BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16320.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471829 jgi|Araly1|471829|fgenesh2_kg.1__1783__AT1G16320.1 1748 0.0
Ahg477119 jgi|Araly1|477119|fgenesh2_kg.2__2249__AT1G79510.1 636 0.0
Ahg497547 jgi|Araly1|497547|fgenesh2_kg.891__1__AT1G79510.1 623 9e-178
> Ahg471829 jgi|Araly1|471829|fgenesh2_kg.1__1783__AT1G16320.1
Length=1104
Score = 1748 bits (946), Expect = 0.0
Identities = 1057/1110 (95%), Gaps = 10/1110 (1%)
Strand=Plus/Plus
Query 24 ATTTCTCTGGCTCAGAATCGACGCCATGGAAATGTAAAGAAGAAACAAAGACGAGCTCTC 83
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 ATTTCTCTGGCTCAGAATCGTCGCCATGAAAATGT-AAGAAGAAACAAAGACGAGCTCTC 59
Query 84 AAATCCAGCAGCAATGGCTTTTCTTCTTTCTAATCTATCATCTCCGTCAATCCATCTTCA 143
||| |||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 60 AAACCCAGAAGCCATGGCTTTTCTTCTTCCTAATCTATCATCTCCCTCAATCCATCTTCA 119
Query 144 AACCGGAAAATACCCAAACCTTAAACCCATTTTCAGTCAATCTCTATCGTC-T--TCGTC 200
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 120 AACCGGAAAATACCCAAACCTTAAACCCATTTTCAGTCAATCTCTATCGTCGTCGTCGTC 179
Query 201 TTCTGTTAGCTACGAATTTGTAGAAGAGAATCTATCTACACTCTCTCTATTGAGCATCCA 260
|||||||||||||||||| || ||||| ||| |||| |||| |||||| |||||||||||
Sbjct 180 TTCTGTTAGCTACGAATTCGTGGAAGATAATATATCGACACACTCTCTTTTGAGCATCCA 239
Query 261 GTCTCCTCCTCTTAAAGACACGCAAGTTCAGACAAGACACAGTTCGCAAGATAAGCATAA 320
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GTCTCCTCCTCTTAAAGACACGCAGGTTCAGACAAGACACAGTTCGCAAGATAAGCATAA 299
Query 321 TAACCACGACAGAGATGAATTCTATATCAATCTTGGTGTCGCTGTCCGTACACTTCGTGA 380
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TAACCACGACAGAGATGAATTCTATATCAATCTTGGTGTCGCTGTCCGTACGCTTCGTGA 359
Query 381 AGATTTGCCTTTGCTCTTCACTAGAGATCTTAATTACGACATCTACAGGGATGATATAAC 440
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 AGATTTGCCTTTGCTCTTCACTAGAGACCTTAATTACGACATCTACAGGGATGATATAAC 419
Query 441 ATTTGTGGATCCGATGAACACATTCACTGGGATGGACAACTACAAGATT-ATCTTCTGGG 499
|||||||||||||||||||||||| |||||||| || |||||||| ||| ||||||||||
Sbjct 420 ATTTGTGGATCCGATGAACACATTTACTGGGATTGAAAACTACAA-ATTGATCTTCTGGG 478
Query 500 CACTCAGATTTCATGGGAAGATATTGTTCAGAGATATCTCACTTGAGATCTTCAGAGTAT 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 CACTCAGATTTCATGGGAAGATATTGTTCAGAGATATCTCACTTGAGATCTTCAGGGTAT 538
Query 560 GGCAACCATCAGAGAACATGATTCTCATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTC 619
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 GGCAACCATCAGAGAACATGATTCTTATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTC 598
Query 620 CATGGGAAGCTAAAGGAGAGTTTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCA 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CATGGGAAGCTAAAGGAGAGTTTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCA 658
Query 680 AAATCTATGAGCATAAAGTCGATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAATCTATGAGCATAAAGTCGATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTG 718
Query 740 CAGCTTCGGTTTTGGATTTGGTGACTGCTTCCCCTGCAAGCAGTCCTAATCCTACGTTCT 799
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 719 CAGCTTCGGTTTTGGATTTGGTGACTGCTTCCCCTGCAAGTAGTCCCAATCCAACGTTCT 778
Query 800 TTTTCAGTCCTGTGGACTCTTATTCATCTTCATGGGTTAAGTTTTATCAAGCGGTGAGAG 859
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 779 TTTTCGGTCCTGTGGACTCTTATTCATCTTCATGGACTAAGTTTTATCAAGCGGTGAGAG 838
Query 860 GGACATTGGAGACAGAGGATATGTTTGTAACAACAGACTGTTTAGTCACATGCTCATAGT 919
|||||||||||||||||||||| ||||| ||| ||| ||||| |||||||||||||||
