BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16400.1 Length=1878 Score E Sequences producing significant alignments: (Bits) Value Ahg312617 jgi|Araly1|312617|fgenesh1_pm.C_scaffold_1001397 2444 0.0 Ahg920545 jgi|Araly1|920545|scaffold_101826.1 2281 0.0 > Ahg312617 jgi|Araly1|312617|fgenesh1_pm.C_scaffold_1001397 Length=1614 Score = 2444 bits (1323), Expect = 0.0 Identities = 1524/1621 (94%), Gaps = 14/1621 (1%) Strand=Plus/Plus Query 73 ATGATGATGAAGATTAGCTTTAACACATGC-TTTCAAATCTTACTAGGATTTATCGTCTT 131 |||||||||| ||| ||||||||||||| | ||||||||| |||||| |||||| |||| Sbjct 1 ATGATGATGATGATGAGCTTTAACACAT-CATTTCAAATCATACTAGTCTTTATCCTCTT 59 Query 132 CATCGCATCAATCACTTTACTAGGTCGAATATTCTCAAGGCCTTCCAAAACCAA-AGACC 190 ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||| Sbjct 60 CATCGCATCAATCACTTTACTAGGTCGAATACTCTCAAGGCCCTCCAAAA-CAAGAGACC 118 Query 191 GGTGTCGCCAGCTTCCTCCT-GGCCGACCAGGATGGCCCATCCTCGGCAATCTACCCGAA 249 | | |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| Sbjct 119 GATCTCGCCAGCTTCCTCCTGGGCC-ACCAGGATGGCTCATCCTCGGCAATCTACCCGAA 177 Query 250 CTAATCATGACTCGTCCTAGGTCCAAATATTTCCACCTTGCCATGAAAGAGCTAAAAACG 309 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 178 CTAATCATGACTCGTCCTAGGTCGAAATATTTCCACCTTGCCATGAAAGAGCTAAAAACA 237 Query 310 GATATCGCATGTTTCAACTTTGCCGGAACCCACACCATCACCATAAACTCCGACGAGATC 369 ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 238 GATATTGCATGTTTCAATTTTGCCGGAACCCACACCATCACCATAACCTCCGACGAGATC 297 Query 370 GCTAGAGAAGCTTTTAGAGAGCGAGACGCAGATTTGGCAGACCGGCCTCAACTTTCCATC 429 ||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||| | Sbjct 298 ACTAAAGAAGCGTTTAGAGAGAGAGACGCCGATTTGGCAGACCGGCCTCAACTTTCCAGC 357 Query 430 GTAGAGTCCATTGGAGACAATTACAAAACAATGGGAACCTCATCGTACGGTGAACATTTC 489 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| Sbjct 358 ATAGAGTCCATTGGAGACAATTACAAATCAATGGGAACCTCCCCGTACGGTGAACAATTC 417 Query 490 ATGAAGATGAAAAAAGTGATCACAACGGAAATTATGTCCGTTAAAACGTTGAATATGTTG 549 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 418 ATGAAGATGAAAAAAGTGATTACAACGGAAATTATGTCCGTTAAAACGTTGAACATGTTG 477 Query 550 GAAGCTGCGAGAACCATCGAAGCGGATAATCTCATTGCTTACATTCACTCGATGTATCAA 609 |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 478 GAAGCTGCAAGAACCATCGAAGCTGATAATTTCATTGCTTACATTCACTCGATGTATCAA 537 Query 610 CGGTCGGAGACGGTCGACGTTAGAGAACTTTCGAGAGTTTATGGTTACGCAGTGACCATG 669 |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 538 CGGTCGGAGACGGTCGACGTTAGAGAGCTCTCGAGGGTTTATGGTTACGCAGTGACCATG 597 Query 670 AGAATGTTGTTTGGAAGGAGACATGTCACGAAAGAAAACATGTTTTCGGATGATGGGAGA 729 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 598 AGGATGTTGTTTGGAAGGAGACATGTCACGAAAGAAAACGTGTTTTCGGATGATGGGAGA 657 Query 730 CTAGGAAAAGCCGAAAAACATCATCTTGAGGTGATTTTCAACACTCTAAACTGTTTGCCA 789 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CTAGGAAAAGCAGAAAAACATCATCTTGAGGTGATTTTCAACACTCTAAACTGTTTGCCA 717 Query 790 GGTTTTAGTCCCGTGGATTACGTGGACCGATGGTTAG-GTGGTTGGAATATTGATGGTGA 