BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17745.2 Length=2360 Score E Sequences producing significant alignments: (Bits) Value Ahg471986 jgi|Araly1|471986|fgenesh2_kg.1__1940__AT1G17745.1 1893 0.0 > Ahg471986 jgi|Araly1|471986|fgenesh2_kg.1__1940__AT1G17745.1 Length=2111 Score = 1893 bits (1025), Expect = 0.0 Identities = 1229/1321 (93%), Gaps = 39/1321 (3%) Strand=Plus/Plus Query 854 AGGAGCAAGTACGTCGGTGTATCTCTCGTCGGAAAAACCTTGGCCGTGATGGGTTTCGGG 913 ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| Sbjct 827 AGGAGCAAGTACGTCGGCGTATCTCTTGTCGGAAAAACCTTAGCCGTGATGGGTTTCGGG 886 Query 914 AAAGTTGGGACGGAGGTGGCGAGAAGAGCCAAAGGTCTAGGCATGACCGTTATCTCCCAC 973 ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 887 AAAGTCGGGACGGAGGTGGCGAGAAGAGCCAAGGGTCTAGGCATGAACGTTATCTCCCAC 946 Query 974 GACCCTTACGCGCCAGCTGACAGAGCCAGAGCTCTCGGTGTCGATCTTGTTTCATTCGAT 1033 |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 947 GACCCTTACGCGCCAGCTGACAGAGCCAGAGCTCTCGGTGTCGATCTTGTCTCCTTTGAT 1006 Query 1034 CAAGCTATCTCCACCGCCGATTTCGTCTCCCTGCACATGCCTTTAACTCCGGCCACCAAA 1093 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1007 CAAGCTATCTCCACCGCCGATTTCGTCTCCCTCCACATGCCTTTAACTCCGGCCACCAAA 1066 Query 1094 AAGGTCTTCAACGACGAAACTTTCTCTAAGATGAAGAAAGGTGTGCGTCTCATTAATGTC 1153 |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct 1067 AAGGTCTTCAACGACGAAACCTTCTCGAAGATGAAGAAAGGTGTTCGTCTCATTAATGTC 1126 Query 1154 GCTAGAGGTGGCGTCATCGACGAGGATGCACTCGTTAGAGCTCTCGATGCCGGAATCGTT 1213 |||||||| ||||||||||| |||||||| |||||||||||||| ||| ||||||||||| Sbjct 1127 GCTAGAGGCGGCGTCATCGATGAGGATGCGCTCGTTAGAGCTCTTGATACCGGAATCGTT 1186 Query 1214 GCTCAGGCAGCATTAGATGTGTTCTGTGAGGAACCACCATCGAAAGATAGCAGACTAATT 1273 ||||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||| Sbjct 1187 GCTCAGGCAGCATTAGATGTGTTCTGTGAGGAACCACCATCGAAAGACAGCAAATTGATT 1246 Query 1274 CAGCATGAAAATGTTACTGTGACACCTCATCTTGGAGCTAGCACAAAAGAAGCTCAGGAA 1333 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1247 CAGCATGAAAATGTTACTGTAACACCTCATCTTGGAGCTAGCACAAAAGAAGCTCAGGAA 1306 Query 1334 GGTGTAGCCATTGAGATAGCAGAGGCTGTAGCAGGGGCATTGAA-AGGAGAGTTATCAGC 1392 ||||||||||| ||||||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 1307 GGTGTAGCCATCGAGATAGCAGAGGCTGTAGCAGGGGCATT-AAGAGGCGAGCTATCAGC 1365 Query 1393 TACTGCCGTCAATGCTCCAATGGTGGCTCCTGAGGTCTTGTCTGAGTTGACTCCTTATAT 1452 ||||| || | | ||| | ||||| | || ||||| ||| | | Sbjct 1366 TACTG-CG-----G-T-CAA---T-GCTCC--A--------ATG-GTTGA-TCC-T-GA- 1398 Query 1453 TGTCTTAGCTGAGAAGCTTGGGAGGTTAGCTGTGCAGTTAGCATCTGGAGGTAAAGGAGT 1512 || ||| || | | || |||||||||||||| || |||||||||||| |||||||||| Sbjct 