BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16500.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471848 jgi|Araly1|471848|fgenesh2_kg.1__1802__AT1G16500.1 1426 0.0
Ahg316812 jgi|Araly1|316812|fgenesh1_pm.C_scaffold_2001845 156 3e-37
> Ahg471848 jgi|Araly1|471848|fgenesh2_kg.1__1802__AT1G16500.1
Length=970
Score = 1426 bits (772), Expect = 0.0
Identities = 909/974 (93%), Gaps = 14/974 (1%)
Strand=Plus/Plus
Query 18 tctctctctctttctctctGCTTTCTT-GGTATGGCTGCTGACGTCAGCTCTCTCGTACG 76
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTCTCTGC-TTCTTGGGTATGGCTGCTGACGTCAGCTCTCTCGTACG 59
Query 77 GATAC-TGAGTAGGTTCAAGGATGATCGGACGGTTGTAAAAGATTCCACCGGACCAAGAT 135
||||| || |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 GATACTTG-GTAGGTACAAGGATGATCGGACGGTGGTAAAAGATTCCACCGGACCAAGAT 118
Query 136 CCACGGTGGCGCTCATGACACGCGATCTCCTCGGAATCGGCGGTTGTGTGGGTGGAGGAG 195
| |||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 119 CGACGGTGACACTCATGACACGCGATCTCCTCGGAAGCGGCGGTTGTGTGGGAGGAGGAG 178
Query 196 GA-G-G-AGGAGACGAACAGTCGCTGGAGCTTGACCTTGACGTCCAAGTCCCTAACGGAT 252
|| | | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 179 GAGGAGAAGGAGACGAACAGTCGCTGGAACTTGACCTTGACCTCCAAGTCCCTAACGGAT 238
Query 253 GGGAAAAACGTCTCGACTTAAAGTCAGGGAAAGTGTATCTGCAACAACAATGCAATTCAA 312
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 GGGAAAAACGTCTCGACCTAAAGTCAGGGAAAGTGTATCTGCAACAACAACGCAATTCAA 298
Query 313 CGAGCTCGtcatcatcgtctcatcatcatcatcatcatcaCGAAGACCAAACCAACCAAA 372
||||||| || |||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 299 CGAGCTCTTCGTCATCGTCTCATAATCATCATAATCATCACGCAGACCAAACCAACCAAG 358
Query 373 CAGTTCCAAGATTTCAAGATTTGAATGTGCCACCGATTTCCGATAAGTTTCCGGCGAAAC 432
||||||| |||||||||||||||||||| || ||||| ||||| || | |||||||||||
Sbjct 359 CAGTTCCGAGATTTCAAGATTTGAATGTCCCGCCGATCTCCGACAAATCTCCGGCGAAAC 418
Query 433 CATTGTTAAGCCTCTTCGACGATGACGACGACACAAGCCTTGAACTGAAGCTAGttccgt 492
||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 419 CATTGCTAAACCTCTTCGACGACGACGACGACACAAGCCTTGAACTGAAGCTACTTCCGT 478
Query 493 cttctatctctcgtcctcttcctcctcctctgtcttctttttctccaaat-cagtctctc 551
||||| |||||||||||||||| |||||||||||||||| |||||||||| || || |||
Sbjct 479 CTTCTCTCTCTCGTCCTCTTCCACCTCCTCTGTCTTCTTATTCTCCAAATACA-TCGCTC 537
Query 552 tcGTATCTATCGAGTGTTTGCACACTAGATAAGGTGAAATTGGCTTTGGAAAGGGCGGAG 611
|| |||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||
Sbjct 538 TCATATCTATCGAGTGTTTGCACACTAGACAAAGTGAAATCGGCTTTGGAGAGGGCGGAG 597
