTA 126
|| ||||||||||| | | || || ||||||||||||||||||
Sbjct 61 TGAGTTTAGAAATT--A----A---------TC-TG------TCTCCGATCGGTGAACTA 98
Query 127 TCTCGCAGTACCAGGAGATTGATCACTCCTTCGACATTGCTCTTTGAATTCGTCCTCAAG 186
||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 99 TCTCGCAGTACCAGGTGATTGATCACTCCTTGGACATTGCTCTTTCAATTCGTTCTCAAG 158
Query 187 GGTATTAATGAGCTCGTAGAAGCTACCAGAAATGGCGTCCATGAGCTCTGGTGATGAAAG 246
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 159 GGTTTTAATGAGATCGTAGAAGCTTCCAGAAATGGCGTCCATGAGCTCTGGTGATGAAAG 218
Query 247 CCTTCGACTTTGCATGTTTGATTTGAGGAGAGGTCAAACTGAAGGACAAGAGTTAGAGAA 306
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 219 CCTTCGACTTTGCGCATTTGATTTGAGGAGGGGCCAAACTGAAGGACAAGAGTTAGACAA 278
Query 307 AATTTTGTTCTTTTATCCTGCCGATTTAGACTTCTCGACGCAGTTATCAGTGATCGGGCT 366
|||||||||||||| ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 279 GATTTTGTTCTTTTACCCTGCAGAATTAGACTTATCCACGCAGTTATCAGTGATCGGGCT 338
Query 367 CAGTGAAGGGCTTATTACTTTTACTAGACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGAT 426
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 339 CAGTGAAGGTCTTATTACTTTTACTAGACTTTTCTCTCCGGAGGCAGCTTGTGAAGTAAT 398
Query 427 CGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTAT 486
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 399 AGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCGGATATCTGGATGGTTAT 458
Query 487 GGTTGTGGAGAAAAATAAGGAGACAGGAGCGATATGGAGGATCGATGCATTAAGGAGGGT 546
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 459 GGTTGTGGAGAAAAATAAGGAGACAGGAGCAATATGGAGGATTGATGCATTAAGGAGGGT 518
Query 547 GCTTAAAGAAGTGCACTCACTCTTTGTGATGTTTCACGGGTCAATTAGGGCATTAATCGA 606
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 519 GCTTAAAGAAGTGCACTCACTCTTTGTTATGTTTCACGGGTCAATTAGGGCATTAATCGA 578
Query 607 AAAAGAACCAACAGGAGGGCTTACCCGATCACTATTGTACCCGTTCATCACAGATTATTT 666
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 579 AAAAGAACCAACAGGAGGGCTTACCCGATCACTGTTGTACCCGTTCATCACTGATTATTT 638
Query 667 AAGCACATTTCAAATATGGTCTCTCTCGGAAGACTGCTGCTGTGAATTTTTTGTTGGGAA 726
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 639 AAGCACATTTCAAAAATGGTCTCTCTCGGAAGACTGCTGCTGTGATTTTTTTGTTGGGAA 698
Query 727 GAAACTTCAGCTACCAACTTTCCGTGAAACTTTGAGAGAGCGTGGAACTGTTCAAATGCT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GAAACTTCAGCTACCAACTTTCCGTGAAACTTTGAGAGAGCGTGGAACTGTTCAAATGCT 758
Query 787 TACTTTAGCAAGGGATACTGCAGTTGAAGTTCAGTCTCTTGTTCAAGTACTAGATTCATG 846
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TACTTTAGCAAGGGACATTGCAGTTGAAGTTCAGTCTCTTGTTCAAGTACTAGATTCATG 818
Query 847 TGCTGGGAGCTTACGATGTCACTCTATGATCTTATTTCAAGATCTTTTGGTTTCAACAAC 906
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 819 TGCTGGGAGCTTACGATGTCACTCTATGATCTTATTTCAAGATCTGCTGGTTTCAACAAC 878
Query 907 CCTCTCAGCTGATGATACCGTCGACTTGTTTACATTTGCGGTAATGAGGTTGACCTCAAA 966
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 879 CCTCTCAGCTGATGATACCGTCGACTTATTTACATTTGCTGTAATGAGGTTGACCTCAAA 938
Query 967 AGCTTTATCCTCTGATACGAGTTCTTGGTCATATCTACGTAAAGGGCCTGGTTCATCTGA 1026
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AGCTTTATCCTCTGACGCAAGTTCTTGGTCATATCTACGTAAAGGGCCTGGTTCATCTGA 998
Query 1027 AATCTCTTCTAGATCTAATCTGGCACCCGTTGGCTCAATTGATTCCCTACACTCAAGAAA 1086
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 999 AATCTCTTCTAGATCTACTTTGGCACCCATTGGCTCAATTGATTCCCTACACTCAAGAAA 1058
Query 1087 CGGTAATAACATGCATCATGTTATTAGGCCACTACAAAATGATAAGTGGACAAAAGGGAA 1146