Sbjct 839 GGACATTGGAGACAGAGGATATCTTTGTGACA---GACAGTTTACTCACATGCTCATAGT 895
Query 920 GGAAGTAGAGTTGCGATATAGACACTCAAGGTCACACTTCTCAGGTGTATATAGTTTTTA 979
||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 896 GGAAGTAGAGTTGTTATACACATACTCAAGGTCACACTTCTCAGGTGTATATAGTTTT-A 954
Query 980 CATTAAAGGTTTCATATATATGAGTAGATCTGGTTGACTTAATTCTTGGGAAACCTAGAA 1039
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CATTGAAGGTTTTATATATATGAGTAGATCTGGTTGACTTAATTCTTGGGAAACCTAGAA 1014
Query 1040 TTGTTATGTTGTTCCAAAAGCTTTATACAACGTTATCAATACAATGGAGTTTTGTCTTTA 1099
|||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1015 CTGTTATGTTGTTCCAAAAGCTTTATACAACGTAATCAATACAATGAACTTTTGTCTTTA 1074
Query 1100 TGATTATGTGAAACAGTAATATTACTCAGT 1129
||||||||||||||||||||||||||||||
Sbjct 1075 TGATTATGTGAAACAGTAATATTACTCAGT 1104
> Ahg477119 jgi|Araly1|477119|fgenesh2_kg.2__2249__AT1G79510.1
Length=1236
Score = 636 bits (344), Expect = 0.0
Identities = 680/834 (82%), Gaps = 55/834 (7%)
Strand=Plus/Plus
Query 66 AAACAAAGACG-AGCTCTCAAA-TCCAGCAGCAATGGCTTTTCTTCTTTCTAATCTATCA 123
|||| |||| | |||||| ||| ||||||||| ||||| |||||||| | |||| ||
Sbjct 115 AAAC-AAGA-GAAGCTCT-AAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATC--TC- 168
Query 124 TCTCCGTCAATCCATCTTCAAACCGGAAAAT-ACCCAAACCTTAAACCCATTTTCAGTC- 181
||||| || ||| ||||| |||||||||| || |||| |||||||||| ||| |
Sbjct 169 TCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAA-GACAAACCCATTTCCAGCCA 227
Query 182 A-----ATC-TC-T-ATCGTCTTCGTCTTC-T--GTTAGCTACGAATTTGTA-GAAGAGA 229
| ||| || | ||| || |||||||| | ||||||||| |||| | ||||| |
Sbjct 228 AGCTTTATCATCATCATCATCATCGTCTTCTTCCAATAGCTACGAGTTTG-ACGAAGATA 286
Query 230 ATCTATCTACACTCTCTCTATTGAGCATCCA-G-T-CTCCTCCTCTTAAAGACACGCAAG 286
||| ||| |||| ||||| || ||| |||| | | |||||||| || || |||| |
Sbjct 287 CTCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGG 346
Query 287 TTCAGA-CAAGACAC-AGTTCGCAAGATAAGCATAATAACCACGACAGAGATGAATTCTA 344
|| ||| ||| || | ||| |||| |||||| | | | |||| || |||||| |||||
Sbjct 347 TTAAGACCAA-AC-CGAGTGCGCAGGATAAG--T-ACCAGCACGGCAAAGATGACTTCTA 401
Query 345 TATCAATCTTGGTGTCGCTGTCCGTACACTTCGTGAAGATTTGCCT-TTGCTCTTCACTA 403
|||||||| ||| | ||||| ||||| |||||||||||||||||| || |||||||| |
Sbjct 402 CATCAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTT-CTCTTCACCA 460
Query 404 GAGATCTTAATTACGACATCTACAGGGATGATATAACATTTGTGGATCCGATGAACACAT 463
|||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 461 AAGATCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACAT 520
Query 464 TCACTGGGATGGACAACTACAAGATT-ATCTTCTGGGCACTCAGATTTCATGGGAAGATA 522
|| ||||||| ||||| ||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 521 TCTCTGGGATTGACAAGTACAA-ATTGATCTTCTGGGCACTCAGATTTCATGGCAAGAT- 578
Query 523 T-TGTTCAGAGATATCTCACTTGAGATCTTCAGAGTATGGCAACCATCAGAGAACATGAT 581
| | ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 579 TCTCTTCAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGAT 638
Query 582 TCTCATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTCCATGGGAAGCTAAAGGA-GAGT 640
|||||||||||||||||| || ||||| ||| |||||||||||| || ||||| ||||
Sbjct 639 TCTCATCAGGTGGAATCTTAAAGGTGTACCTCCAGTTCCATGGGAGGC-AAAGGGTGAGT 697
Query 641 TTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCAAAATCTATGAGCATAAAGTCG 700
|||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct 698 TTCAGGGTACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCG 757
Query 701 ATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTGCAGCTTCGGTTTTGGATTTGG 760
