BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16030.1 Length=2330 Score E Sequences producing significant alignments: (Bits) Value Ahg471804 jgi|Araly1|471804|fgenesh2_kg.1__1758__AT1G16030.1 3197 0.0 > Ahg471804 jgi|Araly1|471804|fgenesh2_kg.1__1758__AT1G16030.1 Length=2227 Score = 3197 bits (1731), Expect = 0.0 Identities = 2081/2248 (93%), Gaps = 32/2248 (1%) Strand=Plus/Plus Query 57 TTTTTCTCGAAATGTCTCGTTCCTCTCGTCGGATTCGTATATATAGCTTCTTCCATCGTT 116 ||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||| | Sbjct 1 TTTTTCTCGAAATGTCTCGTTTCTCTCGTCGAATTCGTATATATATCTGCTTCCATCGAT 60 Query 117 TCCGATTCTTCATCAAACAGATAAACAAACAAAAGAAATCGAAAAACCTCAC-TTCCAAT 175 |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 61 TCCGATTCTTCATCAACCAGATAAACAAACAACAGAAATCGAAAAACCTCACTTTCCAAT 120 Query 176 TTCATTCAATTACTGAAGCttttttttAGCAACAATGGCGACGAAATCAGAGAAAGCTAT 235 |||| |||||||||||||||||||| ||| ||||||||||||||||||||| || ||||| Sbjct 121 TTCAATCAATTACTGAAGCTTTTTTCTAGTAACAATGGCGACGAAATCAGACAAGGCTAT 180 Query 236 TGGTATCGATCTCGGCACTACATACAGTTGTGTCGGAGTTTGGATGAATGATCGTGTGGA 295 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGGAATCGATCTCGGCACTACATACAGTTGTGTCGGAGTTTGGATGAATGATCGTGTGGA 240 Query 296 GATCATTCCGAACGATCAGGGAAACCGTACGACGCCGTCGTACGTCGCCTTCACTGATAC 355 ||| || || ||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 241 GATTATCCCTAACGATCAGGGAAACCGTACGACACCGTCGTACGTCGCCTTCACTGACAC 300 Query 356 TGAGCGGCTGATCGGAGACGCGGCAAAGAATCAAGTGGCTTTGAATCCTCAGAACACTGT 415 |||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 301 TGAGCGGCTGATTGGAGACGCCGCGAAGAATCAAGTGGCGTTGAATCCTCAGAACACTGT 360 Query 416 ATTCGATGCGAAACGTCTCATCGGAAGGAAGTTCTCTGATCCTTCTGTTCAGAGTGACAT 475 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | Sbjct 361 CTTCGATGCGAAACGTCTCATTGGAAGGAAATTCTCTGATCCTTCTGTTCAGAGTGATTT 420 Query 476 ACTCCACTGGCCGTTCAAGGTTGTTTCCGGCCCCGGTGAGAAGCCGATGATAGTCGTTTC 535 || ||||||||||||||||||||||| || ||||| || || ||||||||||| || || Sbjct 421 GCTTCACTGGCCGTTCAAGGTTGTTTCTGGTCCCGGAGATAAACCGATGATAGTGGTCTC 480 Query 536 GTATAAGAATGAAG-AGAAGCAGTTTTCTCCTGAGGAAATATCTTCCATGGTGTTGGTGA 594 || ||||| | || |||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 481 TTACAAGAACG-AGCAGAAGCAGTTCTCTCCTGAGGAGATATCTTCCATGGTGTTGGTGA 539 Query 595 AGATGAAGGAAGTCGCTGAGGCTTTCTTAGGTCGCAC-AGTTAAAAACGCCGTTGTAACG 653 ||||||||||||| |||||| ||||| |||||| ||| | |||||||||||||||||||| Sbjct 540 AGATGAAGGAAGTAGCTGAGTCTTTCCTAGGTCACACTA-TTAAAAACGCCGTTGTAACG 598 Query 654 GTTCCGGCGTATTTTAACGATTCGCAGAGACAGGCTACGAAGGACGCCGGAGCTATCTCT 713 |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 599 GTTCCGGCGTATTTCAACGATTCGCAGAGGCAGGCAACGAAGGACGCCGGAGCTATTTCT 658 Query 714 GGGCTTAATGTTTTGAGGATAATCAATGAGCCGACTGCTGCAGCTATAGCTTATGGTTTG 773 