BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17050.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494049 jgi|Araly1|494049|fgenesh2_kg.7__3482__AT1G17050.1 2388 0.0
Ahg920610 jgi|Araly1|920610|scaffold_101891.1 1539 0.0
Ahg911507 jgi|Araly1|911507|Al_scaffold_0001_1761 1507 0.0
Ahg927264 jgi|Araly1|927264|scaffold_202825.1 977 0.0
> Ahg494049 jgi|Araly1|494049|fgenesh2_kg.7__3482__AT1G17050.1
Length=1561
Score = 2388 bits (1293), Expect = 0.0
Identities = 1479/1565 (95%), Gaps = 28/1565 (2%)
Strand=Plus/Plus
Query 1 ttttttattttttatttttCTGAAAATTTGCCATACACACACCCAATCTCTCTCTCGTCA 60
||||||||||||||| |||| |||||||| ||||||||||| |||| |||| |||||||
Sbjct 1 TTTTTTATTTTTTATATTTCCGAAAATTTTCCATACACACATCCAA--TCTCGCTCGTCA 58
Query 61 GCCaaaaagaaaaaaaCTTAACATTGGACTCTCAGTTTCCGAAGATTCTTCTCTTTGGAC 120
| | | ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 59 G-C--------ACAAA-TTAACATTGGACTCTCAGTTTCCGAAGATTCTTCCCTTTGGAC 108
Query 121 TCTCAGTTTCTGAAACTTATTATTAGCCGTC-tttttttGG--TTTGGGTTTGCCTAAAA 177
||| |||||| ||||||||||| | ||||| ||||||||| ||||||||||| |||||
Sbjct 109 TCTTAGTTTCCGAAACTTATTA--A-CCGTCTTTTTTTTGGTTTTTGGGTTTGCATAAAA 165
Query 178 GTTGTCGTCACTTGTGGATTTTGGTCTGAGAAATGATGATGTCATGTCGGAATATAGACT 237
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 166 GTTGTCGTCACTTGTGGATTTT-GTCTGAGAAATGATGATGTCATGTCGGAATATAGACT 224
Query 238 TGGGTACGAGTGTTCTTGATCATTCTTGTAGCTCTTCTTCAACAAGTCGTCGATTCTTGT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TGGGTACGAGTGTTCTTGATCATTCTTGTAGCTCTTCTTCAACAAGTCGTCGATTCTTGT 284
Query 298 TTGGCAATTCTTCGAAGACCGTTTGTATGATTGGTGGCAGAAGCTGTGTTGGAAATTTGG 357
|||| |||| ||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 285 TTGGGAATTGTTCCAAGAATGTTTGTATGATTGGTGGCAGAAGCTGTGCTGGAAATTTGG 344
Query 358 TATTTCTCCGGCGAGA-TTTGGCTACTTGCAGAGCTGTTCCGGCTAAATCCAAGGAGAAT 416
| |||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct 345 TCTTTCTCCGGCGAGATTTTGG-TACTTGTAGAGCGGTTCCGGCTAAATCCAAGGAGAAT 403
Query 417 TCTCTGGTCAACGGTATTGGTCAAGATCAAACAGTGATGCTCAATCTGAGGCAAGAGTCA 476
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 404 TCTCTGGTCAATGGTATTGGTCAAGATAAAACAGTGATGCTCAATCTGAGGCAAGAGTCA 463
Query 477 CGAAAGCCAATATCTTTGGAAACTCTGTTTGAGGTCGTAGCTGATGATTTGCAGAGGTTG 536
| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 464 CCAAAGCCGATATCTTTGGAAAATCTGTTTGAGGTAGTAGCTGATGATTTGCAGAGGTTG 523
Query 537 AACGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AACGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAG 583
Query 597 CAAATCTTCAGCGCTGGTGGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA 656
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CAAATCTTCAGTGCTGGTGGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA 643
Query 657 GCCACTGCGGAATTAGCAGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAG 716
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GCCACTGCGGAATTAGCTGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAG 703
Query 717 ATCATTGAGATGATTCACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATCATTGAGATGATTCACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGAT 763
Query 777 ATGCGAAGAGGAAGGGAAACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCT 836
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 764 ATGCGAAGAGGAAAAGAAACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCT 823
Query 837 GGGGATTTCATGTTTGCTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTC 896
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 824 GGAGATTTCATGTTTGCTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTC 883
Query 897 ATTAAGCTCATAAGTCAGGTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCG 956
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 884 ATTAAGCTCATAAGTCAGGTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCA 943
Query 957 AGTTTATTCGATTGTGATGTCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACA 1016
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 944 AGTTTATTCGATTGTGATGTCGAGCTTGATGACTACTTGCTAAAGAGTTACTACAAGACA 1003
Query 1017 GCTTCATTAGTAGCTGCAAGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCAAG 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1004 GCTTCATTAGTAGCTGCAAGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGCGAG 1063
