BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17840.1
Length=3045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471997 jgi|Araly1|471997|fgenesh2_kg.1__1951__AT1G17840.1 4503 0.0
> Ahg471997 jgi|Araly1|471997|fgenesh2_kg.1__1951__AT1G17840.1
Length=2838
Score = 4503 bits (2438), Expect = 0.0
Identities = 2747/2888 (95%), Gaps = 54/2888 (2%)
Strand=Plus/Plus
Query 8 aaaagagaaacaaccaaaaagaaagaagaagaagTGTTTGTTCTGTTTCAGTCATTCAAG 67
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct 1 AAAAGAGAAACAACCAAAAAGAAACAAGGAGAAGTGTTTGTTCTGTTTCAGTCATCCAAG 60
Query 68 TTCATGAGAATAGAAACGAGTCCAAGTTTGTTGTTCATGCAAAATTCTCATGACTCTGTT 127
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTCATGAGAATAAAAACGAGTCCAAGTTTGTTGTTCATGCAAAATTCTCATGACTCTCTT 120
Query 128 ACACTCCTGAATTTCTTCTACTTATATTCCATTCAATAACTTTTCTTCTTCTATCAGTTC 187
|||||||||||||||||||||||| ||| || |||||||| ||| || ||||||||||||
Sbjct 121 ACACTCCTGAATTTCTTCTACTTAAATTTCACTCAATAAC-TTTATTTTTCTATCAGTTC 179
Query 188 AACGTTCACACActttttccatttcctcgacaaactcctttttttctctcacttttctcg 247
|||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 180 AACGTT--CACACTTTTTCCATTTCCTCGACAAACTCCTTTTTTT-TCTCA--------G 228
Query 248 aattctttttttttttttttCTCTCAACGAAACATAAATCCTCTGTTTTGGTTTAAGAGA 307
|||| ||||||| | | ||||| ||||||||||||| |||||||||||
Sbjct 229 -ATTC--------TTTTTTT-T-T-----AAACAAAAATCCTCTGTTTCGGTTTAAGAGA 272
Query 308 TGGAGATAGAAGCAAGCAGACAACAAACCACCGTACCGGTTTCAGTCGGCGGTGGGAATT 367
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 273 TGGAGATAGAAGCAAGCAGACAGCAAACCACCGTACCGGTTTCAGTCGGCGGAGGGAATT 332
Query 368 TTCCGGTTGGTGGGTTAAGTCCGTTGAGTGAAGCTATATGGAGAGAGAAAGCTCCAACGG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TTCCGGTTGGTGGGTTAAGTCCGTTGAGTGAAGCTATATGGAGAGAGAAAGCTCCAACGG 392
Query 428 AGTTTGTCGGAGACGTGTCAGCGAGGCTTACGTGGCAAGATCTGACGGTGATGGTGACTA 487
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 393 AGTTCGTCGGAGACGTGTCAGCGAGGCTCACGTGGCAAGATCTGACGGTGATGGTGACTA 452
Query 488 TGGGAGATGGTGAGACTCAAAATGTTCTTGAAGGTCTTACCGGTTACGCTGAACCGGGAT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TGGGAGATGGTGAGACTCAAAATGTTCTTGAAGGTCTTACCGGTTACGCTGAACCGGGAT 512
Query 548 CTCTCACGGCTCTCATGGGCCCTTCCGGCTCCGGGAAATCTACTATGCTCGACGCAT-TA 606
||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| | ||
Sbjct 513 CTCTCACGGCTCTCATGGGTCCTTCCGGCTCTGGAAAATCAACTATGCTCGACGC-TCTA 571
Query 607 GCTAGCCGCCTCGCTGCTAACGCTTTTCTCTCCGGCACCGTTCTTCTTAACGGCCGCAAA 666
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GCTAGCCGCCTCGCCGCTAACGCTTTTCTCTCCGGCACCGTTCTTCTTAACGGCCGCAAA 631
