BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16310.1 Length=1399 Score E Sequences producing significant alignments: (Bits) Value Ahg471828 jgi|Araly1|471828|fgenesh2_kg.1__1782__AT1G16310.1 2065 0.0 Ahg923514 jgi|Araly1|923514|scaffold_104795.1 353 2e-96 Ahg914444 jgi|Araly1|914444|Al_scaffold_0001_4698 322 5e-87 Ahg946829 jgi|Araly1|946829|scaffold_703058.1 207 1e-52 Ahg931249 jgi|Araly1|931249|scaffold_303706.1 130 3e-29 Ahg923513 jgi|Araly1|923513|scaffold_104794.1 110 4e-23 > Ahg471828 jgi|Araly1|471828|fgenesh2_kg.1__1782__AT1G16310.1 Length=1351 Score = 2065 bits (1118), Expect = 0.0 Identities = 1250/1311 (95%), Gaps = 20/1311 (2%) Strand=Plus/Plus Query 3 ATATGCCGCTTAA---CTCCTATATTTTCTTTCTCTTTCTCACAACTTCCCCTAGAAACA 59 |||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATATGCGGCTTAACTCCTCCTATATTTTCTTTCTCTTTCTCACAACTT-CCCTAGAAACA 59 Query 60 CTTTTTTCGGAATTCGAACGCACAGCGATCGGATAATGGCGACGGAGCATATAACT-CGT 118 ||||||||| |||||||||||| || |||||||||||||||||||||||||| | | ||| Sbjct 60 CTTTTTTCGTAATTCGAACGCAGAGAGATCGGATAATGGCGACGGAGCATAT-AGTCCGT 118 Query 119 ACGGGAGATGAATACAATGTCGAGCTTTTACCTAGTGACGACGATGCGCCGCCGCTTGAA 178 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 119 ACGAAAGACGAATACAATGTCGAGCTTTTACCTAGTGACGACGATGCGCCGCCGCTTCAA 178 Query 179 TCGTCTTGGCGTCTCAACCTCGACGCTTTTCAA-------C-T---C-CCTTCTTCCACC 226 ||||||||||||||||||||||| ||||||||| | | | |||||||||||| Sbjct 179 TCGTCTTGGCGTCTCAACCTCGAGGCTTTTCAACTTCCTTCTTCACCGCCTTCTTCCACC 238 Query 227 GGTGGCCGTCACGACGGACGTACTCGCTTTTCTCGCTATTTTCGTACTCCAAGAAAGGAA 286 |||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct 239 GGTGGCCGTCACGACGCTCGTACTCGCTTTTCTCGATATTTCCGTACTCCCAGAAAGGAA 298 Query 287 CGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCAATGAGATG 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCAATGAGATG 358 Query 347 GAGACTATCCACGAAAATGGTTTTGCATCTGGTGTTCCAACTGAGGAAGAAATGAAGAAG 406 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 359 GAGACTATCCACGAAACTGGTTTTGCATCTGGTGTTCCTACTGAGGAAGAAATGAAGAAG 418 Query 407 CTTGCAAAGAGTGAGAGACTTGCGGTTCACATATCGAACGCAACAAATTTGGTGCTTTTT 466 ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 419 CTTGCAAAGAGTGAGAGGCTGGCAGTTCACATATCGAACGCAACAAATTTGGTGCTTTTT 478 Query 467 GTAGCAAAAGTTTATGCCTCTATGGAGAGTAGATCCATGGCTGTGATTGCTTCAACTTTG 526 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 479 GTGGCAAAAGTTTATGCCTCTATGGAAAGTAGATCCATGGCTGTGATTGCTTCAACTTTG 538 Query 527 GACTCTCTTTTGGATCTCTTGTCTGGTTTTATCCTCTGGTTTACAGCTAATGCCATGAGA 586 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 539 GACTCTCTCTTGGATCTCTTGTCTGGTTTTATTCTCTGGTTTACAGCTAATGCCATGAGA 598 Query 587 AAACCAAACCAGTTTCACTATCCTATCGGAAAGCGCCGGATGCAACCTGTGGGTATCATT 646 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 599 AAACCAAACCAGTTTCACTATCCTATCGGAAAGCGCCGGATGCAACCTGTGGGCATCATT 658 Query 647 GTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGGCAA 706 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 