BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16410.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920545 jgi|Araly1|920545|scaffold_101826.1 2623 0.0
Ahg312617 jgi|Araly1|312617|fgenesh1_pm.C_scaffold_1001397 2228 0.0
> Ahg920545 jgi|Araly1|920545|scaffold_101826.1
Length=1660
Score = 2623 bits (1420), Expect = 0.0
Identities = 1578/1655 (95%), Gaps = 7/1655 (0%)
Strand=Plus/Plus
Query 44 CATACAT-A-CATCATGATGAGCTTTACCACATCATTACCATACCCTTTTCACATCCTAC 101
||||||| | || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 7 CATACATGATGATGATGATGAGCTTTACCACATCATTACCATACCCTTTTCAAATCCTAC 66
Query 102 TAGTCTTTATCCTCTCCATGGCATCAATCACTCTACTGGGTCGAATACTCTCAAGGCCCA 161
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 67 TAGTCTTTATCCTCTCCATGGCATCAATCACTTTACTGGGTCGAATACTCTCAAGACCCA 126
Query 162 CCAAAACCAAAGACCGATCTTGCCAGCTTCCTCCTGGCCCACCAGGATGGCCCATCCTCG 221
||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 127 CCAAAACCAAAGACCAATCTCGCCAGCTTCCGCCTGGCCCACCAGGATGGCCCATCCTCG 186
Query 222 GCAATCTACCCGAACTATTCATGACTCGTCCTAGGTCCAAATATTTCCGCCTTGCCATGA 281
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GCAATCTACCCGAACTAATCATGACTCGTCCTAGGTCCAAATATTTCCGCCTTGCCATGA 246
Query 282 AAGAGCTAAAAACAGATATAGCATGTTTCAACTTTGCCGGCATCCGTGCCATCACCATAA 341
||||||||||||||||||| ||||||||||| |||||||| | || ||||||||||||
Sbjct 247 AAGAGCTAAAAACAGATATTGCATGTTTCAATTTTGCCGGAACCCACACCATCACCATAA 306
Query 342 ACTCCGACGAGATCGCTAGAGAAGCGTTTAGAGAGCGAGACGCAGATTTGGCAGACCGGC 401
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 307 ACTCCGACGAGATCGCTAGAGAAGCGTTTAGAGAGAGAGACGCCGATTTGGCAGACCGGC 366
Query 402 CTCAACTTTTCATCATGGAGACAATCGGAGACAATTACAAATCAATGGGAATTTCACCGT 461
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 367 CTCAACTTTTCATCATGGAGACAATCGGAGACAATTACAAATCAATGGGAATCTCGCCGT 426
Query 462 ACGGTGAACAATTCATGAAGATGAAAAGAGTGATCACAACGGAAATTATGTCCGTTAAGA 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 427 ACGGTGAACAATTCATGAAGATGAAAAGAGTGATCACAACGGAAATTATGTCCGTTAAAA 486
Query 522 CGTTGAAAATGTTGGAGGCTGCAAGAACCATCGAAGCGGATAATCTCATAGCTTACGTTC 581
||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 487 CGTTGAATATGTTGGAAGCTGCGAGAACCATCGAAGCGGATAATCTCATTGCTTACGTTC 546
Query 582 ACTCCATGTATCAACGGTCCGAGACGGTCGATGTTAGAGAGCTCTCGAGGGTTTATGGTT 641
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 ACTCCATGTATCAACGGTCCGAGACGGTCGATGTTAGAGAACTCTCGAGGGTTTATGGTT 606
Query 642 ACGCAGTGACCATGCGAATGTTGTTTGGAAGGAGACATGTTACGAAAGAAAACGTGTTTT 701
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 607 ACGCAGTGACCATGAGAATGTTGTTTGGAAGGAGACATGTCACGAAAGAAAACGTGTTTT 666
Query 702 CTGATGATGGAAGACTAGGAAACGCCGAAAAACATCATCTTGAGGTGATTTTCAACACTC 761
| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 667 CCGATGATGGGAGACTAGGAAAAGCGGAAAAACATCATCTTGAGGTGATTTTCAACACTC 726
Query 762 TTAACTGTTTACCGA-GTTTTAGTCCAGCGGATTACGTGGAACGATGGTTGAGAGGTTGG 820
