BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17170.1 Length=855 Score E Sequences producing significant alignments: (Bits) Value Ahg471920 jgi|Araly1|471920|fgenesh2_kg.1__1874__AT1G17170.1 1085 0.0 Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778 449 1e-125 Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 263 2e-69 Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1 261 6e-69 > Ahg471920 jgi|Araly1|471920|fgenesh2_kg.1__1874__AT1G17170.1 Length=748 Score = 1085 bits (587), Expect = 0.0 Identities = 704/759 (93%), Gaps = 13/759 (2%) Strand=Plus/Plus Query 30 GAGCTTAATCAAGAGCAACAATGGCAGATGAGGTGATTCTTCTGGATTTCTGGGCGAGTA 89 |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 1 GAGCTTAATCAAGAACAACAATGGCAGAGGAGGTGGTTCTTCTGGATTTCTGGGCAAGTA 60 Query 90 TGTTTGGGATGAGGACAAGAATTGCTCTGGCGGAGAAAAGAGTTAAGTACGATCACAGAG 149 ||||||| ||||| | ||||||||||||| ||||||||||||| || |||||| |||||| Sbjct 61 TGTTTGGCATGAGAATAAGAATTGCTCTGTCGGAGAAAAGAGTCAAATACGATTACAGAG 120 Query 150 AAGAAGATCTATGGAATAAGAGCTCCTTGCTCCTCGAGATGAACCCGGTTCATAAGAAAA 209 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAGAAGATTTATGGAATAAGAGCTCCTTGCTCCTCGAGATGAACCCGGTTCATAAGAAAA 180 Query 210 TTCCGGTTCTCATCCACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCGAGTACA 269 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCCCGGTTCTTATCCACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCGAGTACA 240 Query 270 TAGACGAGACTTGGCCCGACAATAACCCTCTCCTTCCCTCCGATCCTTACAAGAGAGCTC 329 |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| Sbjct 241 TAGACGAGACTTGGCCCGACAAAAACTCTCTCCTTCCCTCTGATCCTTACAAGAGAGCTC 300 Query 330 ATGCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGCGAGAAGGATTT 389 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 ATGCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGCGAGGAGGATTT 360 Query 390 GGGCGGTCAAAGGTGAGGAGCAAGAAGCAGCCAAGGAGTTAATCGAAATACTCAAGACGC 449 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 361 GGGCGGCCAAAGGTGAGGAGCAAGAAGCAGCCAAGGAGTTCATCGAAATACTCAAGACGC 420 Query 450 TAGAGTCTGAGCTTGGAGACAAAAAGTACTTTGGAGACGAAACTTTTGGGTATGTAGATA 509 ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 421 TAGAGTCCGAGCTTGGAGACAAAAAATACTTTGGAGACGAAACTTTCGGGTATGTGGATA 480 Query 510 TAGCTCTCATTGGATTCCATAGCTGGTTTGCAGTGTACGAGAAGTTTGGAAATGTCAGTA 569 ||||||||||||||||| |||||||||||| ||| |||||||||||||| ||| |||||| Sbjct 