BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16720.1
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471868 jgi|Araly1|471868|fgenesh2_kg.1__1822__AT1G16720.1 3221 0.0
> Ahg471868 jgi|Araly1|471868|fgenesh2_kg.1__1822__AT1G16720.1
Length=2013
Score = 3221 bits (1744), Expect = 0.0
Identities = 1910/1991 (96%), Gaps = 7/1991 (0%)
Strand=Plus/Plus
Query 60 AGCAGAG-TTC-AAAAATGGTGGGTAGTATTGTTGGCAGTAACATGGCTGCGACTGATGC 117
||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 24 AGCAGAGTTTCAAAAAATGGTGGGTAGTATTGTTGGCAGTAACATGGCGGCCACTGATGC 83
Query 118 GAGGTTTCTAAGCTCGAATTTTGGCAACAGTTTCAGCATCAACACCAGAATTCACAGATT 177
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 84 GAGGTTTCTAAGCTCCAATTTTGGCAACACTTTCAGCATCAACACCAGAATTCACAGATT 143
Query 178 CCATGATCGCTCCCAAATCGTAATCCCTAGGGCTCAATCTTCTTCTTCTCCGTCTCCATC 237
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 144 CCATGATCGCTCCCAAATCGTAATCCCTAGGGCTCAGTCTTCTTCTTCTCCGTCTCCATC 203
Query 238 TCCACCCTCCGACAAGAAGAAGACCAAAACCCGACCCGGAACCATAACCACTAAGGAGAG 297
|||||||||||| || |||||||| || |||||||||||||||| ||| |||||||| ||
Sbjct 204 TCCACCCTCCGATAAAAAGAAGACTAAGACCCGACCCGGAACCACAACTACTAAGGAAAG 263
Query 298 CGAAGAGACGGTTGCGAAGAAGCTCGACGTTGCTCCGCCTTCG--C-CTCAATCACCACC 354
|||||||||||| || ||||||||||||||| ||||||| || | |||||||||||||
Sbjct 264 CGAAGAGACGGTGGCCAAGAAGCTCGACGTTTCTCCGCCGCCGACCGCTCAATCACCACC 323
Query 355 GTCTCCGCCTACACTGAAGTTGGACGATGTGAATCCTGTGGGATTAGGACGACGATCGCG 414
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 324 GTCTCCGCCTACACTGAAATTGGACGATGTGAATCCTGTGGGGTTAGGACGACGATCGCG 383
Query 415 GCAGATCTTCGACGAGGTGTGGCGGAAATTCTCTGGATTAGGTCAGATGTCGAGGACAAC 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 384 GCAGATTTTCGACGAGGTGTGGCGGAAATTCTCTGGATTAGGTCAGATGTCGAGGACCAC 443
Query 475 CCGACCCGATGAGCAAGAGACTCTTGATAGTCTACTCATTAGAGAAGGACCTATGTGTGA 534
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 444 CCGACCCGATGAGCAGGAGACTCTTGATAGTCTTCTCATTAGAGAAGGACCTATGTGTGA 503
Query 535 GTTTGCTGTTCCCGGCGCTCAAAACGTTACCGTTTTAGTCGTCGGAGCTACTAGTAGAAT 594
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 504 GTTCGCTGTTCCCGGCGCTCAAAACGTTACCGTTTTAGTCGTCGGAGCCACTAGCCGAAT 563
Query 595 CGGTCGTATCGTTGTCCGTAAACTCATGCTCCGTGGCTACACCGTCAAGGCACTGGTGAG 654
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TGGCCGTATCGTTGTCCGTAAACTCATGCTCCGTGGCTACACCGTCAAGGCACTGGTGAG 623
Query 655 GAAACAAGATGAGGAAGTGATGAGTATGTTGCCAAGGTCAGTGGATATTGTTGTTGGAGA 714
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 624 GAAACAAGATGAGGAAGTGATGAGTATGTTGCCAAGATCAGTGGATATTGTTGTTGGAGA 683
Query 715 TGTGGGTGAACCGTCAACGCTCAAATCCGCTGTTGAAAGCTGCAGCAAGATCATCTACTG 774
||| || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 684 TGTTGGCGAACCGTCAACACTCAAATCCGCTGTTGAAAGCTGCAACAAGATCATCTACTG 743
Query 775 TGCGACTGCTCGGTCTACGATTACTGCAGACCTTACGCGGGTTGATCACTTGGGTGTTTA 834
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 744 TGCGACTGCTCGGTCTACGATTACTGCAGACCTTACCCGGGTTGATCATTTGGGTGTTTA 803
Query 835 TAACCTCACCAAGGCTTTTCAGGATTACAATAACAGACTAGCGCAATTAAGGGCGGGTAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 804 TAACCTCACCAAGGCTTTTCAGGATTACAATAACAGACTAGCGCAATTAAGAGCGGGTAA 863
Query 895 AAGCAGCAAAAGCAAGCTTCTATTAGCTAAGTTCAAGTCAGCTGAGTCACTTGATGGTTG 954
|||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||
Sbjct 864 AAGCAGCAAAAGCAAGCTTCTAATAGCTAAGTTCAAATCGGCTGAGTCACTCGATGGTTG 923
Query 955 GGAAATTCGTCAAGGAACTTACTTTCAGGACACAACCGCTTCCAAATATGATGGTGGGAT 1014
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 924 GGAAATTCGTCAAGGAACTTACTTTCAAGACACAACTGCTTCCAAATATGATGGTGGGAT 983