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TTAACTGTTTACC-ATCTTTTAGTCCAGCGGATTACGTGGAACGATGGTTGAGAGGTTGG 785
Query 821 AATGTTGATGGTCAAGAGAAGAGGGTGACAGAGAACTGTAACATTGTTCGTAGTTACAAC 880
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 786 AATGTTGATGGTCAAGAGAAGAGGGTTACAGTGAATTGTAACATTGTTCGTAGTTACAAC 845
Query 881 AATCCCATAATCGACGAGAGGGTCCAGTTGTGGAGGGAAGAAGGTGGTAAGGCTGCTGTT 940
||||||||||| |||||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 846 AATCCCATAATTGACGAGAGGGTCGAGTTATGGAGGGAAAAAGGTGGTAAGGCTGCTGTT 905
Query 941 GAAGATTGGCTTGATACGTTCATTACCCTAAAAGATCAAAACGGAAAGTACTTGGTCACA 1000
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 906 GAAGATTGGCTTGATACGTTCATTACGTTAAAAGATCGAAACGGAAAGTACTTGGTCACG 965
Query 1001 CCAGACGAAATCAAAGCTCAATGCGTAGAATTTTGTATAGCAGCGATTGATAATCCGGCA 1060
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 966 CCAGACGAAATCAAAGCTCAATGCGTTGAATTTTGTATAGCAGCGATCGATAATCCGGCA 1025
Query 1061 AATAACATGGAGTGGACACTTGGGGAAATGTTAAAGAACCCGGAGATTCTTAGAAAAGCT 1120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1026 AATAACATGGAGTGGACACTTGCGGAAATGTTAAAGAACCCGGAGATTCTTAGAAATGCT 1085
Query 1121 CTGAAGGAGTTGGATGAAGTAGTTGGAAGAGACAGGCTTGTGCAAGAATCAGACATACCA 1180
|| |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1086 CTCAAGGAGTTAGATGAAGTAGTTGGAAAAGACAGGCTTGTGCGAGAATCAGACATACCA 1145
Query 1181 AATCTAAACTACTTAAAAGCTTGTTGTAGAGAAACATTCAGAATTCACCCAAGTGCTCAT 1240
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1146 AATCTAAACTACTTAAAAGCTTGTTGTAGAGAAACCTTCAGGATTCACCCAAGTGCTCAT 1205
Query 1241 TATGTCCCTTCCCATCTTGCGCGTCAAGATACCACCCTTGGGGGTTATTTCATTCCCAAA 1300
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1206 TATGTCCCTTCCCATCTTGCCCGTCAAGATACCACCCTTGGGGGTTATTTTATTCCCAAA 1265
Query 1301 GGTAGCCACATTCATGTATGCCGCCCTGGACTAGGTCGTAACCCTAAAATATGGAAAGAT 1360
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 1266 GGTAGCCACATTCATGTATCCCGCCCTGGACTAGGCCGGAACCCTAAAATATGGAAAGAT 1325
Query 1361 CCATTGGTATACAAACCGGAGCGTCACCTCCAAGGAGACGGAATCACAAAAGAGGTTACT 1420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CCATTGGTATACAAACCCGAGCGTCACCTCCAAGGAGACGGAATCACAAAAGAGGTTACT 1385
Query 1421 CTGGTGGAAACAGAGATGCGTTTTGTCTCGTTTAGCACCGGTCGACGTGGCTGCATCGGT 1480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CTGGTGGAAAAAGAGATGCGTTTTGTCTCGTTTAGCACCGGTCGACGTGGCTGCATCGGT 1445
Query 1481 GTTAAAGTCGGGACGATCATGATGGTTATGTTGTTGGCTAGGTTTCTTCAAGGGTTTAAC 1540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1446 GTTAAAGTCGGGACGATCATGATGGTTATGATGTTGGCTAGGTTTCTTCAAGGGTTTAAC 1505
Query 1541 TGGAAACTCCATCAAGATTTTGGACCGTTAAGCCTCGAGGAAGATGATGCATCATTGCTT 1600
||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1506 TGGAATCTCCATAAAGATTTTGGACCATTAAGCCTCGAGGAAGATAATGCATCATTGCTG 1565
Query 1601 ATGGCTAAACCTCTTCACTTGTCCGTTGAGCCACGCTTGGCACCAAACCTTTATCCAAAG 1660
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 ATGGCTAAACCTCTTCTCTTGTCCGTTGAGCCACGCTTGGCACCAAACCTTTATCCAAAA 1625
Query 1661 TTCCGTCCTTAAGAAGAAGAAAA---CAAGATGGT 1692