Query 667 ACCAAACTCTCCTTTGGAACAGCTGCATATGTGACCCAAGACGATAACTTGATTGGTACG 726
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 632 ACCAAACTCTCCTTTGGAACAGCTGCGTATGTGACACAAGACGATAACTTGATTGGGACG 691
Query 727 TTAACTGTGAGAGAGACGATTTGGTATTCAGCGAGAGTTCGTCTTCCGGACAAGATGTTA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TTAACTGTGAGAGAGACGATTTGGTATTCAGCGAGAGTTCGTCTTCCGGACAAGATGTTA 751
Query 787 CGGTCGGAGAAGCGTGCTCTAGTGGAAAGGACAATAATAGAGATGGGTCTTCAGGATTGT 846
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 752 CGGTCGGAGAAGCGTGCTCTTGTGGAGAGGACAATAATAGAGATGGGTCTTCAGGATTGT 811
Query 847 GCAGATACTGTCATAGGAAATTGGCATTTGCGTGGAATTAGTGGTGGAGAGAAGAGAAGA 906
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GCAGATACTGTTATAGGAAATTGGCATTTGCGTGGAATTAGTGGTGGAGAGAAGAGAAGA 871
Query 907 GTCAGTATTGCTCTTGAGATTTTAATGAGACCTCGTTTGCTGTTTCTCGATGAGCCAACA 966
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 872 GTCAGTATTGCTCTTGAGATTCTAATGAGACCTCGTTTACTGTTTCTCGATGAGCCAACA 931
Query 967 AGTGGTCTTGATAGTGCTTCTGCTTTCTTTGTGACTCAGACTTTGCGTGCTTTATCACGA 1026
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 932 AGTGGTCTCGATAGTGCTTCTGCTTTCTTTGTGACTCAGACATTGCGTGCGCTATCACGA 991
Query 1027 GATGGAAGGACGGTGATAGCATCGATCCACCAACCGAGCAGTGAGGTTTTTGAGTTGTTT 1086
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 992 GATGGAAGGACGGTGATTGCATCGATCCATCAACCGAGCAGTGAGGTTTTCGAGTTGTTT 1051
Query 1087 GATCGGTTGTATCTGCTTTCTGGAGGCAAAACTGTTTACTTTGGTCAAGCTTCAGATGCA 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 GATCGGTTGTATCTGCTTTCTGGAGGCAAAACTGTTTACTTTGGTCAAGCTTCAGATGCA 1111
Query 1147 TATGAGTTCTTTGCACAAGCTGGGTTTCCATGTCCTGCGTTAAGGAACCCTTCTGATCAT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 TATGAGTTCTTTGCACAAGCTGGGTTTCCATGTCCTGCGTTAAGGAACCCTTCTGATCAT 1171
Query 1207 TTCCTGAGATGCATAAACTCAGACTTTGACAAAGTTAGAGCCACTTTGAAAGGTTCTATG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TTCCTGAGATGCATAAACTCAGACTTTGACAAAGTTAGAGCCACTTTGAAAGGTTCTATG 1231
Query 1267 AAGCTAAGGTTTGAAGCAAGCGATGATCCGTTGGAAAAGATTACCACAGCCGAAGCTATT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AAGCTAAGGTTTGAAGCAAGCGATGATCCGTTGGAAAAGATTACCACAGCCGAAGCTATT 1291
Query 1327 AGACTATTGGTTGACTATTACCACACTTCTGATTACTACTACACAGCAAAGGCTAAGGTT 1386
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AGAGTCTTGGTTGACTATTACCACACTTCTGATTACTACTACACAGCAAAGGCTAAGGTT 1351
Query 1387 GAGGAGATATCCCAATTTAAAGGGACTATTCTTGACTCCGGAGGCAGCCAGGCTAGTTTC 1446
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1352 GAGGAGATATCCCAATTTAAAGGGACTATTCTTGACTCTGGAGGCAGCCAGGCTAGTTTC 1411