481 TAGCTCTCATTGGATTCTATAGCTGGTTTGGAGTATACGAGAAGTTTGGGAATATCAGTA 540 Query 570 TCGAATCTGAGTGTTCGAAATTGGTTGCGTGGGCCAAAAGGTGTTTGGAGAGAGAGAGCG 629 ||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| | Sbjct 541 TCGAATCAGAGTGTTCGAAATTGATTGCGTGGGCCAAACGGTGTTTGGATAGAGAGAGTG 600 Query 630 TCGCTAAAGCCCTGCCTGAGTCAGAGAAGGTCATTACATTCATTTCCGAAC-GTAGGAAG 688 ||||||||||| |||| ||||||||||||||| ||| ||| ||||||| | |||||||| Sbjct 601 TCGCTAAAGCCTTGCCAGAGTCAGAGAAGGTCGCTACGTTCGTTTCCGA-CTGTAGGAAG 659 Query 689 AAACTTGGGTTGGAGTAAATCTCTACTTTGTTATGTTGATCTGTTGTTGCTTTGTTCTAT 748 |||||||||||||||||||||||| ||| || ||| || ||| ||||||||||| Sbjct 660 AAACTTGGGTTGGAGTAAATCTCT-CTTC-TT-TGTA-AT--GTT----CTTTGTTCTAT 709 Query 749 TTTCTTTGAGGTCTATGTAATGCATAATAATACCAATTT 787 ||||||||||||||||||| ||||||||||||||||||| Sbjct 710 TTTCTTTGAGGTCTATGTA-TGCATAATAATACCAATTT 747 > Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778 Length=594 Score = 449 bits (243), Expect = 1e-125 Identities = 484/596 (81%), Gaps = 33/596 (6%) Strand=Plus/Plus Query 50 ATGGCAGATGAGGTGATTCTTCTGGATTTCTGGGCGAGTATGTTTGGGATGAGGACAAGA 109 |||||||| |||||||||||||| ||||||||| ||||||||||||| |||||||| || Sbjct 1 ATGGCAGACGAGGTGATTCTTCTTGATTTCTGGCCGAGTATGTTTGGAATGAGGACGAGG 60 Query 110 ATTGCTCTGGCGGAGAAAAGA-GTTA-AGTACGATCACAGAGAAGAAGATCTATGGAATA 167 |||||||| | ||||||| | || | | | |||| |||||||| ||||||||||||| Sbjct 61 ATTGCTCTAGAAGAGAAAA-ATGTCATA-TTCGATTACAGAGAACAAGATCTATGGAA-C 117 Query 168 AG-AGCTCC--TTGCTCCTCGAGATGAACCCGGTTCATAAGAAAATTCCGGTTCTCATCC 224 || ||| || || |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 118 AGAAGC-CCGATT-CTCCTCGAGATGAATCCGGTTCATAAGAAAATACCGGTTCTCATCC 175 Query 225 ACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCG-AGTACATAGACG-AGACTTG 282 |||||||||||||||| |||||||| ||||| || || | | ||||| |||| || ||| Sbjct 176 ACAATGGTAAACCGGTCTGTGAATCACTCATCCAAAT-GCAATACATCGACGAAG-TTTG 233 Query 283 GCCCGA-CAATAA-CCCTCTCCTTCCCTCCGATCCTTA-CAAGAGAGCTCATGCCAAATT 339 | || | ||| || ||| || ||||| || || ||||| ||| ||||||||||||||||| Sbjct 234 G-CCTAGCAA-AACCCCGCTTCTTCCTTCTGACCCTTACCAA-AGAGCTCATGCCAAATT 290 Query 340 CTGGGCCGACTTCATCGACAAAAAGGTGAATG-TTACGGCGAGAAGGATTTGGGCG-GTC 397 |||| || ||||||||||| |||||| ||| || | ||||| |||||||| | | | Sbjct 291 TTGGGGAGATTTCATCGACAAGAAGGTGTATGCTT-CAGCGAGGTTGATTTGGG-GAG-C 347 Query 398 -AAAGGTGAGGAGCAAGAAGC--AG-CCAAGGAGTTAATCGAAATACTCAAGACGCTAGA 453 ||||| || ||||| || || | |||||||| ||||| ||||||||||| ||||| Sbjct 348 GAAAGGCGAAGAGCATGAGGCGGGGAAGAAGGAGTTCATCGAGATACTCAAGACACTAGA 407 Query 454 GTCTGAGCTTGGAGACAAAAAGTACTTTGGAGACGAAACTTTTGGGTATGTAGATATAGC 513 |||||||||||||||||||| |||||||||| ||||| || || ||||| ||||| || Sbjct 408 GTCTGAGCTTGGAGACAAAACTTACTTTGGAGGGGAAACATTCGGTTATGTTGATATTGC 467 Query 514 TCTCATTGGATTCCATAGCTGGTTTGCAGTGTACGAGAAGTTTGGAAATGTCAGTATCGA 573 |||||||||||| | |||||||||| || || ||||||||||| ||| ||| || || Sbjct 468 TCTCATTGGATTTTACAGCTGGTTTGAAGCATATGAGAAGTTTGGGAATTTCAACATTGA 527 Query 574 ATCTG-AGTGTTCGAAAT-TGGTTGCGTGGGCCAAAAGGTGTTTGGAGAGAGAGAG 627 | || ||||| | ||| || |||| ||||| ||||| ||| || |||||||||| Sbjct 528 AG-TGGAGTGT-CTAAAACTGATTGCTTGGGCTAAAAGATGTGTGAAGAGAGAGAG 581 > Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 Length=1941 Score = 263 bits (142), Expect = 2e-69 Identities = 267/325 (82%), Gaps = 18/325 (6%) Strand=Plus/Plus Query 59 GAGGTGATTCTTCTGGATTTCTGGGCGAGTATGTTTGGGATGAGGACAAGAATTGC-TCT 117 |||||||||||||| ||||||||| |||||||||| ||||||||||| || || || | | Sbjct 10 GAGGTGATTCTTCTTGATTTCTGGCCGAGTATGTTCGGGATGAGGACGAGGATCGCAT-T 68 Query 118 G-GCGGAGAAAAGAGTT-AAGTACGA-TCACAGAGAAGAAGATCTATGGAATAAGAGCTC 174 | | ||||||| | ||| || | || | ||||||||||||||||| |||| ||||| || Sbjct 69 GAG-GGAGAAAGGTGTTGAA-TTTGAGT-ACAGAGAAGAAGATCTAAGGAACAAGAG-TC 124 Query 175 C-TTGCTCCTCGAGATGAACCCGGTTCATAAGAAAATTCCGGTTCTCATCCACAATGGTA 233 | ||||| ||| ||||||| ||| |||| ||||| ||||||||||||||||||||||||| Sbjct 125 CTTTGCTTCTCCAGATGAATCCGATTCACAAGAAGATTCCGGTTCTCATCCACAATGGTA 184 Query 234 AACCGGT-ATGTGAATCTCTCATTCAGAT-CGAGTACATAGACGAGA-CTTGGCC-CGAC 289 ||||||| | |||||| |||| ||| | | ||||||| |||||| || || | | || Sbjct 185 AACCGGTTAAC-GAATCTATCATCCAGGTTC-AGTACATTGACGAGGTCT-GGTCTC-AC 240 Query 290 AATAACCCTCTCCTTCCCTCCGATCCTTACAAGAGAGCTCATGCCAAATTCTGGGCCGAC 349 || |||||| ||||||| || ||||||||| ||||||| || || | ||||||||| || Sbjct 241 AAGAACCCTATCCTTCCTTCTGATCCTTACCAGAGAGCCCAGGCTAGATTCTGGGCTGAT 300 Query 350 TTCATCGACAAAAAGGTGAATGTTA 374 ||||| ||||||||| | ||||||| Sbjct 301 TTCATTGACAAAAAGCTTAATGTTA 325 > Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1 Length=852 Score = 261 bits (141), Expect = 6e-69 Identities = 483/641 (75%), Gaps = 51/641 (8%) Strand=Plus/Plus Query 45 