848 ||||||||||||||||||||||||| ||||||| | | |||||||||||||||||| | Sbjct 718 AGTTTTAGTCCCGTGGATTACGTGGAAAGATGGTT-GAGAGGTTGGAATATTGATGGTCA 776 Query 849 AGAGGAGA-GAGCGAAAGTGAATGTTAATCTTGTTCGTAGTTACAACAATCCCATAATAG 907 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 777 AGAGGAGATG-GCGAAAGTGAATGTTAATCTTGTTCGTAGTTACAACAATCCCATAATCG 835 Query 908 ACGAGAGGGTCGAAATT-TGGAGGGAAAAAGGTGGTAAGGCTGCTGTGGAAGATTGGCTT 966 |||||||| | | |||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 836 ACGAGAGGATTG-AATTATGGAGGGAAAAAGGTGGTAAGGCTGCTGTTGAAGATTGGCTT 894 Query 967 GATACGTTCATTACGCTAAAAGATCAAAACGGAAACTACTTGGTTACGCCAGACGAAATC 1026 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 895 GATACGTTCATTACGTTAAAAGATCAAAACGGAAACTACTTGGTCACGCCAGACGAAATC 954 Query 1027 AAAGCTCAATGCGTCGAATTTTGTATAGCAGCGATCGATAATCCGGCAAATAACATGGAG 1086 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 955 AAAGCTCAATGCGTTGAATTTTGTATAGCAACGATCGATAATCCGGCAAATAACATGGAG 1014 Query 1087 TGGACACTTGGGGAAATGTTAAAGAACCCGGAGATTCTTAGAAAAGCTCTGAAGGAGTTG 1146 |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1015 TGGACACTTGCGGAAATGTTAAAGAACCCGGAGATTCTCAGAAAAGCTCTGAAAGAGTTA 1074 Query 1147 GATGAAGTAGTTGGAAAAGACAGGCTTGTGCAAGAATCAGACATACGAAATCTAAACTAC 1206 || ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1075 GAGGAAGTAGTTGGAAAAGACAGGCTTGTGCAAGAATCTGACATACCAAATCTAAACTAC 1134 Query 1207 TTAAAAGCTTGTTGCAGAGAAACATTCAGGATTCACCCAAGCGCTCATTATGTCCCACCT 1266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1135 TTAAAAGCTTGTTGCAGAGAAACATTCAGGATTCACCCAAGCGCTCATTATGTCCCTCCT 1194 Query 1267 CATGTTGCCCGTCAAGATACCACCCTTGGGGGTTATTTTATTCCCAAAGGTAGCCACATT 1326 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1195 CATGTGGCCCGTCAAGATACCACCCTCGGGGGTTATTTTATTCCCAAAGGTAGCCACATT 1254 Query 1327 CATGTATGCCGCCCTGGGCTAGGCCGGAACCCTAAAATATGGAAAGATCCATTAGCATAC 1386 ||||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 1255 CATGTATCCCGCCCTGGATTAGGCCGGAACCCTAAAATATGGAAAGATCCATTGGTATAT 1314 Query 1387 GAACCGGAGCGTCACCTCCAAGGAGACGGAATCACAAAAGAGGTTACTCTGGTCGAAACA 1446 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1315 GAACCGGAGCGTCACCTCCAAGGAGAGGGAATCACAAAAGAGGTTACTCTGGTGGAAACA 1374 Query 1447 GAGATGCGTTTTGTCTCATTTAGCACTGGTAGACGTGGCTGCGTCGGTGTCAAAGTCGGG 1506 ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| Sbjct 1375 GAGATGCGTTTTGTCTCGTTTAGCACTGGTCGTCGTGGCTGCGTCGGTGTCAAAGTCGGG 1434 Query 1507 ACAATTATGATGGCTATGATGTTGGCTAGGTTTCTTCAAGGTTTTAACTGGAAACTCCAT 1566 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 1435 ACAATTATGATGGTTATGATGTTGGCTAGGTTTCTTCAAGGGTTTAACTGGAAACTCTAC 1494 Query 1567 CGAGATT-TCGGACCGTTAAGCCTCGAGGAAGATGATGCATCATTGCTTATGGCTAAGCC 1625 | || || | |||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1495 CAAGGTTGT-GGACCGCTAAGCCTCGAGGAAGATGATGCATCATTGCTGATGGCTAAGCC 1553 Query 1626 TCTTCTTTTGTCTGTTGAGCCACGCTTGGCATCAAACCTTTATCCAAAATTCCGTCCTTA 1685 |||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1554 