BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16890.3
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920595 jgi|Araly1|920595|scaffold_101876.1 797 0.0
Ahg927299 jgi|Araly1|927299|scaffold_202860.1 531 5e-150
> Ahg920595 jgi|Araly1|920595|scaffold_101876.1
Length=567
Score = 797 bits (431), Expect = 0.0
Identities = 547/597 (92%), Gaps = 31/597 (5%)
Strand=Plus/Plus
Query 74 CGATTATTATCAGCCTTTGGTAGCTTCGTTCTCTCTCAAAAACCCTAACTTCTCTGTGA- 132
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 CGATTATCATCAGCCTTTGCCAGCTTCGTTCTCTCTCAAAAACCCTAACTTCTCTGAGAC 60
Query 133 CGATCGAATCCGATAGCGTGCGATAATGGCCAATAGTAATCTTCCCCGACGAATCATCAA 192
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CGATCGAATCCGGTAGCGTGCGATAATGGCCAATAGTAATCTTCCCCGAAGAATCATCAA 120
Query 193 GGAAACTCAACGTCTGCTTAGTGAACCTGGTAATTTCATCACTTCATTCGATCCTTCTCC 252
|| | || || | || | | || | ||| | | || ||| ||||
Sbjct 121 GG--A---AA---CT-C------AA-C--G-----TC-T-GCTT-AGT-GAGCCTGCTCC 153
Query 253 TGGGATAAGTGCGTCTCCATCAGAGGAAAATATGAGATATTTCAATGTTATGATTCTTGG 312
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 154 TGGGATAAGTGCGTCTCCATCAGAGGAAAATATGCGATATTTCAATGTTATGATTCTTGG 213
Query 313 TCCTACTCAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TCCTACTCAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGA 273
Query 373 ATATCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATTTACCATCCTAACATCGA 432
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 274 ATATCCCATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATATACCATCCTAACATCGA 333
Query 433 CAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTACAAAT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 CAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTACAAAT 393
Query 493 ACGAACTGTGCTCTTGAGTATCCAAGCTCTTTTAAGTGCACCAAACCCAGATGATCCTCT 552
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 394 ACGTACTGTGCTCTTGAGTATCCAAGCTCTTCTAAGTGCACCAAATCCAGATGATCCTCT 453
Query 553 GTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAGGCAGAAGCTGTGGAAACAGCTAA 612
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 454 GTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAAGCAGAAGCTGTGGAAACAGCTAA 513
Query 613 GGAATGGACTCGTCTTTACGCAAGTGGTGCTTAAAGAAGACTGCAAATGGAGAAAGA 669
|||||||||||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct 514 GGAATGGACTCGTCTTTACGCAAGTGGTGCTTGA-G--GATTGCAAATGGAGAAAGA 567
> Ahg927299 jgi|Araly1|927299|scaffold_202860.1
Length=525
Score = 531 bits (287), Expect = 5e-150
Identities = 361/398 (91%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 249 CTCCTGGGATAAGTGCGTCTCCATCAGAGGAAAATATGAGATATTTCAATGTTATGATTC 308
|||| || |||||||| |||||||| ||||| |||||| | |||||||||||||||||||
Sbjct 105 CTCCCGGTATAAGTGCCTCTCCATCTGAGGATAATATGCGGTATTTCAATGTTATGATTC 164
Query 309 TTGGTCCTACTCAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTG 368
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TTGGTCCTTCACAATCACCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTG 224
Query 369 AAGAATATCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATTTACCATCCTAACA 428
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 225 AAGAATACCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACA 284
Query 429 TCGACAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTAC 488
| |||||||||||||||||||| ||||| || |||| ||||| ||||| ||||||||||
Sbjct 285 TTGACAAGCTTGGAAGAATCTGTCTTGATATTTTGAAGGACAAATGGAGCCCTGCACTAC 344
Query 489 AAATACGAACTGTGCTCTTGAGTATCCAAGCTCTTTTAAGTGCACCAAACCCAGATGATC 548
|||||||||| |||||||| ||||| ||||||||| | ||||||||||||||||||||||
Sbjct 345 AAATACGAACAGTGCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATC 404
Query 549 CTCTGTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAGGCAGAAGCTGTGGAAACAG 608
| |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 405 CGCTGTCTGAGAACATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGAGACAG 464
Query 609 CTAAGGAATGGACTCGTCTTTACGCAAGTGGTGCTTAA 646
| || |||||||| || |||||||||||||| || |||
Sbjct 465 CCAAAGAATGGACCCGCCTTTACGCAAGTGGCGCATAA 502
Score = 91.6 bits (49), Expect = 1e-17
Identities = 93/112 (83%), Gaps = 11/112 (10%)
Strand=Plus/Plus
Query 109 TCAAAAACCCTAACTTCTCTGTGACGATCGAATCCGATAGCGTGCGATAATGGCCAATAG 168
|||||||||||||| ||| ||| | ||| || ||| | || |||||||||||| ||
Sbjct 1 TCAAAAACCCTAAC-GCTC--TGA-GCTCG-AT-CGACA-AGT--GATAATGGCCAACAG 51
Query 169 TAATCTT-CCCCGACGAATCATCAAGGAAACTCAACGTCTGCTTAGTGAACC 219
|||| || || ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 52 TAAT-TTGCCGCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACC 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5