Query 1077 GTCGCAGAGCAAATGTATCAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAGTAGTTGAT 1136
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1064 GTCGCAGAGCAAATGTATCAGTTCGGAAAGAATCTCGGTTTATCTTTTCAAGTAGTTGAT 1123
Query 1137 GACATTCTGGACTTCACTCAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTA 1196
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||
Sbjct 1124 GACATTCTGGACTTCACTCAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTA 1183
Query 1197 GCCAAAGGTAACATAACGGCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGA 1256
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1184 GCCAAAGGTAACATAACAGCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGA 1243
Query 1257 GAGATCATTGAGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GAGATCATTGAGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTT 1303
Query 1317 AGAAATCGCGGTGGGATCAAGAAAGCTCAAGAATTAGCAAAGGAGAAAGCTGAACTTGCG 1376
||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||
Sbjct 1304 AGAAATCGCGGTGGGATCAAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTGCG 1363
Query 1377 TTAAAGAATTTGAATTGTCTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTA 1436
||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1364 TTAAAGAATCTGAATTGTCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTG 1423
Query 1437 ATGTTTAATCTTGAAAGGATTGATTAGTTTCAAAGGGTATTTGGCAGAGGAAACTGTAAC 1496
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1424 ATGTTTAATCTTGAAAGGATTGATTAGCTTCAAAGGGTATTTGGCAGAGGAAACTGTAAC 1483
Query 1497 AACACTCTTTACTTGTT-CAAAACTTCAAACACAGAtttttttttttACTGTATGTCATA 1555
| | |||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
Sbjct 1484 A-C--TCTTTACTTGTTTCAAA-CTTCAAACACAGATTTTTTTTT--ACTGTATGTCACA 1537
Query 1556 ATGGA 1560
| |||
Sbjct 1538 AAGGA 1542
> Ahg920610 jgi|Araly1|920610|scaffold_101891.1
Length=2639
Score = 1539 bits (833), Expect = 0.0
Identities = 897/929 (97%), Gaps = 0/929 (0%)
Strand=Plus/Plus
Query 555 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGCGCTGGT 614
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1711 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCGGCTGAGCAAATCTTCAGTGCTGGT 1770
Query 615 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGAGCCACTGCGGAATTAGCA 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGAGCCACTGCGGAATTAGCT 1830
Query 675 GGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAGATCATTGAGATGATTCAC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAGATCATTGAGATGATTCAC 1890
Query 735 ACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAGGGAA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1891 ACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAGAA 1950
Query 795 ACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCTGGGGATTTCATGTTTGCT 854
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1951 ACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTGCT 2010
Query 855 CAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTCATTAAGCTCATAAGTCAG 914
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2011 CAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTCAG 2070
Query 915 GTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCGAGTTTATTCGATTGTGAT 974
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2071 GTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTGAT 2130
Query 975 GTCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCA 1034
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 GTCGAGCTTGATGACTACTTGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCA 2190
Query 1035 AGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCAAGGTCGCAGAGCAAATGTAT 1094
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2191 AGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGCGAGGTCGCAGAGCAAATGTAT 2250
Query 1095 CAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAGTAGTTGATGACATTCTGGACTTCACT 1154
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 CAGTTCGGAAAGAATCTCGGTTTATCTTTTCAAGTAGTTGATGACATTCTGGACTTCACT 2310
Query 1155 CAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTAGCCAAAGGTAACATAACG 1214
|| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 2311 CAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTAACATAACA 2370
Query 1215 GCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGAGAGATCATTGAGTCTGAG 1274
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2371 GCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTGAGTCTGAG 2430
Query 1275 TTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 TTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATC 2490
Query 1335 AAGAAAGCTCAAGAATTAGCAAAGGAGAAAGCTGAACTTGCGTTAAAGAATTTGAATTGT 1394
||||||||||||||||| || |||||||||| ||| ||||||||||||||| ||||||||
Sbjct 2491 AAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTGCGTTAAAGAATCTGAATTGT 2550
Query 1395 CTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTAATGTTTAATCTTGAAAGG 1454
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2551 CTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTTAATCTTGAAAGG 2610
Query 1455 ATTGATTAGTTTCAAAGGGTATTTGGCAG 1483
||||||||| |||||||||||||||||||
Sbjct 2611 ATTGATTAGCTTCAAAGGGTATTTGGCAG 2639
> Ahg911507 jgi|Araly1|911507|Al_scaffold_0001_1761
Length=909
Score = 1507 bits (816), Expect = 0.0
Identities = 878/909 (97%), Gaps = 0/909 (0%)
Strand=Plus/Plus
Query 555 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGCGCTGGT 614
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCGGCTGAGCAAATCTTCAGTGCTGGT 60
Query 615 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGAGCCACTGCGGAATTAGCA 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGAGCCACTGCGGAATTAGCT 120
Query 675 GGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAGATCATTGAGATGATTCAC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAGATCATTGAGATGATTCAC 180
Query 735 ACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAGGGAA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAGAA 240
Query 795 ACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCTGGGGATTTCATGTTTGCT 854
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 ACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTGCT 300
Query 855 CAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTCATTAAGCTCATAAGTCAG 914
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTCAG 360
Query 915 GTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCGAGTTTATTCGATTGTGAT 974
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTGAT 420
Query 975 GTCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCA 1034
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCGAGCTTGATGACTACTTGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCA 480
Query 1035 AGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCAAGGTCGCAGAGCAAATGTAT 1094
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 AGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGCGAGGTCGCAGAGCAAATGTAT 540
Query 1095 CAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAGTAGTTGATGACATTCTGGACTTCACT 1154
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGTTCGGAAAGAATCTCGGTTTATCTTTTCAAGTAGTTGATGACATTCTGGACTTCACT 600
Query 1155 CAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTAGCCAAAGGTAACATAACG 1214
|| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 601 CAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTAACATAACA 660
Query 1215 GCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGAGAGATCATTGAGTCTGAG 1274
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 GCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTGAGTCTGAG 720
Query 1275 TTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATC 780
Query 1335 AAGAAAGCTCAAGAATTAGCAAAGGAGAAAGCTGAACTTGCGTTAAAGAATTTGAATTGT 1394
||||||||||||||||| || |||||||||| ||| ||||||||||||||| ||||||||
Sbjct 781 AAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTGCGTTAAAGAATCTGAATTGT 840
Query 1395 CTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTAATGTTTAATCTTGAAAGG 1454
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 CTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTTAATCTTGAAAGG 900
Query 1455 ATTGATTAG 1463
|||||||||
Sbjct 901 ATTGATTAG 909
> Ahg927264 jgi|Araly1|927264|scaffold_202825.1
Length=1261
Score = 977 bits (529), Expect = 0.0
Identities = 916/1101 (83%), Gaps = 33/1101 (3%)