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 659 GGGCTGAATGTTTTGAGGATAATCAATGAGCCGACTGCTGCAGCTATAGCTTACGGTTTG 718 Query 774 GATAAGAAGGGTACGAAGGCCGGTGAGAAGAACGTTTTGATTTTCGATCTCGGTGGTGGA 833 || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GACAAGAAGGGTACCAAAGCCGGTGAGAAGAACGTTTTGATTTTCGATCTCGGTGGTGGA 778 Query 834 ACTTTTGATGTTTCGCTGTTGACGATTGAAGAAGGTGTCTTTGAAGTGAAAGCTACTGCT 893 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 779 ACTTTTGATGTTTCGCTGTTGACGATTGAAGAAGGTGTTTTTGAAGTGAAAGCTACTGCT 838 Query 894 GGAGATACTCATCTTGGTGGTGAAGACTTTGACAACAGACTTGTGAACCATTTCGTTGCG 953 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 839 GGAGATACTCATCTTGGTGGTGAAGACTTTGACAACAGACTTGTGAATCATTTCGTTGCG 898 Query 954 GAGTTTAGGAGGAAACACAAGAAGGATATTGCTGGGAATGCGAGAGCTCTTAGGAGGCTA 1013 ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| | Sbjct 899 GAGTTTAAGAGGAAACACAAGAAGGATATTTCTGGGAATGCGAGGGCTCTTAGGAGGTTG 958 Query 1014 AGGACAGCTTGTGAGAGAGCAAAGAGAACACTTTCGTCCACGGCTCAGACGACTATTGAG 1073 ||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct 959 AGGACTGCTTGTGAGAGAGCAAAGAGAACGCTTTCTTCCACAGCTCAGACGACTATTGAG 1018 Query 1074 ATTGATTCTCTGCACGAGGGTATTGACTTCTATGCGACGATATCACGTGCAAGGTTTGAG 1133 ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1019 ATTGATTCTTTGCACGAGGGTATTGACTTCTATGCGACGATCTCACGTGCGAGGTTTGAG 1078 Query 1134 GAGATGAACATGGATTTGTTCAGGAAATGTATGGATCCTGTGGAGAAAGTTCTTAAAGAC 1193 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1079 GAGATGAACATGGATTTGTTCAGGAAATGTATGGATCCTGTAGAGAAAGTTCTTAAAGAC 1138 Query 1194 GCCAAGCTCGACAAGAGCAGTGTGCACGATGTTGTTCTGGTTGGAGGGTCGACGAGGATT 1253 |||||| ||||||||||||||||||||||||| |||||||| ||||| || ||||||||| Sbjct 1139 GCCAAGATCGACAAGAGCAGTGTGCACGATGTGGTTCTGGTCGGAGGATCTACGAGGATT 1198 Query 1254 CCGAAAATTCAACAGCTTTTGCAAGATTTCTTTAATGGGAAGGAGTTATGCAAGAGCATA 1313 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| Sbjct 1199 CCGAAAATTCAACAGCTTTTGCAAGATTTCTTCAACGGGAAGGAGCTATGCAAGAGCATA 1258 Query 1314 AACCCTGATGAAGCTGTTGCCTATGGAGCTGCGGTTCAGGCTGCGATTCTTACAGGTGAA 1373 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 1259 AACCCTGATGAAGCTGTTGCCTATGGAGCTGCGGTTCAGGCTGCGATACTGACTGGTGAA 1318 Query 1374 GGAAGTGAAAAGGTCCAGGATCTTCTGCTTCTTGATGTTGCTCCGCTTAGCCTTGGACTT 1433 ||||| || |||||||| |||||||||||||||||||| || || || ||||||||| || Sbjct 1319 GGAAGCGACAAGGTCCAAGATCTTCTGCTTCTTGATGTGGCGCCCCTAAGCCTTGGAATT 1378 Query 1434 GAGACAGCAGGTGGGGTCATGACTGTGTTAATTCCAAGAAACACGACGGTTCCTTGTAAG 1493 |||||||| |||||||| |||| ||||||||| || || || |||||||||||||||||| Sbjct 1379 GAGACAGCCGGTGGGGTGATGAGTGTGTTAATCCCGAGGAATACGACGGTTCCTTGTAAG 1438 Query 1494 AAGGAGCAAGTGTTCTCTACGTATGCAGACAATCAACCAGGCGTTCTGATCCAAGTCTAC 1553 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1439 