||||| ||||||||||||||||| |||||||||
Sbjct 1626 TTCCGCCCTTAAGAAGAAGAAAAAAACAAGATGGT 1660
> Ahg312617 jgi|Araly1|312617|fgenesh1_pm.C_scaffold_1001397
Length=1614
Score = 2228 bits (1206), Expect = 0.0
Identities = 1462/1588 (92%), Gaps = 8/1588 (1%)
Strand=Plus/Plus
Query 89 TTTCACATCCTACTAGTCTTTATCCTCTCCATGGCATCAATCACTCTACTGGGTCGAATA 148
||||| ||| |||||||||||||||||| ||| |||||||||||| |||| |||||||||
Sbjct 31 TTTCAAATCATACTAGTCTTTATCCTCTTCATCGCATCAATCACTTTACTAGGTCGAATA 90
Query 149 CTCTCAAGGCCCACCAAAACCAA-AGACCGATCTTGCCAGCTTCCTCCTGGCCCACCAGG 207
|||||||||||| |||||| ||| |||||||||| |||||||||||||||| ||||||||
Sbjct 91 CTCTCAAGGCCCTCCAAAA-CAAGAGACCGATCTCGCCAGCTTCCTCCTGGGCCACCAGG 149
Query 208 ATGGCCCATCCTCGGCAATCTACCCGAACTATTCATGACTCGTCCTAGGTCCAAATATTT 267
||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 150 ATGGCTCATCCTCGGCAATCTACCCGAACTAATCATGACTCGTCCTAGGTCGAAATATTT 209
Query 268 CCGCCTTGCCATGAAAGAGCTAAAAACAGATATAGCATGTTTCAACTTTGCCGGCATCCG 327
|| |||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||
Sbjct 210 CCACCTTGCCATGAAAGAGCTAAAAACAGATATTGCATGTTTCAATTTTGCCGGAACCCA 269
Query 328 TGCCATCACCATAAACTCCGACGAGATCGCTAGAGAAGCGTTTAGAGAGCGAGACGCAGA 387
|||||||||||| ||||||||||||| ||| |||||||||||||||| ||||||| ||
Sbjct 270 CACCATCACCATAACCTCCGACGAGATCACTAAAGAAGCGTTTAGAGAGAGAGACGCCGA 329
Query 388 TTTGGCAGACCGGCCTCAACTTTTCATCATGGAGACAATCGGAGACAATTACAAATCAAT 447
||||||||||||||||||||||| || ||| ||| | || ||||||||||||||||||||
Sbjct 330 TTTGGCAGACCGGCCTCAACTTTCCAGCATAGAGTCCATTGGAGACAATTACAAATCAAT 389
Query 448 GGGAATTTCACCGTACGGTGAACAATTCATGAAGATGAAAAGAGTGATCACAACGGAAAT 507
||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 390 GGGAACCTCCCCGTACGGTGAACAATTCATGAAGATGAAAAAAGTGATTACAACGGAAAT 449
Query 508 TATGTCCGTTAAGACGTTGAAAATGTTGGAGGCTGCAAGAACCATCGAAGCGGATAATCT 567
|||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||| |
Sbjct 450 TATGTCCGTTAAAACGTTGAACATGTTGGAAGCTGCAAGAACCATCGAAGCTGATAATTT 509
Query 568 CATAGCTTACGTTCACTCCATGTATCAACGGTCCGAGACGGTCGATGTTAGAGAGCTCTC 627
||| |||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 510 CATTGCTTACATTCACTCGATGTATCAACGGTCGGAGACGGTCGACGTTAGAGAGCTCTC 569
Query 628 GAGGGTTTATGGTTACGCAGTGACCATGCGAATGTTGTTTGGAAGGAGACATGTTACGAA 687
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 570 GAGGGTTTATGGTTACGCAGTGACCATGAGGATGTTGTTTGGAAGGAGACATGTCACGAA 629
Query 688 AGAAAACGTGTTTTCTGATGATGGAAGACTAGGAAACGCCGAAAAACATCATCTTGAGGT 747
||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 630 AGAAAACGTGTTTTCGGATGATGGGAGACTAGGAAAAGCAGAAAAACATCATCTTGAGGT 689
Query 748 GATTTTCAACACTCTTAACTGTTTACCGAGTTTTAGTCCAGCGGATTACGTGGAACGATG 807
||||||||||||||| |||||||| || ||||||||||| | ||||||||||||| ||||
Sbjct 690 GATTTTCAACACTCTAAACTGTTTGCCAAGTTTTAGTCCCGTGGATTACGTGGAAAGATG 749
Query 808 GTTGAGAGGTTGGAATGTTGATGGTCAAGAGAAGAGGGTGACAGAGAACTG-TAA-CATT 865
|||||||||||||||| |||||||||||||| ||| || || || ||| || ||| | ||
