BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16240.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471821 jgi|Araly1|471821|fgenesh2_kg.1__1775__AT1G16240.3 1439 0.0
> Ahg471821 jgi|Araly1|471821|fgenesh2_kg.1__1775__AT1G16240.3
Length=1024
Score = 1439 bits (779), Expect = 0.0
Identities = 866/907 (95%), Gaps = 10/907 (1%)
Strand=Plus/Plus
Query 186 ACAAAGGTCCGAGAAATAATTTGGAATAATGGCGTCTTCATCGGATTCATGGATGAGAGC 245
||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 121 ACAAAGGTCCGAGGAATAATTTGGGATAATGGCGTCTTCGTCGGATTCATGGATGAGAGA 180
Query 246 ATACAACGAGGCTTTAAAACTCTCTGAGGAGATTAATGGAATGATATCAGAAAGAAGTTC 305
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATACAACGATGCTTTAAAACTCTCTGAGGAGATTAATGGAATGATATCAGAAAGAAGTTC 240
Query 306 ATCGGCTGTCACAGGGCCTGATGCTCAGCGTCGTGCTTCAGCTATACGAAGGAAGATCAC 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGGCTGTCACAGGGCCTGATGCTCAGCGTCGTGCTTCAGCTATACGAAGGAAGATCAC 300
Query 366 CATTTTCGGTAACAAATTAGATAGTCTGCAGTCTCTTCTTGCTGAAATTCATGGAAAACC 425
||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 301 CATTTTCGGTACCCGATTAGACAGTCTGCAGTCTCTTCTTGCTCAAATTCATGGAAAACC 360
Query 426 TATTTCAGAGAAAGAGATGAATCGGCGAAAGGATATGGTAGGGAATCTGAGGTCAAAAGC 485
|||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 361 TATTTCTGAGAAAGAGATGAATCGGCGCAAGGATATGGTAGGGAATTTGAGATCAAAAGC 420
Query 486 AAACCAGATGGCGAATGCTTTGAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTCGG 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 AAACCAGATGGCGAATGCTTTGAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTTGG 480
Query 546 GCCAGATATCAAGCCGGATGATTCCATGAGCAGAGTTACTGGCATGGATAACCAAGGAAT 605
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 GCCAGAAATAAAGCCGGATGATTCCATGAGCAGAGTTACTGGCATGGATAACCAGGGAAT 540
Query 606 TGTTGGATATCAACGACAAGTTATGAGAGAACAAGACGAAGGACTTGAGCAATTGGAGGG 665
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTTGGTTATCAACGACAAGTTATGAGAGAACAAGACGAAGGACTTGAGCAATTGGAGGG 600
Query 666 AACAGTCATGAGCACAAAACACATTGCTCTGGCTGTTAGTGAAGAGCTTGACTTGCAGAC 725
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 AACAGTCATGAGCACAAAACACATTGCTCTGGCTGTTAGTGAAGAGCTTAACTTGCAGAC 660
Query 726 TAGGCTTATTGATGACTTAGATTACCATGTGGATGTTACTGACTCTCGCTTAAGGAGAGT 785
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 661 AAGGCTTATTGATGACTTAGATTACCATGTGGATGTCACTGACTCTCGCTTACGGAG--T 718
Query 786 GCAGAAGAGCCTTGCTGTCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAAT 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCAGAAGAGCCTTGCTGTCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAAT 778
Query 846 GCTCTTGTCAGTGCTGGGGATCGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTA 905
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCTCTTGTCAGTGCTGGGGATTGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTA 838
Query 906 TATGTAATACCAACATCAGACAACTTATAAGTTCCTCTGTAGGTC-C----ACTGGCCTC 960
| |||||||||||||||||| |||||||||||| ||||||||||| | |||||||||
Sbjct 839 TCTGTAATACCAACATCAGAAAACTTATAAGTTTCTCTGTAGGTCACTGTCACTGGCCTC 898
Query 961 TACTCTCTATGTGAATGGTTGCAATGTATTT-CCTCATTCCACATTTGTGGCTGAGCTTT 1019
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 899 TACTCTCTATGTGAATGGTTGCAATGTATTTTCCTCATTCCACATTTGTGGTTGAGCTTT 958
Query 1020 TCATTTCTCTTCTGTTACCAA-AACCCTTTAAGTAATATATAATGTGTGCAGTTATCACA 1078
|||||||||||||||||| || ||||||| ||||| |||||||||||||||||| |||||
Sbjct 959 TCATTTCTCTTCTGTTAC-AAGAACCCTTAAAGTATTATATAATGTGTGCAGTTTTCACA 1017
Query 1079 GTTTGCT 1085
|||||||
Sbjct 1018 GTTTGCT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5