TCTTCTTTTGTCCGTTGAGCCACGCTTGGCACCAAACCTTTATCCAAAATTCCGCCCTTA 1613 Query 1686 A 1686 | Sbjct 1614 A 1614 > Ahg920545 jgi|Araly1|920545|scaffold_101826.1 Length=1660 Score = 2281 bits (1235), Expect = 0.0 Identities = 1478/1597 (93%), Gaps = 10/1597 (1%) Strand=Plus/Plus Query 103 TTTCAAATCTTACTAGGATTTATCGTCTTCATCGCATCAATCACTTTACTAGGTCGAATA 162 ||||||||| |||||| |||||| ||| ||| ||||||||||||||||| ||||||||| Sbjct 54 TTTCAAATCCTACTAGTCTTTATCCTCTCCATGGCATCAATCACTTTACTGGGTCGAATA 113 Query 163 TTCTCAAGGCCTTCCAAAACCAAAGACCGGTGTCGCCAGCTTCCTCCTGGCCGACCAGGA 222 ||||||| || ||||||||||||||| | |||||||||||| ||||||| ||||||| Sbjct 114 CTCTCAAGACCCACCAAAACCAAAGACCAATCTCGCCAGCTTCCGCCTGGCCCACCAGGA 173 Query 223 TGGCCCATCCTCGGCAATCTACCCGAACTAATCATGACTCGTCCTAGGTCCAAATATTTC 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 TGGCCCATCCTCGGCAATCTACCCGAACTAATCATGACTCGTCCTAGGTCCAAATATTTC 233 Query 283 CACCTTGCCATGAAAGAGCTAAAAACGGATATCGCATGTTTCAACTTTGCCGGAACCCAC 342 | |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 234 CGCCTTGCCATGAAAGAGCTAAAAACAGATATTGCATGTTTCAATTTTGCCGGAACCCAC 293 Query 343 ACCATCACCATAAACTCCGACGAGATCGCTAGAGAAGCTTTTAGAGAGCGAGACGCAGAT 402 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| Sbjct 294 ACCATCACCATAAACTCCGACGAGATCGCTAGAGAAGCGTTTAGAGAGAGAGACGCCGAT 353 Query 403 TTGGCAGACCGGCCTCAACTTTCCATCGTAGAGTCCATTGGAGACAATTACAAAACAATG 462 |||||||||||||||||||||| |||| | ||| | || ||||||||||||||| ||||| Sbjct 354 TTGGCAGACCGGCCTCAACTTTTCATCATGGAGACAATCGGAGACAATTACAAATCAATG 413 Query 463 GGAACCTCATCGTACGGTGAACATTTCATGAAGATGAAAAAAGTGATCACAACGGAAATT 522 |||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 414 GGAATCTCGCCGTACGGTGAACAATTCATGAAGATGAAAAGAGTGATCACAACGGAAATT 473 Query 523 ATGTCCGTTAAAACGTTGAATATGTTGGAAGCTGCGAGAACCATCGAAGCGGATAATCTC 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 ATGTCCGTTAAAACGTTGAATATGTTGGAAGCTGCGAGAACCATCGAAGCGGATAATCTC 533 Query 583 ATTGCTTACATTCACTCGATGTATCAACGGTCGGAGACGGTCGACGTTAGAGAACTTTCG 642 ||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 534 ATTGCTTACGTTCACTCCATGTATCAACGGTCCGAGACGGTCGATGTTAGAGAACTCTCG 593 Query 643 AGAGTTTATGGTTACGCAGTGACCATGAGAATGTTGTTTGGAAGGAGACATGTCACGAAA 702 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 AGGGTTTATGGTTACGCAGTGACCATGAGAATGTTGTTTGGAAGGAGACATGTCACGAAA 653 Query 703 GAAAACATGTTTTCGGATGATGGGAGACTAGGAAAAGCCGAAAAACATCATCTTGAGGTG 762 |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 654 GAAAACGTGTTTTCCGATGATGGGAGACTAGGAAAAGCGGAAAAACATCATCTTGAGGTG 713 Query 763 ATTTTCAACACTCTAAACTGTTTGCCAGGTTTTAGTCCCGTGGATTACGTGGACCGATGG 822 |||||||||||||| |||||||| ||| ||||||||| | |||||||||||| |||||| Sbjct 714 ATTTTCAACACTCTTAACTGTTTACCATCTTTTAGTCCAGCGGATTACGTGGAACGATGG 773 Query 823 TT-AGGTGGTTGGAATATTGATGGTGAAGAGGAGAGAGCGAAAGTGAAT-GTTAATC-TT 879 || || ||||||||| |||||||| ||||| |||| | | ||||||| || || | || Sbjct 774 TTGAGA-GGTTGGAATGTTGATGGTCAAGAGAAGAGGGTTACAGTGAATTGT-AA-CATT 830 Query 880 