Sbjct 750 GTTGAGAGGTTGGAATATTGATGGTCAAGAGGAGATGGCGAAAGTGAA-TGTTAATC-TT 807
Query 866 GTTCGTAGTTACAACAATCCCATAATCGACGAGAGGGTCCAGTTGTGGAGGGAAGAAGGT 925
|||||||||||||||||||||||||||||||||||| | | || ||||||||| |||||
Sbjct 808 GTTCGTAGTTACAACAATCCCATAATCGACGAGAGGATTGAATTATGGAGGGAAAAAGGT 867
Query 926 GGTAAGGCTGCTGTTGAAGATTGGCTTGATACGTTCATTACCCTAAAAGATCAAAACGGA 985
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 868 GGTAAGGCTGCTGTTGAAGATTGGCTTGATACGTTCATTACGTTAAAAGATCAAAACGGA 927
Query 986 AAGTACTTGGTCACACCAGACGAAATCAAAGCTCAATGCGTAGAATTTTGTATAGCAGCG 1045
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 928 AACTACTTGGTCACGCCAGACGAAATCAAAGCTCAATGCGTTGAATTTTGTATAGCAACG 987
Query 1046 ATTGATAATCCGGCAAATAACATGGAGTGGACACTTGGGGAAATGTTAAAGAACCCGGAG 1105
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 988 ATCGATAATCCGGCAAATAACATGGAGTGGACACTTGCGGAAATGTTAAAGAACCCGGAG 1047
Query 1106 ATTCTTAGAAAAGCTCTGAAGGAGTTGGATGAAGTAGTTGGAAGAGACAGGCTTGTGCAA 1165
||||| |||||||||||||| ||||| || ||||||||||||| ||||||||||||||||
Sbjct 1048 ATTCTCAGAAAAGCTCTGAAAGAGTTAGAGGAAGTAGTTGGAAAAGACAGGCTTGTGCAA 1107
Query 1166 GAATCAGACATACCAAATCTAAACTACTTAAAAGCTTGTTGTAGAGAAACATTCAGAATT 1225
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1108 GAATCTGACATACCAAATCTAAACTACTTAAAAGCTTGTTGCAGAGAAACATTCAGGATT 1167
Query 1226 CACCCAAGTGCTCATTATGTCCCTTCC-CATCTTGCGCGTCAAGATACCACCCTTGGGGG 1284
|||||||| |||||||||||||| ||| ||| | || ||||||||||||||||| |||||
Sbjct 1168 CACCCAAGCGCTCATTATGTCCC-TCCTCATGTGGCCCGTCAAGATACCACCCTCGGGGG 1226
Query 1285 TTATTTCATTCCCAAAGGTAGCCACATTCATGTATGCCGCCCTGGACTAGGTCGTAACCC 1344
|||||| |||||||||||||||||||||||||||| |||||||||| |||| || |||||
Sbjct 1227 TTATTTTATTCCCAAAGGTAGCCACATTCATGTATCCCGCCCTGGATTAGGCCGGAACCC 1286
Query 1345 TAAAATATGGAAAGATCCATTGGTATACAAACCGGAGCGTCACCTCCAAGGAGACGGAAT 1404
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1287 TAAAATATGGAAAGATCCATTGGTATATGAACCGGAGCGTCACCTCCAAGGAGAGGGAAT 1346
Query 1405 CACAAAAGAGGTTACTCTGGTGGAAACAGAGATGCGTTTTGTCTCGTTTAGCACCGGTCG 1464
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1347 CACAAAAGAGGTTACTCTGGTGGAAACAGAGATGCGTTTTGTCTCGTTTAGCACTGGTCG 1406
Query 1465 ACGTGGCTGCATCGGTGTTAAAGTCGGGACGATCATGATGGTTATGTTGTTGGCTAGGTT 1524
||||||||| ||||||| ||||||||||| || |||||||||||| |||||||||||||
Sbjct 1407 TCGTGGCTGCGTCGGTGTCAAAGTCGGGACAATTATGATGGTTATGATGTTGGCTAGGTT 1466
Query 1525 TCTTCAAGGGTTTAACTGGAAACTCCATCAAGATTTTGGACCGTTAAGCCTCGAGGAAGA 1584
||||||||||||||||||||||||| | |||| || ||||||| ||||||||||||||||
Sbjct 1467 TCTTCAAGGGTTTAACTGGAAACTCTACCAAGGTTGTGGACCGCTAAGCCTCGAGGAAGA 1526
Query 1585 TGATGCATCATTGCTTATGGCTAAACCTCTTCACTTGTCCGTTGAGCCACGCTTGGCACC 1644
||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1527 TGATGCATCATTGCTGATGGCTAAGCCTCTTCTTTTGTCCGTTGAGCCACGCTTGGCACC 1586
Query 1645 AAACCTTTATCCAAAGTTCCGTCCTTAA 1672
||||||||||||||| ||||| ||||||
Sbjct 1587 AAACCTTTATCCAAAATTCCGCCCTTAA 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5