BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16810.1 Length=728 Score E Sequences producing significant alignments: (Bits) Value Ahg471877 jgi|Araly1|471877|fgenesh2_kg.1__1831__AT1G16810.2 974 0.0 > Ahg471877 jgi|Araly1|471877|fgenesh2_kg.1__1831__AT1G16810.2 Length=626 Score = 974 bits (527), Expect = 0.0 Identities = 594/627 (95%), Gaps = 2/627 (0%) Strand=Plus/Plus Query 83 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTAAAGCTAAAAGGGAA 142 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTGAAGCTAAAAGGGAA 60 Query 143 GGCTTTGGATGTGAAAGCAGGTGGAGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 202 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 GGCTTTGGATGTGAAAGCAGGTGGCGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 120 Query 203 ACAAGCTCTTAAAATTACTGATCATGAACTCATAGAAGGAGAAAGCACTGAAGCATTGGG 262 |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 121 ACAAGCCCTTAAAATTACTGAACATGAACTCATAGAAGGAGAAAGCACAGAAGCATTGGG 180 Query 263 TAAATTGATTGAAGGAGAAGAAGGAGATGAAGAAA-TGAACAGGAGTGAAAAGGCAAGCG 321 ||||||||||||||||||||||| || |||||||| || ||||||||| ||||| |||| Sbjct 181 TAAATTGATTGAAGGAGAAGAAGAAGGTGAAGAAATTG-GCAGGAGTGATAAGGCGAGCG 239 Query 322 AGGATGCGAAGTTGCAGCAGCAGCTCGATGATGATGATCACTTAACGCCAGCAGAAAGGC 381 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 240 AGGATGCGAAGTTGCAGCAGCAGCACGATGATGATGATCTCTTAACGCCAGCAGAAAGGC 299 Query 382 GATACATAGAGCAGAAACAAAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAGT 441 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 300 GATACATAGAACAGAAACAGAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAAT 359 Query 442 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 419 Query 502 ATATCCCTAAAGTCGGACCTGGTTAATATAATTCTTTCTTGTCTTTGTTTTACTCTGCTT 561 ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 420 ATATCCCTAAAGTCGGACCTGGTTAATATTATACTTTCTTGGCTTTGTTTTACTCTGCTT 479 Query 562 ATCTATTTTGCATCGTTAAACGACTACTTTGGATGTCTGTTATGTTTAGTCCCTTTAACT 621 |||||||| |||| ||||||| ||||||||||||||||| |||| ||||||||| ||||| Sbjct 480 ATCTATTTGGCATTGTTAAACAACTACTTTGGATGTCTGCTATGCTTAGTCCCTATAACT 539 Query 622 TTTGAATGATGTGATCGCAAATCTGTAATGTCAAAAACACATTTTCTTGGAATATTTCTT 681 ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 540 TTTCAATTATGTGATCGCCAATCTGTAATGTCAAAAACACATTTTCTTGGAATAATTCTT 599 Query 682 CTGCATTTCTCAACTTCTTTaaaaaaa 708 ||||||||||||| ||| |||| |||| Sbjct 600 CTGCATTTCTCAATTTCCTTAATAAAA 626 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26800410651 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5