Query 612 AAAGATACAAAGAAACGCCAATCTCCTGAAGATGACGGCGTTTACGATGGAACCGCTTCT 671
||||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||
Sbjct 598 AAAGACACAAAGAAACGCCCATCGCCTGACGATGACGGTGTTTACGATGGAACCGCTTCT 657
Query 672 G---CCACCGTCGCGGCGTCTCAGGTGGCGGCTGGATGTCCAGGGTGCTTATCGTACGTG 728
| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 GCCACCACCGCCGCGGCGTCTCAAGTGGCGGCTGGATGTCCAGGGTGCTTATCGTACGTG 717
Query 729 TTTGTGGCAAAGAACAATCCGAAATGCCCGAGGTGTCATTCGTTTGTTCCTTTGCCTGCC 788
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTGTGGCGAAGAACAATCCGAAATGCCCGAGGTGTCATTCGTTTGTTCCTTTGCCTGCC 777
Query 789 ATGAAGAAGCCTAAGATTGATCTTAACATTTCGATGTGaaaaaaaCTTTGGGGGATAGAA 848
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 778 ATGAAGAAGCCTAAGATTGATCTCAACATTTCGATTTGAAAAAAACTCTGGGGGATAGAA 837
Query 849 TTGAATGGTTTTATTTTGTAGGTTCGATTTCTGTAAATGATAGATAAAATCAGGGGGTTT 908
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTGAATGGCTTTATTTTGTAGGTTCGATTTCTGTAAATGATAGATAAAATCAGGGGGTTT 897
Query 909 CATTGAAAAGAAATTAAATGCAGAAAGGAAGAGATGGATGTTATTTTGTAAATTGTTATG 968
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CATTGAAAAGAAATTGAATGCAGAAAGGAAGAGATGGATGTTATTTTGTAAATTGTTATG 957
Query 969 TAATGG-ATTTTCT 981
|| ||| |||||||
Sbjct 958 TA-TGGGATTTTCT 970
> Ahg316812 jgi|Araly1|316812|fgenesh1_pm.C_scaffold_2001845
Length=717
Score = 156 bits (84), Expect = 3e-37
Identities = 226/290 (78%), Gaps = 27/290 (9%)
Strand=Plus/Plus
Query 40 TTCTTGGTATGGCTGCTGACGTCAGCTCTCTCGTACGGATACTGAGTAGGTT-CAAGGAT 98
|||||| ||||||||||||||||||||||||||||||| |||| || |||| ||| |||
Sbjct 5 TTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGC-GGTTACAAAGAT 63
Query 99 GATCG-GACGGTTGTAAAAGATTCCACCGGACC-AAGATCCACGGTGGCGCTCATGACAC 156
||||| | |||| || |||||||| ||||| | || |||||||| |||||| ||||| |
Sbjct 64 GATCGAG-CGGTGGTTAAAGATTCTGCCGGAGCGAA-ATCCACGGCGGCGCTGATGACTC 121
Query 157 GCGATCTCCTCGGAATCGGCGGTTGTGTGGGTGGAGGAGGAGGAGGAGACGAACAGTCGC 216
| || || || |||| |||| || ||||||||| ||| | |||
Sbjct 122 GTGACCTTCTTGGAAGCGGC--------------AG-AGGAGGAGG---CGATCGGTCAT 163
Query 217 TGGAGCTTGACCTTGACGTCCAAGTCCCTAACGGATGGGAAAAACGTCTCGACTTAAAGT 276
| ||||||||||| ||| | |||||||| | ||| | ||||||||||||||||| ||||
Sbjct 164 TAGAGCTTGACCTCGACCTTCAAGTCCCCACCGGTTATGAAAAACGTCTCGACTTGAAGT 223
Query 277 CAGGGAAAGTGTATCTGCAACAACAATGCAATTCAACGAGCTCGtcatca 326
|||||||||||||| |||||| | || |||||||||||||| || |||
Sbjct 224 CAGGGAAAGTGTATTTGCAACGA---TGTAATTCAACGAGCTCATCGTCA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5