Strand=Plus/Plus
Query 383 TTGCAGAGCTGTTCCGGCTAAATCCAAGGAGAAT-TCTCTGGTCAACGGTATTGGTCAAG 441
||||| ||| || ||| | ||||| |||||| || ||| || |||| |||||||||||||
Sbjct 161 TTGCAAAGCGGTACCGACGAAATCAAAGGAG-ATCTCTTTGCTCAATGGTATTGGTCAAG 219
Query 442 ATCAAACAGTGA-TGCTCAATCTGAGGCAAGAGTCACGAA-AGCCAATATCTTTGG-AAA 498
||||||||||| | | || ||||||| ||||| || |||| || || |||| ||
Sbjct 220 CTCAAACAGTGACT-TTTGATTTGAGGCATGAGTC-TAAACAGCCTATTTCGTTGGTCAA 277
Query 499 CTCTGTTTGAGGTCGTAGCTGATGATTTGCAGAGGTTGAACGACAATCTTTTATCGATTG 558
|||||||||| | |||||| ||||| |||||| ||||| |||||||||||||||||||
Sbjct 278 -TCTGTTTGAGCTAGTAGCTAATGATCTGCAGACTTTGAATGACAATCTTTTATCGATTG 336
Query 559 TTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGCGCTGGTGGCA 618
|||||||||||||||||||| |||||||||| ||||||||||| ||| | |||||||| |
Sbjct 337 TTGGTGCAGAAAATCCGGTTCTGATATCTGCCGCTGAGCAAATTTTCGGAGCTGGTGGTA 396
Query 619 AGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGCAGGC 677
| || ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 397 AAAGAATGAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGCAGGC 455
Query 678 TTAAAGGAACTTACAG-TAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTCACA 735
||||||||||||||| | ||||| |||||||| || ||||||||| |||||||| ||||
Sbjct 456 TTAAAGGAACTTACAACT-GAACACCGGCGTTT-GGCTGAGATCATCGAGATGATACACA 513
Query 736 CCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAGGGAAA 795
| ||||| ||||||||||| || ||||| || || ||||||||||||||||||| |||||
Sbjct 514 CTGCAAGCTTGATACACGACGACGTGTTGGATGAGAGTGATATGCGAAGAGGAAAGGAAA 573
Query 796 CGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCTGGGGATTTCATGTTTGCTC 855
| ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct 574 CTGTTCACGAGCTTTTCGGCACAAGAGTAGCAGTGTTAGCTGGAGATTTCATGTTTGCTC 633
Query 856 AAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTCATTAAGCTCATAAGTCAGG 915
|||| ||||||||||||||||||||||| || ||| |||| ||||||||||| |||||||
Sbjct 634 AAGCGTCATGGTACTTAGCAAATCTCGAGAATCTTCAAGTTATTAAGCTCATCAGTCAGG 693
Query 916 TGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCGAGTTTATTCGATTGTGATG 975
||||||| || ||||||||||| ||||||||||| ||||| || ||||| || || ||
Sbjct 694 TGATCAAGGACTTTGCAAGCGGAGAGATAAAGCAGGCATCCAGCTTATTTGACTGCGACA 753
Query 976 -TCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCA 1034
| ||||| || |||||| | || ||||||| |||||||||||| || ||||| ||||||
Sbjct 754 CT-AAGCTCGACGACTACTTACTCAAGAGTTTCTACAAGACAGCCTCTTTAGTGGCTGCA 812
Query 1035 AGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCA-AGGTCG-CAGAGCAAATGT 1092
|||||||||||||| || |||||||| | ||| || | | | || | ||||||||||||
Sbjct 813 AGCACCAAAGGAGCTGCCATTTTCAGCAGAGTTGAGA-CTGATGT-GACAGAGCAAATGT 870
Query 1093 ATCAGTTCGGGAAGAATCTCGGTTTATCTTTTCA-AGTAGTTGATGACATTCTGGACTTC 1151
|| |||| ||||||||||||||| | |||||||| | |||| ||||| ||| |||| |||
Sbjct 871 ATGAGTTTGGGAAGAATCTCGGTCTCTCTTTTCAGA-TAGTCGATGATATTTTGGATTTC 929
Query 1152 ACTCAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTAGCCAAAGGTAACATA 1211
|||||||| ||||||||| | || ||||| |||| | |||| | || ||||||||| ||
Sbjct 930 ACTCAGTCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGACTTGGCTAAAGGTAACTTA 989
Query 1212 ACGGCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGAGAGATCATTGAGTCT 1271
|| || || ||||| ||||| || ||||| ||| ||||||| ||||||||||||||||||
Sbjct 990 ACCGCACCCGTGATTTTCGCTCTGGAGAAAGAGGCAAGGCTGAGAGAGATCATTGAGTCT 1049
Query 1272 GAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGA-AATCGCGGTGG 1330
|| ||||||||| | || || || |||||||| |||||||| || ||| || |||| ||
Sbjct 1050 GAATTTTGTGAGGCGGGTTCTCTGGAAGAAGCAATTGAAATGGTGAGAGAAG-GCGG-GG 1107
Query 1331 GA-TCAAGAAAGCTCAAGAATTAGCAA-AGGAGAAAGCTGA--ACTTGCGTTAAAGAATT 1386
|| ||| || ||| |||||||| || | || |||||||||| || ||| ||||||||
Sbjct 1108 GAATCAGGAGAGCACAAGAATTGGCTAGAG-AGAAAGCTGATGAC--GCGATAAAGAATC 1164
Query 1387 TGAATTGTCTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTAATGTTTAATC 1446
|| | || || ||| | |||| |||| | || ||||| || || ||||| |||| |||||
Sbjct 1165 TGCAGTGCCTGCCTCGAAGTGCTTTCCGGTCAGCTCTAGAAGAAATGGTGATGTATAATC 1224
Query 1447 TTGAAAGGATTGATTAG-TTT 1466
| ||||| ||||||||| |||
Sbjct 1225 TCGAAAGAATTGATTAGCTTT 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5