Query 1447 CTTCTGCAGACCTACACTTTAACAAAGCGATCATTCATCAACATGTCAAGGGACTTTGGT 1506
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1412 CTTCTGCAGACCTACACTTTAACAAAGCGATCCTTCATCAACATGTCAAGGGACTTTGGA 1471
Query 1507 TATTACTGGCTCAGACT-TCTAATTTACATCTTGGTCACAGTCTGCATTGGAACCATCTA 1565
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1472 TATTACTGGCTCAGACTGT-TAATTTACATCTTGGTCACAGTCTGCATCGGAACCATCTA 1530
Query 1566 TCTGAACGTTGGGACTAGCTACAGCGCCATTCTGGCACGGGGCTCATGTGCGTCTTTCGT 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 TCTGAACGTTGGGACTAGCTACAGCGCCATTCTGGCACGGGGCTCATGTGCGTCTTTCGT 1590
Query 1626 CTTTGGCTTTGTAACATTCATGTCAATTGGTGGATTTCCTTCGTTCGTTGAAGACATGAA 1685
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1591 CTTTGGCTTTGTAACATTCATGTCAATTGGTGGATTTCCTTCGTTTGTTGAAGACATGAA 1650
Query 1686 GGTCTTCCAAAGAGAGAGACTAAACGGGCACTATGGAGTAGCTGCGTTTGTGATAGCCAA 1745
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1651 GGTCTTCCAAAGAGAGAGACTAAATGGGCACTATGGAGTAGCTGCGTTTGTGATAGCCAA 1710
Query 1746 CACATTATCTGCAACACCATTCCTGATCATGATAACTTTCATCTCCGGGACAATCTGTTA 1805
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1711 CACATTATCTGCAACGCCATTCCTTATCATGATAACTTTTATCTCCGGGACAATCTGTTA 1770
Query 1806 CTTCATGGTGGGTCTGCATCCAGGATTCACTCACTACCTCTTCTTTGTTCTCTGCCTCTA 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 CTTCATGGTGGGTCTGCATCCAGGATTCACTCACTACCTCTTCTTTGTTCTCTGCCTCTA 1830
Query 1866 TGCAAGTGTCACCGTTGTGGAGAGCTTAATGATGGCAATTGCTAGTATTGTTCCCAACTT 1925
||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1831 TGCAAGTGTCACCGTAGTAGAGAGCTTAATGATGGCGATAGCTAGCATTGTTCCCAACTT 1890
Query 1926 CCTCATGGGTATCATCATCGGAGCTGGAATCCAGGGGATCTTCATGCTGGTTTCTGGATT 1985
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 CCTAATGGGTATCATCATCGGAGCTGGAATCCAGGGGATCTTCATGCTGGTTTCTGGATT 1950
Query 1986 CTTCAGGCTTCCAAATGACATCCCAAAACCTTTCTGGCGTTACCCAATGTCCTACATCAG 2045
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1951 CTTCAGGCTTCCAAATGACATCCCAAAACCTTTCTGGCGTTATCCAATGTCATACATCAG 2010
Query 2046 CTTCCACTTCTGGGCTCTACAAGGTCAGTACCAGAATGATCTGAGAGGCTTGACGTTTGA 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2011 CTTCCACTTCTGGGCTCTACAAGGTCAGTACCAGAATGATCTGAGAGGCTTGATGTTTGA 2070
Query 2106 CAGCCAAGGGAGTGCTTTCAAGATTCCGGGTGAATATGTTCTTGAGAACGTCTTTCAGAT 2165
||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2071 CAGTCAGGGGAGTGCTTTCAAGATTCCGGGTGAATATGTTCTGGAGAACGTCTTCCAGAT 2130
Query 2166 CGACTTGCATCGATCAAAATGGATTAACCTCAGTGTGATTCTTAGCATGATTATCATCTA 2225