GTTCGTAGTTACAACAATCCCATAATAGACGAGAGGGTCGAAATT-TGGAGGGAAAAAGG 938 |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| Sbjct 831 GTTCGTAGTTACAACAATCCCATAATTGACGAGAGGGTCGAG-TTATGGAGGGAAAAAGG 889 Query 939 TGGTAAGGCTGCTGTGGAAGATTGGCTTGATACGTTCATTACGCTAAAAGATCAAAACGG 998 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 890 TGGTAAGGCTGCTGTTGAAGATTGGCTTGATACGTTCATTACGTTAAAAGATCGAAACGG 949 Query 999 AAACTACTTGGTTACGCCAGACGAAATCAAAGCTCAATGCGTCGAATTTTGTATAGCAGC 1058 ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 950 AAAGTACTTGGTCACGCCAGACGAAATCAAAGCTCAATGCGTTGAATTTTGTATAGCAGC 1009 Query 1059 GATCGATAATCCGGCAAATAACATGGAGTGGACACTTGGGGAAATGTTAAAGAACCCGGA 1118 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1010 GATCGATAATCCGGCAAATAACATGGAGTGGACACTTGCGGAAATGTTAAAGAACCCGGA 1069 Query 1119 GATTCTTAGAAAAGCTCTGAAGGAGTTGGATGAAGTAGTTGGAAAAGACAGGCTTGTGCA 1178 |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1070 GATTCTTAGAAATGCTCTCAAGGAGTTAGATGAAGTAGTTGGAAAAGACAGGCTTGTGCG 1129 Query 1179 AGAATCAGACATACGAAATCTAAACTACTTAAAAGCTTGTTGCAGAGAAACATTCAGGAT 1238 |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1130 AGAATCAGACATACCAAATCTAAACTACTTAAAAGCTTGTTGTAGAGAAACCTTCAGGAT 1189 Query 1239 TCACCCAAGCGCTCATTATGTCCCA-CCTCATGTTGCCCGTCAAGATACCACCCTTGGGG 1297 ||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||| Sbjct 1190 TCACCCAAGTGCTCATTATGTCCCTTCC-CATCTTGCCCGTCAAGATACCACCCTTGGGG 1248 Query 1298 GTTATTTTATTCCCAAAGGTAGCCACATTCATGTATGCCGCCCTGGGCTAGGCCGGAACC 1357 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 1249 GTTATTTTATTCCCAAAGGTAGCCACATTCATGTATCCCGCCCTGGACTAGGCCGGAACC 1308 Query 1358 CTAAAATATGGAAAGATCCATTAGCATACGAACCGGAGCGTCACCTCCAAGGAGACGGAA 1417 |||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||| Sbjct 1309 CTAAAATATGGAAAGATCCATTGGTATACAAACCCGAGCGTCACCTCCAAGGAGACGGAA 1368 Query 1418 TCACAAAAGAGGTTACTCTGGTCGAAACAGAGATGCGTTTTGTCTCATTTAGCACTGGTA 1477 |||||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||| Sbjct 1369 TCACAAAAGAGGTTACTCTGGTGGAAAAAGAGATGCGTTTTGTCTCGTTTAGCACCGGTC 1428 Query 1478 GACGTGGCTGCGTCGGTGTCAAAGTCGGGACAATTATGATGGCTATGATGTTGGCTAGGT 1537 ||||||||||| ||||||| ||||||||||| || ||||||| ||||||||||||||||| Sbjct 1429 GACGTGGCTGCATCGGTGTTAAAGTCGGGACGATCATGATGGTTATGATGTTGGCTAGGT 1488 Query 1538 TTCTTCAAGGTTTTAACTGGAAACTCCATCGAGATTTCGGACCGTTAAGCCTCGAGGAAG 1597 |||||||||| ||||||||||| |||||| |||||| ||||| |||||||||||||||| Sbjct 1489 TTCTTCAAGGGTTTAACTGGAATCTCCATAAAGATTTTGGACCATTAAGCCTCGAGGAAG 1548 Query 1598 ATGATGCATCATTGCTTATGGCTAAGCCTCTTCTTTTGTCTGTTGAGCCACGCTTGGCAT 1657 || ||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| Sbjct 1549 ATAATGCATCATTGCTGATGGCTAAACCTCTTCTCTTGTCCGTTGAGCCACGCTTGGCAC 1608 Query 1658 CAAACCTTTATCCAAAATTCCGTCCTTAAAAACAAGA 1694 |||||||||||||||||||||| |||||| || |||| Sbjct 1609 CAAACCTTTATCCAAAATTCCGCCCTTAAGAAGAAGA 1645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70543133740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5