1399 -GTTTTATCT--G-A-CTAGGGAGGTTAGCTGTCCAATTAGCATCTGGA-GTAAAGGAGT 1452 Query 1513 ACAGTCCATTAGGGTGGTCTATCGGTCAGCTCGTG-ACCGAGATGATTTGGATACTAGAC 1571 |||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| Sbjct 1453 ACAGTCCATTAGGGTGGTGTATCGGTCAGCTCG-GAACCGAGATGATTTGGATACTAGAC 1511 Query 1572 TACTTCGTGCAATGATCACAAAGGGAATCATTGAACCGATCTCAGATTCATATGTCAA-C 1630 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1512 TACTTCGTGCAATGATCACAAAGGGAATCATTGAACCGATCTCAGATTCATACGTCAACC 1571 Query 1631 TTGGTGAATGCTGATTTCATAGCTAAACAAAAGGGTCTTCGTATTAGTGAGGAACGAATG 1690 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1572 TT-GTGAATGCTGATTTCATAGCTAAACAAAAGGGTCTTCGTATTAGTGAAGAACGAATG 1630 Query 1691 GTTGTTGATTCATCACCAGAGTACCCTGTTGATTCCATCCAAGTTCAGATTTTGAATGTG 1750 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1631 GTGGTTGATTCATCACCAGAGTACCCTGTTGATTCTATCCAAGTTCAGATTTTGAATGTG 1690 Query 1751 GAGTCAAATTTCGCTGGTGCTGTCTCTGATGCTGGTGATATAAGTATTGAAGGGAAGGTG 1810 || || || ||||||||||||||||||||| |||||||||||||||| |||||||| ||| Sbjct 1691 GAATCGAACTTCGCTGGTGCTGTCTCTGATTCTGGTGATATAAGTATCGAAGGGAAAGTG 1750 Query 1811 AAGTACGGAGTTCCGCATTTAACTTGTGTCGGATCATTTGGTGTGGATGTGAGCCTTGAA 1870 || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1751 AAATATGGAGTTCCGCATTTAACCTGTGTCGGATCATTTGGTGTGGATGTGAGCCTTGAA 1810 Query 1871 GGGAATCTGATACTGTGCAGGCAAGTGGATCAACCAGGGATGATTGGACAGGTTGGTAAC 1930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1811 GGGAATCTGATACTGTGCAGGCAAGTGGATCAACCAGGGATGATTGGACAGGTTGGTAAC 1870 Query 1931 ATACTTGGAGAACAAAACGTGAATGTGAATTTCATGAGTGTTGGAAGAACAGTGTTGAGG 1990 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1871 ATACTTGGGGAACAAAACGTGAATGTGAATTTCATGAGTGTTGGAAGAACGGTCTTGAGG 1930 Query 1991 AAACAAGCGATAATGGCGATTGGAGTTGATGAAGAACCAGACAACAAAACACTTGAGAGG 2050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1931 AAACAAGCGATAATGGCGATTGGAGTTGATGAAGAACCAGACAACAAAACACTTGAGAGG 1990 Query 2051 ATTGGGGGTGTTTCTGCGATTGAAGAGTTTGTGTTTCTTAAACTATAAAGTTTGAGATGG 2110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1991 ATTGGGGGTGTTTCTGCGATTGAAGAGTTTGTGTTTCTGAAACTATAAAGTTTGAGATGG 2050 Query 2111 AGTTGCATTGTGGTGTATGGAGAATAAAACTGTGACCCGGATTAAGGTGTTTTATCCAGT 2170 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 2051 AGTTGCATTGTGGTGTATGAAGAATAAAACTGTGACCCGGATTAAGGTGTTTTATCCTGT 2110 Query 2171 G 2171 | Sbjct 2111 G 2111 Score = 1151 bits (623), Expect = 0.0 Identities = 705/745 (95%), Gaps = 4/745 (1%) Strand=Plus/Plus Query 20 CCACAATGTGAAAGATTAAATTAAAACTCATCCATTACCTCCTGTAAGCTCTATATTAAC 79 ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 