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CGGTAATGACATGCATCATGTTATTAGGCCACTACAAAATGATAAGTGGACAAAAGGGAA 1118
Query 1147 AGATGGGTTTCTAATAACCGATATTTGGGGTCTTGAGACTGGCGGCTCCCCTGATTCTGC 1206
|||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1119 AGATGGGTTTTTAATAACCGATATTTGGGGTCTAGAGACTGGCGGTTCACCTGATTCTGC 1178
Query 1207 CATCCCTACAATTTGGCTTCAGCAGACACAAGAAAGAATGTATCTCCTTGCCTATCAGCA 1266
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1179 CATCCCTACAATCTGGCTTCAGCAGACACAAGAAAGAATGTATCTCCTTGCTTATCAGCA 1238
Query 1267 TAAAAGTCTCACCTTACTTCTTCTGATGCCTACAAATGCCATTGTCAATGGAGATTTAAG 1326
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1239 TAAAAGTCTCACCTTACTTCTTCTCATGCCTACAAATGCCATTGTCAATGGTGATTTAAG 1298
Query 1327 CATCTCAGCCGTGAAACAGCAAGTTATTGAAGATGCATCACTGAGAATTTTGAAAATTGA 1386
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1299 CGTCTCAGCCGTGAAACAGCAAGTTATTGAAGATGCATCACTGAGAATTTTGAAAATCGA 1358
Query 1387 AGAGAATATTTCAAGAGGGTGGGGCGGTGAGAATGCTTACCATATTAAGGGTTACCGTTA 1446
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1359 AGAGAAGATTTCAAGAGGGTGGGGCGGTGAGAATACTTACCATATTAAGGGTTACCGTTA 1418
Query 1447 CTTAGTAGTTGATAATGACACGAAAGTATCCAGATCTTCTCCTTCAGGAAAAGTAACAAC 1506
|||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1419 CTTAGTAGTTGATAGTGACATGGAAGTATCCAGAGCTTCTCCTTCAGGAAAAGTAACAAC 1478
Query 1507 ACTTGCAAAGGAGTCTCTACTTGCACTAAACAAGCTTAGAGAAGAAGTGGATTCAGAAAA 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1479 ACTTGCAAAGGAGTCTCTACTTGCACTAAACAAGCTTAGAGAAGAAGTGGATTTAGAAAA 1538
Query 1567 AAGCCGTGC-AAAAGGACAGGAGAAAGACATGGAAATATGCATCAGAGCTAAGAACAATG 1625
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 AAGTCGTGCGAAAAGG-CAGGAGAAAGACATGGAAATATGCATCAGAGCTAAGAACAATG 1597
Query 1626 TGTGGGTGATCGCCCGTGTGACCAGAGGCAAAGAGCTTTACATGGCTTTGGAGAAAGGCA 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 TGTGGGTGATCGCCCGTGTGACCAGAGGCAAAGAGCTTTACATGGCTTTGGAGAAAGGCA 1657
Query 1686 GCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGGTATTGCAGCG 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 GCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGGTATTGCAGCG 1717
Query 1746 GAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTGGTTTTGGGAAGAGGGTTCT 1805
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1718 GAGCGTTCTTGATGGACTAAGTTTTAGTGTTCTTTCTTCTGGTTTTGGGAAGAGGTTTCT 1777
Query 1806 TCTAGTTTCAAGTACGAAGTGAAAAGCTCAGAAGAAGTAATGAGCACTTCTCTCTCAGCC 1865
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1778 TCTAGTTTCAAGTACAAAGTGAAAAGCTCAGAAGAAGTAATGAGCACTTCTCTATTAGCC 1837
Query 1866 ATTAATTTTGTTTTGTGAGAAATTGCAGAGAGGAAAACGATTGTGTTCTTAGTTGGCCTG 1925
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 ATTAATTTTGTTGTG-G-GAAATTGCAGAGAGGAAAACGATTGTGTTCTTAGTTGGCCTG 1895
Query 1926 TAGATATGTAACAATGAT 1943
||||||||||||||||||
Sbjct 1896 TAGATATGTAACAATGAT 1913
Score = 154 bits (83), Expect = 3e-36
Identities = 105/115 (91%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 1974 TTTTTTGTGCGGAGGAAAGCATCTTTCTCGTGGGTCTTAATCCTTGGTTTGGTTGGATAT 2033
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1914 TTTTTTGTGCGGAGGAAAGCATCTTTCTCGTGGGTCTTAATTCTTGGTTTGGTTAGATAT 1973
Query 2034 ACCCACTCCTGATTACTAGTA---CTATACAAGTGTTACTCTGTATCCGTTTCAA 2085
| |||||||||||||||||| |||||||||||||| || ||||||||| |||
Sbjct 1974 AGTCACTCCTGATTACTAGTAGTACTATACAAGTGTTATTCCGTATCCGTTCCAA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79189619355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5