BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16916.1

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312664 jgi|Araly1|312664|fgenesh1_pm.C_scaffold_1001444           233    7e-61


> Ahg312664 jgi|Araly1|312664|fgenesh1_pm.C_scaffold_1001444
Length=210

 Score =  233 bits (126),  Expect = 7e-61
 Identities = 184/210 (88%), Gaps = 12/210 (6%)
 Strand=Plus/Plus

Query  66   ATGATGGAGGAAGGACCACCAGCTCCAAAGATGCTTCGAATGGTCTACTTCGTCGGCGCC  125
            ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  1    ATGATCGAAGAAGGTCCACCAGCTCCGAAGATGCTTCGGATGGTCTACTTCGTCGGCGCC  60

Query  126  GGATTTCTATGTACATTCGCGATCAATAAGTGGCGTGAGATGGAGAGAAACTCGCTTCTG  185
            |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||
Sbjct  61   GGATTTCTATGTACTTTCGCGATCAATAAATGGCGTGAGATGGAGAGAAACTCGATTCTG  120

Query  186  AAACAGGAGCAGGAGAAGAATCAACAA---GGAGATGTTGGTTTATTGCCT-AGA-G---  237
            |||||||||||||||||||||||||||   |||||||  | |||||||| | | | |   
Sbjct  121  AAACAGGAGCAGGAGAAGAATCAACAACATGGAGATGCAGCTTTATTGCATCAAACGCCT  180

Query  238  --A--TTCGGTTCAGAAAGCTATGAAATGA  263
              |  |||| ||||||||||||||||||||
Sbjct  181  CCAAATTCGATTCAGAAAGCTATGAAATGA  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16826614749


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5