659 GTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTACTAGAGTCAGGAAGGCAA 718 Query 707 CTAGTTGCCAAGAGTGGTATTCATATGAATAGCACAGAGGAGAAATGGATGATTGGTATC 766 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 719 CTAGTTGCCAAGAGTGGTATTCACATGAATAGCACAGAGGAGAAATGGATGATCGGGATC 778 Query 767 ATGGTCTCTGTCACCATCGTGAAGTTTCTTCTAATGCTTTATTGCAGAGGATTTCAGAAC 826 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ATGGTCTCTGTCACCATTGTGAAGTTTCTTCTAATGCTTTATTGCAGAGGATTTCAGAAC 838 Query 827 GAAATCGTTAGGGCCTATGCTCAAGATCACCTCTTTGACGTCGTCACTAATTCAATCGGC 886 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 839 GAAATCGTTAGGGCCTATGCTCAGGATCACCTCTTTGACGTTGTCACTAATTCAATCGGC 898 Query 887 TTAGCAACAGCTGTCTTGGCCGTCAAATTCTACTGGTGGATTGATCC-TACCGGTGCTAT 945 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 899 TTAGCAACAGCTGTCTTGGCCGTCAAATTCTACTGGTGGATTGATCCCT-CCGGTGCTAT 957 Query 946 ACTTATTGCTTTGTACACCATAGCAACATGGGCAAGAACCGTACTAGAGAACGTCCATTC 1005 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 958 ACTTATTGCTTTGTACACCATAGCAACATGGGCAAGAACGGTACTAGAGAACGTCCATTC 1017 Query 1006 ACTGATCGGCCGCTCTGCGCCACCAGATTTCTTGGCGAAACTGACATTCTTGATATGGAA 1065 |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1018 GCTGATCGGACGCTCTGCCCCGCCAGATTTCTTGGCGAAACTGACATTCTTGATATGGAA 1077 Query 1066 CCATCACGAACAAATTAAGCATATTGACACAGTAAGGGCTTACACTTTTGGGTCACACTA 1125 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 CCATCACGAACAAATCAAGCATATTGACACAGTAAGGGCTTACACTTTTGGGTCACACTA 1137 Query 1126 CTTTGTGGAAGTGGACATTGTTTTGCCAGAGGACATGAGACTACAAGAGGCTCACAACAT 1185 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 CTTTGTGGAAGTAGACATTGTTTTGCCAGAGGACATGAGACTACAAGAGGCTCACAACAT 1197 Query 1186 CGGAGAGACTCTTCAGGAAAAGCTCGAGCAGCTCGCTGAAGTAGAACGAGCTTTTGTCCA 1245 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1198 CGGAGAGACTCTTCAGGAGAAGCTCGAGCAGCTTGCTGAAGTAGAACGAGCTTTTGTCCA 1257 Query 1246 CATAGACTTTGAGTTCACTCATCGTCCTGAACACAAGTGTAACTAGATTTT 1296 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 CATAGACTTTGAGTTCACTCATCGTCCTGAACACAAGTGTAACTAGATTTT 1308 > Ahg923514 jgi|Araly1|923514|scaffold_104795.1 Length=290 Score = 353 bits (191), Expect = 2e-96 Identities = 262/295 (89%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 323 CTCCTCGAGGGTTTCAATGAGATGGAGACTATCCACGAAAATGGTTTTGCATCTGGTGTT 382 |||||||| |||||| ||||||||||||||||||| |||| |||||| |||||||||||| Sbjct 1 CTCCTCGAAGGTTTCGATGAGATGGAGACTATCCATGAAACTGGTTTGGCATCTGGTGTT 60 Query 383 CCAACTGAGGAAGAAATGAAGAAGCTTGCAAAGAGTGAGAGACTT-GCGGTTCACATATC 441 ||||||||| |||||||||| |||||||||| |||||||||| || || ||||||||| | Sbjct 61 CCAACTGAGAAAGAAATGAACAAGCTTGCAATGAGTGAGAGA-TTGGCAGTTCACATA-C 118 Query 442 -GAACGCAACAAATTTGGTGCTTTTTGTAG-CAAAAGTTTATGCCTCTATGGAGAGTAGA 499 ||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 119 TAAACACAACAAATTTGGTGCTTTTTGT-GTCAAAAGTTTATGCCTCTATGGAGAGTAGA 177 Query 500 TCCATGGCTGTGATTGCTTCAACTTT-GGACTCTCTTTTGGATCTCTTGTCTGGTTTTAT 558 ||||||| |||||||||||||||||| || |||||| || |||| ||||||||||||||| Sbjct 178 TCCATGGTTGTGATTGCTTCAACTTTAGG-CTCTCTCTTAGATCACTTGTCTGGTTTTAT 236 Query 559 CCTCTGGTTTACAGCTAATGCCATGAGAAAACCAAACCAGTTTCACTATCCTATC 613 || |||||||| |||||| |||||||| | | || | ||||||||||||| ||| Sbjct 237 TCTTTGGTTTACGGCTAATACCATGAGATA-CTAATC-AGTTTCACTATCCAATC 289 > Ahg914444 jgi|Araly1|914444|Al_scaffold_0001_4698 Length=387 Score = 322 bits (174), Expect = 5e-87 Identities = 200/213 (94%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 279 GAAAGGAACGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCA 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 GAAAGGAACGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCA 124 Query 339 ATGAGATGGAGACTATCCACGAAAATGGTTTTGCATCTGGTGTTCCAACTGAGGAAGAAA 398 |||||||||||||||| | |||| | ||||||||||||||||||||||| ||||||||| Sbjct 125 ATGAGATGGAGACTATAAATGAAACTTGTTTTGCATCTGGTGTTCCAACTAAGGAAGAAA 184 Query 399 TGAAGAAGCTTGCAAAGAGTGAGAGACTTGCGGTTCACATATCGAACGCAACAAATTTGG 458 | |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| Sbjct 185 TAAAGAAGCTTGCAAAGAGTGAGAGACTGGCAGTTCACATATCAAACGCAACAAATTTGG 244 Query 459 TGCTTTTTGTAGCAAAAGTTTATGCCTCTATGG 491 |||||||||| ||||| ||||||||||| |||| Sbjct 245 TGCTTTTTGTGGCAAAGGTTTATGCCTCCATGG 277 > Ahg946829 jgi|Araly1|946829|scaffold_703058.1 Length=383 Score = 207 bits (112), Expect = 1e-52 Identities = 142/157 (90%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 446 GCAACAAATTTGGTGCTTTTTGTAGCAAAAGTTTATGCCTCTATGGAGAGTAGATCCATG 505 |||||| || ||||||||||| | ||||| ||||||| |||||||||||||||||||||| Sbjct 12 GCAACATATATGGTGCTTTTTATGGCAAACGTTTATGACTCTATGGAGAGTAGATCCATG 71 Query 506 GCTGTGATTGCTTCAACTTTGGACTCTCTTTTGGATCTCTTGTCTGGTTTTATCCTCTGG 565 |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| Sbjct 72 GCTGTGATTGCTTCAAATTTGGACTCTCTCGTGGATCTCTTGTCTGGTTTTATTGTCTGG 131 Query 566 TTTACAGCTAATGCCATGAGAAAACCAAACCAGTTTC 602 |||||| |||||| |||||||||||||||| ||||| Sbjct 132 TTTACATCTAATGAAATGAGAAAACCAAACCGGTTTC 168 > Ahg931249 jgi|Araly1|931249|scaffold_303706.1 Length=425 Score = 130 bits (70), Expect = 3e-29 Identities = 70/70 (100%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 641 ATCATTGTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGA 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 ATCATTGTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGA 111 Query 701 AGGCAACTAG 710 |||||||||| Sbjct 112 AGGCAACTAG 121 > Ahg923513 jgi|Araly1|923513|scaffold_104794.1 Length=298 Score = 110 bits (59), Expect = 4e-23 Identities = 63/65 (97%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 644 ATTGTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGG 703 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 273 ATTGTGTTTGTTTCCGTGATAGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGG 214 Query 704 CAACT 708 ||||| Sbjct 213 CAACT 209 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52297906385 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5