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 CGACCTGCACCGATCAAAATGGATTAACCTCAGTGTGATTCTTAGCATGATTATCATCTA 2190
Query 2226 CCGCATCATCTTCTTCATCATGATTAAGACCAACGAGGATGTTACTCCTTGGGTCAGAGG 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191 CCGCATCATCTTCTTCATCATGATTAAGACCAACGAGGATGTTACTCCTTGGGTCAGAGG 2250
Query 2286 TTACATAGCACGCAGAAGGATGAAGCAGAAGAATGGAACTCAGAACACCACAGTTGCACC 2345
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2251 TTACATAGCACGCAGAAGGATGAAGCAGAAGAATGGAACCCAGAACACCACAGTTGCACC 2310
Query 2346 AGATGGTCTTACCCAGTCTCCTTCTCTGAGAAATTACATTGCTACACGAACAGATGGAGC 2405
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2311 AGACGGTCTTACCCAGTCTCCTTCTCTGAGAAATTACATTGCTACACGAACAGACGGAGC 2370
Query 2406 TCGCAGATGGTAGAGCTTGATCCTGTCCAGTGTTTGAAGATACTTCATGAAAATTGATCA 2465
||||||||||||||| |||| ||||||||||||||||||| |||||| |||| |||||||
Sbjct 2371 TCGCAGATGGTAGAGTTTGAGCCTGTCCAGTGTTTGAAGACACTTCAAGAAAGTTGATCA 2430
Query 2466 AAGCAAAGCCACCATATTTCACTAGGCCTGCAATATCAAAACTCCATGTAATGTGACAGC 2525
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2431 AAGCAAAGCCACCATATTTCACTAGGCCTGCAATATCAAATCTCCATGTAATGTGACAGC 2490
Query 2526 AGAGAAACTTCGAGTGTGTTAGTTATAGAAATATTAAAACCACGGATTTGTCTAAAATAA 2585
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2491 TGAGAAACTTCAAGTGTGTTAGTTATAGAAATATTAAAACCACGGATTTGTCTAAAATAA 2550
Query 2586 TCACTACTACATTTATTTTTCTACTTTGGTATTAACAAGTACCATCTTGTTGCATTACAG 2645
||||||||||||||||| ||||||||||||| ||||||| || |||||||||||||||||
Sbjct 2551 TCACTACTACATTTATTCTTCTACTTTGGTAGTAACAAGCACTATCTTGTTGCATTACAG 2610
Query 2646 TTTGCATTGTGCCGAAATTACAGCAGATAGATTAAGTTGTGAATTGTTACAAGCTTTGTT 2705
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2611 TTTGCATTGTGCCGCAATTACAGCAGATAGATTAAGTTGTGAATTGTTACAAGCTTTGTT 2670
Query 2706 TGTACATGTTGAAATGAAAA-TTGAGTTCTGAGTTCTGACAAGTGTTACACCTGAAGAAC 2764
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 2671 TGTACATGTTGAAATGAAAAATTGAGTTCTGAGTTCTGACAAGTGTCACACCCGAAGAAC 2730
Query 2765 CTCAAAGAATGACTACTAGTTCTTCCTGGAACAGGCTTGTAATTAAACTTCATTAGCTTC 2824
||| ||||||||||| || | | |||| | || |||||||||||||
Sbjct 2731 CTCTAAGAATGACTA---GT---------A---G--TTGT--TCAA-CTTCATTAGCTTC 2770
Query 2825 TGCTTCAGCACTCATCTGCTTTTGCTGTGTGCTGTT-CTCATCTGATCACTTGCCCATGG 2883
| ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2771 TTCTTCAGCACTCTTCTGCTTTTTCTGTGTGCTGTTTCTCATCTGATCACTTGCCCATGA 2830
Query 2884 TAGACCAA 2891
||| ||||
Sbjct 2831 TAGGCCAA 2838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114994449655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5