AAGGAGCAAGTGTTCTCTACGTATGCGGACAATCAGCCAGGCGTTCTGATCCAAGTCTAT 1498 Query 1554 GAAGGAGAACGTGCAAGGACCAGAGATAACAACCTTCTCGGAACTTTCGAGCTCAAGGGC 1613 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 1499 GAAGGAGAACGTGCAAGGACCAAAGATAACAACCTTCTCGGGACTTTCGAGCTCAAGGGC 1558 Query 1614 ATTCCTCCTGCTCCACGTGGGGTTCCTCAAATCAATGTTTGCTTCGACATTGACGCGAAT 1673 ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct 1559 ATTCCTCCTGCACCACGTGGAGTTCCTCAAATCAATGTTTGCTTTGACATGGACGCGAAT 1618 Query 1674 GGGATCTTAAATGTGTCGGCTGAGGATAAAACCGCTGGTGTGAAGAACCAGATCACGATC 1733 |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1619 GGGATCCTAAATGTGTCGGCGGAGGATAAAACCGCTGGTGTAAAGAACCAGATCACGATC 1678 Query 1734 ACCAACGACAAAGGAAGGTTGAGTAAAGAGGAGATAGAGAAGATGGTGCAAGATGCTGAG 1793 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1679 ACGAACGACAAAGGAAGGTTGAGTAAAGAGGAGATAGAGAAGATGGTGCAAGATGCGGAG 1738 Query 1794 AAGTACAAGGCTGAGGATGAGCAAGTGAAGAAGAAGGTGGAGGCCAAGAATTCGCTTG-A 1852 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| | Sbjct 1739 AAGTACAAGGCTGAGGATGAGCAAGTGAAGAAGAAAGTGGAGGCCAAGAACTCG-TTGGA 1797 Query 1853 GAACTATGCTTACAACATGAGAAACACTATCAAGGATGAGAAACTCGCACAGAAACTA-A 1911 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 1798 GAACTATGCTTACAACATGAGAAACACTATCAAGGATGAGAAACTCGCGCAGAAGTTAGA 1857 Query 1912 CTCAAGAGGATAAGCAGAAGATTGAGAAGGCGATTGATGAAACAATTGAATGGATCGAAG 1971 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 1858 -TCAAGAGGATAAGCAGAAGATTGAGAAGGCGATTGATGAGACAATCGAATGGATTGAAG 1916 Query 1972 GAAACCAGCTGGCGGAAGTTGATGAGTTTGAGTACAAGTTGAAAGAGTTAGAAGGTATTT 2031 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1917 GAAACCAGCTGGCGGAAGTTGATGAATTTGAGTACAAGTTGAAAGAGTTGGAAGGTATTT 1976 Query 2032 GCAACCCAATCATCTCAAAGATGTATCAGGGTGGTGCTGCTG--C----TGGAGGTATGC 2085 ||||||||||||||||||||||||||||||||||||| | | | ||||||||||| Sbjct 1977 GCAACCCAATCATCTCAAAGATGTATCAGGGTGGTGCCGGAGGTCCCACTGGAGGTATGC 2036 Query 2086 CGACAGATGGTGATTTCAGTAGCTCAGGTGCTGCTGGAGGTCCCAAGATCGAAGAGGTGG 2145 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2037 CGACAGATGGTGGTTTCAGTAGCTCAGGTGGTGCTGGAGGTCCCAAGATCGAAGAGGTGG 2096 Query 2146 ATTAGAGCGTGTTTAGTGTGTTAAGACGAAAGAGTGGCTTTGGACCATTAGCGAGTCTTT 2205 | || | ||||| || |||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 2097 ACTAAACCGTGTGCAGAGTGTAAAGACAAAAGAGTGGCTTTGGACCATTTGCGAGTCTTT 2156 Query 2206 TCTTTGTATTGTGTCAAATAGTGTTGTGTACTCATAGGTGTTTTGCTAGTGAACGATAGT 2265 |||| | || | | ||| || | | ||||||||||||||||||||| ||||| Sbjct 2157 -CTTT-T---GT---A--T--TGT-GT-T-C--ATAGGTGTTTTGCTAGTGAACTATAGT 2199 Query 2266 TGTATGCTTTACATATTTCAGCTGTTTC 2293 ||||||||||||||||||||| |||||| Sbjct 2200 TGTATGCTTTACATATTTCAGTTGTTTC 2227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87759924480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5