BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16080.1 Length=1285 Score E Sequences producing significant alignments: (Bits) Value Ahg471810 jgi|Araly1|471810|fgenesh2_kg.1__1764__AT1G16080.1 1921 0.0 > Ahg471810 jgi|Araly1|471810|fgenesh2_kg.1__1764__AT1G16080.1 Length=1238 Score = 1921 bits (1040), Expect = 0.0 Identities = 1197/1267 (94%), Gaps = 33/1267 (3%) Strand=Plus/Plus Query 11 ACTGTTCAAATTAGTCCAACCAAAACCATGAGAGGCCAC-A-A-CATCGTCGAAGCCCAT 67 ||||||||||||||| || ||||||||||||||||| | | |||||||||||||||| Sbjct 1 ACTGTTCAAATTAGT----CC-AAACCATGAGAGGCCACAACATCATCGTCGAAGCCCAT 55 Query 68 TATTATCACCATGGCTAAAGCCAGTAGTACTCTGTTTGCTGTTTCCTGCTCCGCTTCAGC 127 ||| ||||| |||||||||||||| || |||||||||||||| |||||||| |||||||| Sbjct 56 TATCATCACTATGGCTAAAGCCAGCAGCACTCTGTTTGCTGTCTCCTGCTCAGCTTCAGC 115 Query 128 TCGTTTCTCTTTCCTCCGACGCTCTGAATCTCTTAAACCCTCAGTTTCAAGAGCGAGATT 187 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 116 TCGTTTCTCTTTCCTCCGACACTCTGAATCTCTTAAACCCTCAGTTTCAAGAGCGAGATT 175 Query 188 CGCCGTTCCAATGGCTATGGCCGCCGCGTCAGCTGCCACCGCTAAAAAACTAGCGCCTGC 247 |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 176 CGCCGTCCCAATGGCTATGGCCGCCGCGTCAGCTGCCACAGCTAAAAAACTAGCACCTGC 235 Query 248 TGTGATTGTGGGTGGCGGAAGAGTCGGAAGGGCGTTACAGGAAATGGGTAATGGCGAGGA 307 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 236 CGTGATTGTGGGTGGCGGAAGAGTCGGAAGGGCGTTACAGGAAATGGGTAATGGAGAGGA 295 Query 308 TTTGTTGGTGAAGAGAGGAGAAGCAGTTCCGGTTGATTTTGAAGGACCCATTTTGGTTTG 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TTTGTTGGTGAAGAGAGGAGAAGCAGTTCCGGTTGATTTTGAAGGACCCATTTTGGTTTG 355 Query 368 TACAAGAAATGATGATCTCGATGCTGTTCTTGAAGCTACTCCTCAGTCTAGATGGAAAGA 427 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TACTAGAAATGATGATCTCGATGCTGTTCTTGAAGCTACTCCTCAGTCTAGATGGAAAGA 415 Query 428 TTTGGTCTTCTTCCAAAATGGAATGATGGAGCCGTGGTTTGAGAGCAAAGGTTTGGGTGA 487 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TTTGGTCTTCTTTCAAAATGGAATGATGGAGCCGTGGTTTGAGAGCAAAGGTTTGGGTGA 475 Query 488 TACAGACCAAGTGTTGGCCTATTTTGCTGTGTCAAAGCTCGGCGAGCCTCCCGTGGATGG 547 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TACAGACCAAGTCTTGGCCTATTTTGCTGTGTCAAAGCTCGGCGAGCCTCCCGTGGATGG 535 Query 548 AAAGACTGACACTAACCCAGAAGGTCTTACTGCTGCTTATGGAAAATGGGCTTCAGAGAT 607 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 536 AAAGACTGACACTAACCCAGAAGGTCTAACTGCTGCTTATGGAAAATGGGCTTCAGAGAT 595 Query 608 AGCTGCAAGATTGCAATCTGGTGGCCTCTCTTGCAAGGTACTTGACAAAGAAGCTTTTCA 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 AGCTGCAAGATTGCAATCTGGTGGCCTCTCTTGCAAGGTACTTGACAAAGAAGCTTTTCA 655 Query 668 GAAGCAAATGTTGGAGAAACTCATTTGGATTTGTGCATTTATGCTTGTTGGAGCTCGTCA 727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GAAGCAAATGTTGGAGAAACTCATTTGGATTTGTGCATTTATGCTTGTTGGAGCTCGTCA 715 Query 728 TCCAGGTGCAAGTGTTGGCACGGTGGAGAAAGAATACAGAGATGAAGTGTCGAGACTCAT 787 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 716 TCCAGGTGCAAGTGTTGGCACGGTGGAGAAAGAATACAGAGATGAAGTGTCGATACTCAT 775 Query 788 CCAAGAACTTGCAGCAGCTGCTGCCGCGGAAAAAGGACTAACCTTTGAAGAGAACATGGT 847 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 776 CCAAGAACTCGCAGCAGCTGCTGCTGCGGAAAAAGGACTAACCTTTGAAGAGAACATGGT 835 Query 848 GGAAAGACTATGTGCTTATTCACGAGCTGTTTCTCATTTCCCAACTGCTGTTAAAGAATT 907 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 836 GGAGAGACTATGTGCTTATTCACGAGCTGTTTCTCATTTCCCGACTGCTGTCAAAGAATT 895 Query 908 TAAATGGAGGAATGGTTGGTTTTATTCACTCTCAGAGAAGGCGATTGCGGAAGGGCAACC 967 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 896 TAAATGGAGGAATGGTTGGTTTTATTCACTCTCAGAGAAGGCGATTGCAGAAGGGAAACC 955 Query 968 GGATCCGTGTCCCCTCCATACCGAATGGCTGAAAGAGCTTAAAGTGATATAGAGCCAGTC 1027 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 GGATCCGTGTCCCCTCCATACCGAATGGCTGAAAGAGCTTAAAGTGATATAGAGCCAGTG 1015 Query 1028 TTTCTAAATTGTGAGTATCTGGATTAAGTATCATTCTTACATATTTTAAGTAGATGATCT 1087 | | || |||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1016 TGTGTA--TTGTGAGTATCTGGATTAAGTAGCATTCTTACACATTTTAAGTAGATGATCT 1073 Query 1088 GAAACTAGTGTCAACTGTGTACACGCCTGAGAAGTGaaaaaaaGATGTAATTTTTTAATA 1147 ||||||||| | |||||||||||||| |||||||||||||||| | || | || Sbjct 1074 GAAACTAGTATGAACTGTGTACACGCATGAGAAGTGAAAAAAA-A---AAG-----A-TA 1123 Query 1148 AAGAAAGAGAATCAGTTCACGCTTTGTAAAATGTCCAGACTTTTATATGTGTAAACTTGT 1207 | |||||||||| ||||||||| |||||||||||||| ||||||||||||| Sbjct 1124 A----------TCAGTTCACGTTTTGTAAAAAGTCCAGACTTTTATCTGTGTAAACTTGT 1173 Query 1208 GCATTTTCA-AGAATCAAAACTTTTCTGCTTCTAGACTCCCATCAATTAGGGAAGACTAG 1266 ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1174 GCATTTT-ATAGAATCAAAACTTTTCTGCTTCTAGACTCCCATCAAT-AGGGAAGACTGG 1231 Query 1267 AATCTTC 1273 ||||||| Sbjct 1232 AATCTTC 1238 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48034875420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5