74 CCATAATGAGAAAGATTAAATTAAAACTCATCCATTACCTCATGTAAGCTCTATATTAAC 133 Query 80 CACTTTAGCT-CTTCTGCACACACTCACAACAACCAATCATATTTATTATTaaaaaaaaG 138 ||| |||| | ||||| ||||||||||||||||||||||||| ||| | ||||||||| Sbjct 134 CACGTTAG-TCCTTCTTCACACACTCACAACAACCAATCATAGTTA-AAAAAAAAAAAAG 191 Query 139 -AGTCATGGCATTTTCATCTTCGTGTTCGTCCGTCAAAGCCGTCAACTCACGGTGGACGT 197 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 192 CAGTCATGGCATTTTCATCTTCATGTTCGTCCGTCAAGGCCGTCAACTCACGGTGGACGT 251 Query 198 CTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCCTCCCTGCTTTCCTTCACCGCCGTT 257 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 252 CTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCATCCCTGCTTTCCTCCACCGCCGTT 311 Query 258 ACGCAACAAGCGTCAAACTAACGGCCATAAGCGCCGCCTTAAAAACCGTCGAGCAAACGA 317 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 312 ACGCAACAAGCGTCAAACTAACGGCCACAAGCGCCGCCTTAAAAACCGTCGAGCAAACGA 371 Query 318 CGTTAACAGAGGATAACAGATTCTCAACCGTCGGATCTGACTCTGATGAATACAATCCAA 377 |||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||| Sbjct 372 CGTTAACAGAGGATAACAAATTCTCCACCGTCGGATCTGATTCTGATGAATATAATCCAA 431 Query 378 CTCTTCCAAAGCCGAGGATCCTCGTCACCGAGAAACTGGGAGAAGCCGGCGTGAATCTCC 437 | |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 432 CGCTTCCAAAGCCGAGGATCCTCGTCGCCGAGAAACTCGGAGAAGCCGGCGTGAATCTCC 491 Query 438 TCAGGGAATTCGGCGACGTTGACTGCTCTTACGATCTTTCGCCGGAAGATCTGAAGAAGA 497 ||| ||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 492 TCAAGGAATTCGGTGACGTTGACTGCTCTTATGATCTTTCACCGGAGGATCTGAAGAAGA 551 Query 498 AAGTGGCGGAGAGTGACGCTCTGATCGTGAGAAGCGGAACTAAAGTGACGAGGGAAGTGT 557 |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 552 AAGTGGCGGAGACTGACGCTCTGATCGTGAGAAGCGGGACAAAAGTGACGAGGGAAGTGT 611 Query 558 TTGAGGCGGCGAAGGGGAGGTTGAAAGTGGTCGGAAGAGCCGGAGTTGGGATTGACAATG 617 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 612 TTGAGGCGGCGAAGGGGCGGTTGAAAGTGGTCGGAAGAGCCGGAGTTGGGATTGACAATG 671 Query 618 TTGATCTGCAGGCGGCGACGGAGCACGGGTGTTTGGTGGTTAATGCTCCAACGGCTAATA 677 ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 672 TTGATCTGCAGGCAGCGACGGAGCACGGCTGTTTGGTGGTTAATGCTCCGACGGCTAATA 731 Query 678 CGGTGGCTGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGGCACGTAACGTTGCTC 737 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 732 CGGTGGCCGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGGCACGTAACGTCGCTC 791 Query 738 AGGCCGACGCTTCTATTAAAGCCGG 762 |||||||||| |||||||||||||| Sbjct 792 AGGCCGACGCGTCTATTAAAGCCGG 816 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88902631830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5