Query 1015 GGATGCTAAGTTTGAGTTCACTGAAACTGAGAGAGCTGAGTTTTCAGGTTATGTTTTCAC 1074
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 984 GGATGCTAAGTTCGAGTTCACGGAAACTGAGAGAGCTGAGTTTTCAGGTTATGTTTTCAC 1043
Query 1075 CCGAGGAGGATATGTTGAGTTGTCGAAGAAACTTTCACTTCCATTGGGTACCACTCTTGA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CCGAGGAGGATATGTTGAGTTGTCGAAGAAACTTTCACTTCCATTGGGTACCACTCTTGA 1103
Query 1135 CAGGTACGAAGGCTTAGTTCTTTCTGTTGGTGGGAATGGAAGATCCTATGTTGTAATCCT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CAGGTACGAAGGCTTAGTTCTTTCTGTTGGTGGGAATGGAAGATCCTATGTTGTAATCCT 1163
Query 1195 TGAAGCTGGTCCATCATCAGATATGTCTCAGAGCAAACAGTATTTCGCTAGGATCAGTAC 1254
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1164 TGAAGCTGGTCCATCATCAGATATGTCTCAGAGCAAACAGTATTTCGCAAGGATCAGTAC 1223
Query 1255 CAAAGCAGGGTTTTGTCGGGTAAGGGTGCCATTTTCAGCTTTTCGACCGGTCAACCCAGA 1314
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1224 CAAAGCAGGTTTTTGTCGGGTAAGGGTGCCATTTTCAGCTTTTCGTCCGGTTAACCCAGA 1283
Query 1315 AGATCCACCGCTAGATCCATTTCTTGTTCACACATTGACAATACGCTTTGAGCCTAAAAG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AGATCCACCGCTAGATCCATTTCTTGTTCACACATTGACAATACGCTTTGAGCCTAAAAG 1343
Query 1375 ACAGAGGCCTGTTGATGGACTTGCTGGTGCGCAACAAGATTTGAGAAGTTTTAGCCTTGT 1434
|||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1344 ACAGAGACCTGTTGATGGACTTGCTGCTGCGCAACAAGATCTGAGAAGTTTTAGCCTTGT 1403
Query 1435 ATTTGAGTACATAAAAGCTTTGCCTGCGGGTCAAGAAACAGACTTTATTCTGGTATCGTG 1494
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 ATTCGAGTACATAAAAGCTTTGCCTGCGGGTCAAGAAACAGACTTTATTCTGGTATCGTG 1463
Query 1495 TACTGGTTCGGGAGTAGAAGCCAACAGAAGGGAGCAAGTGTTGAAAGCTAAGAGGGCTGG 1554
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1464 TACTGGTTCGGGAGTAGAACCCAACAGAAGGGAGCAAGTGTTGAAAGCCAAGAGGGCTGG 1523
Query 1555 TGAAGATTCTTTAAGGAGATCAGGCCTTGGATACACAATCATTCGTCCTGGTCCCTTGAA 1614
|||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||||||
Sbjct 1524 TGAAGATTCTTTGAGGAGATCAGGCCTTGGTTACACCATCATTCGTCCCGGCCCCTTGAA 1583
Query 1615 GGAGGAACCAGGCGGGCAACGAGCTCTGATATTTGATCAAGGAAACAGAATTTCTCAGGG 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 GGAGGAACCAGGCGGGCAACGAGCTCTGATATTTGATCAAGGAAACAGAATTTCTCAGGG 1643
Query 1675 CATTAGTTGCGCGGATGTGGCTGATATATGTGTCAAGGCACTGCACGATTCAACCGCCAG 1734
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1644 CATTAGTTGCGCGGATGTGGCTGATATATGTGTCAAGGCACTGCATGATTCAACCGCTAG 1703
Query 1735 AAACAAAAGCTTTGATGTTTGCCATGAATACGTTGCTGAGCAAGGAATAGAACTCTATGA 1794
||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1704 AAACAAAAGTTTTGATGTTTGCCATGAATATGTCGCTGAGCAAGGAATAGAGCTCTATGA 1763
Query 1795 GCTGGTGGCTCATTTGCCAGACAAGGCGAACAACTATCTGACTCCGGCTTTATCTGTACT 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 GCTGGTGGCTCATTTGCCAGACAAGGCGAACAACTATCTGACTCCGGCTTTATCTGTACT 1823
Query 1855 TGAGAAGAACACATGAGAAGAAGAATCATTGATTCCATTTTGTATATTGTACACATCTCA 1914
|||||||||||||||||||| |||||||||||||||||||||| || ||||| |||||||
Sbjct 1824 TGAGAAGAACACATGAGAAGTAGAATCATTGATTCCATTTTGTCTAGTGTACTCATCTCA 1883
Query 1915 AGCTCTGATACGCATTACATGCATATATACATACGTACATGTATAACTTGTACATACAAG 1974
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1884 AGCTCTGATACGCGTTCCATACATATATACATACGTACATGTATAACTTGTACATACAAG 1943
Query 1975 AATCTCTTTGGTCTCTTTATGTCCATTACCATTTATTTCTTATATTCAACT-TAAAATTT 2033
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||
Sbjct 1944 AATCTCTTTGGTCTCTTTATGTCCATTAACATTTATTTCTTATATTCAACTCTAAA-TTT 2002
Query 2034 GTGTGCTAATA 2044
|||||||||||
Sbjct 2003 GTGTGCTAATA 2013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5