BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16850.1

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334956 jgi|Araly1|334956|fgenesh1_pg.C_scaffold_1001521           647    0.0  


> Ahg334956 jgi|Araly1|334956|fgenesh1_pg.C_scaffold_1001521
Length=444

 Score =  647 bits (350),  Expect = 0.0
 Identities = 388/407 (95%), Gaps = 0/407 (0%)
 Strand=Plus/Plus

Query  34   ATGGCTGAAAAAGTAAAGTCTGGTCAAGTTTTTAACCTATTATGCATATTCTCGATCTTT  93
            |||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||| 
Sbjct  1    ATGGCTGAAAAAGTAAACCCTGGGCAAGTTTTTAACCTACTATGCATATTCTCGATCTTC  60

Query  94   TTCTTCCTCTTTGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG  153
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTCTTCGTCTTCGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG  120

Query  154  CCATCTGAAGATAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTAAAAAT  213
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  121  CCATCTGAAGACAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTACAAAT  180

Query  214  TATTGGGCTAAAGTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCTCCGAAC  273
            |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  181  TATTGGGCCAAACTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCACCGAAC  240

Query  274  ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG  333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG  300

Query  334  GCGACGAGGAGCTTTGAGCATAGCAAAGCGACGGTGGAGGAAGCTGCTAGATCAGCGGCA  393
            ||||| |||||||||||| |||| ||||| || |||||||||||||||||||||||||| 
Sbjct  301  GCGACTAGGAGCTTTGAGAATAGTAAAGCAACAGTGGAGGAAGCTGCTAGATCAGCGGCG  360

Query  394  GAAGTGGTGAGTGATACGGCGGAAGCTGTGAAAGAAAAGGTGAAGAG  440
            |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  361  GAAGTGGTGAGTGATACGGCGGAAACTGTGAAAGAAAAGGTGAAGAG  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27524746074


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5