CAACAATGGCAGATGAGGTGATTCTTCTGGATTTCTGGGCGAGTATGTTTGGGATG-AGG 103 ||| |||||| ||||| ||||| || |||||||||||| ||||| || ||| | | | Sbjct 63 CAATAATGGCGGATGAAGTGATCCTCCTGGATTTCTGGCCGAGT-CCATTCGGA-GTAAG 120 Query 104 A-CAAGAATTGCTCTGGCG-GAGAAAAGAGTTAAGTACGA-TCACAGAGAAGAAG-ATCT 159 | ||||||| || || | | |||||| ||||| ||| || | ||||||||| || ||| Sbjct 121 AGCAAGAATCGCGCT-GAGAGAGAAAGGAGTTGAGTTTGAGT-ACAGAGAAG-AGAATC- 176 Query 160 ATG-GA-ATAAGAGCTCC-TTGCTCCTCGAGATGAACCCGGTTCATAAGAAAATTCCGGT 216 || || | |||||| || ||||| ||| ||||||| |||||| | ||||| |||||||| Sbjct 177 -TGAGAGACAAGAGC-CCTTTGCTTCTCCAGATGAATCCGGTTTACAAGAAGATTCCGGT 234 Query 217 TCTCATCCACAATGGTAAACCGGTATGTGAATCTC-TCA---TTCAGATCGAGTACATAG 272 ||||||||||||||||||||| || |||||||| | | | || | || ||||||| | Sbjct 235 TCTCATCCACAATGGTAAACCAGTTTGTGAATC-CATGAACGTT--GTTC-AGTACATCG 290 Query 273 ACGAGACTTGGCCCGACAATAACCCTCTCCTTCCCT-CCGATCCTTACAAGAGAGCTCAT 331 ||||| |||| ||||||| |||||| |||| |||| ||||||||||| |||||||||| Sbjct 291 ACGAGGTTTGGTCCGACAAAAACCCTATCCT-CCCTTCCGATCCTTACCAGAGAGCTCAA 349 Query 332 GCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGC-GAGAAGGATTTG 390 |||| ||| |||| ||| ||| |||||| ||| || || | || || ||| || || Sbjct 350 GCCAGATTTTGGGTCGATTTCGTCGACACCAAGCTGTTTGAGCCAGCAGATAAG-ATCTG 408 Query 391 GGCGGTC-AAAGGTGAGGAGCAAGA-AGCAGCCAAG---GAGT-TAATCGAAATACTCAA 444 | | | ||||| ||||| ||||| | |||||||| |||| || | ||| ||| || Sbjct 409 G-CAAACTAAAGGCGAGGAACAAGAGA-CAGCCAAGAAAGAGTATATT-GAAGCACTTAA 465 Query 445 GACGCTAGAGTCTGAGCTTGGAGACAAAAAGTACTTTGGAG-ACGAAACTTTTGGGTAT- 502 ||| || || |||||||||||||||||| |||||||| | | || || ||||||| | Sbjct 466 GACTCTTGAATCTGAGCTTGGAGACAAACCTTACTTTGGTGGA-GATACATTTGGGT-TC 523 Query 503 GTAGATATAGCTC-TCATTGGAT-TCCATAGCTGGTTTGCAGTGT-ACGAGAAGTTTGGA 559 |||||||| || | | | ||||| | | |||||||| | || | | ||||| || | Sbjct 524 GTAGATATTGC-CATGACTGGATATT-ACAGCTGGTTCGAAGCATCA-GAGAAATTAGCT 580 Query 560 AA-TGTCAGTATCGAATCTGAGTGTTCGAAATTGGTTGCGTGGGCCAAAAGGTGTTTGGA 618 || | |||| |||||| | |||||| | | | || | || | ||| || |||||||| | Sbjct 581 AACT-TCAGCATCGAACCAGAGTGTCCCACACTGATGGCTTCGGCTAAGCGGTGTTTGCA 639 Query 619 GAGAGAGAGCGTCGCTAAAGCC-CTGCCTGAGTCAGAGAAG 658 |||||| ||||| | ||| | | || | ||| || |||||| Sbjct 640 GAGAGAAAGCGTGGTTAA-GTCTCTTCATGATTCTGAGAAG 679 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31642021110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5