BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16850.1 Length=747 Score E Sequences producing significant alignments: (Bits) Value Ahg334956 jgi|Araly1|334956|fgenesh1_pg.C_scaffold_1001521 647 0.0 > Ahg334956 jgi|Araly1|334956|fgenesh1_pg.C_scaffold_1001521 Length=444 Score = 647 bits (350), Expect = 0.0 Identities = 388/407 (95%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 34 ATGGCTGAAAAAGTAAAGTCTGGTCAAGTTTTTAACCTATTATGCATATTCTCGATCTTT 93 ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| Sbjct 1 ATGGCTGAAAAAGTAAACCCTGGGCAAGTTTTTAACCTACTATGCATATTCTCGATCTTC 60 Query 94 TTCTTCCTCTTTGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG 153 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCTTCGTCTTCGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG 120 Query 154 CCATCTGAAGATAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTAAAAAT 213 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 CCATCTGAAGACAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTACAAAT 180 Query 214 TATTGGGCTAAAGTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCTCCGAAC 273 |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 TATTGGGCCAAACTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCACCGAAC 240 Query 274 ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG 300 Query 334 GCGACGAGGAGCTTTGAGCATAGCAAAGCGACGGTGGAGGAAGCTGCTAGATCAGCGGCA 393 ||||| |||||||||||| |||| ||||| || |||||||||||||||||||||||||| Sbjct 301 GCGACTAGGAGCTTTGAGAATAGTAAAGCAACAGTGGAGGAAGCTGCTAGATCAGCGGCG 360 Query 394 GAAGTGGTGAGTGATACGGCGGAAGCTGTGAAAGAAAAGGTGAAGAG 440 |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 GAAGTGGTGAGTGATACGGCGGAAACTGTGAAAGAAAAGGTGAAGAG 407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27524746074 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5