|||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 758 ATAACTTGGCCTTCAACTTCCCTCACCAGCTCAAACCTGCAACTTCTGTTTTGGATTTGG 817
Query 761 TGACTGCTTCCCCTGCAAGCAGTCCTAATCCTACGTTCTT-TTT--CAGTCCTGTGGACT 817
| ||||||| |||||||||| || ||||| || ||| | ||| | | || |||| |
Sbjct 818 TCACTGCTTGCCCTGCAAGCC--CC-AATCCAACTTTCATGTTTGGC-G-CCA-TGGATT 871
Query 818 CTTATTCATCTTCATGGGTTAAGTTTTATCAA-GCGGTG-AGAGGGACATTGGA 869
| || |||||||| ||| || |||| || ||| || ||| | ||| ||||||||
Sbjct 872 CATACTCATCTTCTTGGATTGAGTTCTA-CAAAGCAGTGCAAAGG-ACATTGGA 923
> Ahg497547 jgi|Araly1|497547|fgenesh2_kg.891__1__AT1G79510.1
Length=885
Score = 623 bits (337), Expect = 9e-178
Identities = 613/740 (83%), Gaps = 44/740 (6%)
Strand=Plus/Plus
Query 66 AAACAAAGACG-AGCTCTCAAA-TCCAGCAGCAATGGCTTTTCTTCTTTCTAATCTATCA 123
|||| |||| | |||||| ||| ||||||||| ||||| |||||||| | |||| ||
Sbjct 115 AAAC-AAGA-GAAGCTCT-AAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATC--TC- 168
Query 124 TCTCCGTCAATCCATCTTCAAACCGGAAAAT-ACCCAAACCTTAAACCCATTTTCAGTC- 181
||||| || ||| ||||| |||||||||| || |||| |||||||||| ||| |
Sbjct 169 TCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAA-GACAAACCCATTTCCAGCCA 227
Query 182 A-----ATC-TC-T-ATCGTCTTCGTCTTC-T--GTTAGCTACGAATTTGTA-GAAGAGA 229
| ||| || | ||| || |||||||| | ||||||||| |||| | ||||| |
Sbjct 228 AGCTTTATCATCATCATCATCATCGTCTTCTTCCAATAGCTACGAGTTTG-ACGAAGATA 286
Query 230 ATCTATCTACACTCTCTCTATTGAGCATCCA-G-T-CTCCTCCTCTTAAAGACACGCAAG 286
||| ||| |||| ||||| || ||| |||| | | |||||||| || || |||| |
Sbjct 287 CTCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGG 346
Query 287 TTCAGA-CAAGACAC-AGTTCGCAAGATAAGCATAATAACCACGACAGAGATGAATTCTA 344
|| ||| ||| || | ||| |||| |||||| | | | |||| || |||||| |||||
Sbjct 347 TTAAGACCAA-AC-CGAGTGCGCAGGATAAG--T-ACCAGCACGGCAAAGATGACTTCTA 401
Query 345 TATCAATCTTGGTGTCGCTGTCCGTACACTTCGTGAAGATTTGCCT-TTGCTCTTCACTA 403
|||||||| ||| | ||||| ||||| |||||||||||||||||| || |||||||| |
Sbjct 402 CATCAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTT-CTCTTCACCA 460
Query 404 GAGATCTTAATTACGACATCTACAGGGATGATATAACATTTGTGGATCCGATGAACACAT 463
|||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 461 AAGATCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACAT 520
Query 464 TCACTGGGATGGACAACTACAAGATT-ATCTTCTGGGCACTCAGATTTCATGGGAAGATA 522
|| ||||||| ||||| ||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 521 TCTCTGGGATTGACAAGTACAA-ATTGATCTTCTGGGCACTCAGATTTCATGGCAAGAT- 578
Query 523 T-TGTTCAGAGATATCTCACTTGAGATCTTCAGAGTATGGCAACCATCAGAGAACATGAT 581
| | ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 579 TCTCTTCAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGAT 638
Query 582 TCTCATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTCCATGGGAAGCTAAAGGA-GAGT 640
|||||||||||||||||| || ||||| |||||||| |||||||| || ||||| ||||
Sbjct 639 TCTCATCAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGC-AAAGGGTGAGT 697
Query 641 TTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCAAAATCTATGAGCATAAAGTCG 700
|||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct 698 TTCAGGGTACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCG 757
Query 701 ATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTGC-AGCTTCGGTTTTGGATTTG 759
|||||||||||||||| |||||||| |||||||||||||| | |||| ||||||||||||
Sbjct 758 ATAACTTGGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCA-CTTCCGTTTTGGATTTG 816
Query 760 GTGACTGCTTCCCCTGCAAG 779
|| ||||||| |||||||||
Sbjct 817 GTCACTGCTTGCCCTGCAAG 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5