BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17860.1 Length=738 Score E Sequences producing significant alignments: (Bits) Value Ahg920711 jgi|Araly1|920711|scaffold_101992.1 867 0.0 > Ahg920711 jgi|Araly1|920711|scaffold_101992.1 Length=631 Score = 867 bits (469), Expect = 0.0 Identities = 565/612 (92%), Gaps = 4/612 (1%) Strand=Plus/Plus Query 25 AAAAGAAAACTTCCTACAATGTCATCACTTCTCTATATCTTCCTCCTCTTGGCCGTCTTC 84 |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 3 AAAAGAAATCTTCCTACAATGTCCTCACTTCTCTATATCTTCCTCCTCTTTGCCGTCTTT 62 Query 85 ATCAGCCACCGTGGAGTCACCACCGAAGCAGCCGTCGAACCAGTTAAGGACATCAATGGA 144 | |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 63 ACCAGCCACCGTGGAGCCACCACCGAAGCTGCCGTCGAACCAGTTAAGGACATCAATGGA 122 Query 145 AAATCTCTCCTCACAGGCGT-CAACTACTACATCTTGCCTGTAATTCGCGGCCGTGGAGG 203 ||| ||||||| || | || |||||||||||||||||||||| |||||||||| ||||| Sbjct 123 AAACCTCTCCTAAC-GAAGTACAACTACTACATCTTGCCTGTAGTTCGCGGCCGCGGAGG 181 Query 204 CGGACTAACCATGTCAAACTT-AAAGACCGAAACCTGTCCCACAAGTGTGATCCAAGACC 262 |||| |||||||||| ||||| ||| | |||||||||||| | ||||||||||||||||| Sbjct 182 CGGATTAACCATGTCCAACTTCAAA-AACGAAACCTGTCCGAGAAGTGTGATCCAAGACC 240 Query 263 AATTTGAAGTCTCTCAAGGCCTACCGGTTAAATTCTCACCATATGACAAATCAAGAACCA 322 | || ||||||||||||||| |||| ||||||||||||||||||||||||||||| | | Sbjct 241 AGTTCGAAGTCTCTCAAGGCTTACCAGTTAAATTCTCACCATATGACAAATCAAGTATCG 300 Query 323 TCCCTGTCTCAACTGATGTAAACATCAAATTCTCTCCAACTTCGATCTGGGAATTAGCCA 382 ||| ||||||||| ||| ||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 301 TCCGTGTCTCAACCGATCAAAACATCAAGTTCTCTCCAACCTCGATATGGGAATTAGCCA 360 Query 383 ATTTCGACGAGACGACGAAACAATGGTTCATTTCAACTTGTGGCGTTGAAGGGAATCCCG 442 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 361 ATTTCGACGAGAGGACGAGTCAATGGTTCATTTCAACTTGTGGCGTTGAAGGGAATCCGG 420 Query 443 GTCAGAAAACGGTTGATAACTGGTTCAAGATCGACAAATTTGAAAAAGATTACAAGATCA 502 |||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 421 GTCAGAAAACAGTTGGTAACTGGTTTAAGATCGACGAATTTGAAAAAGATTACAAGATCA 480 Query 503 GGTTTTGTCCTACTGTCTGCAATTTCTGCAAAGTCATCTGTAGAGACGTTGGAGTGTTTG 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GGTTTTGTCCTACTGTCTGCAATTTCTGCAAAGTCATCTGTAGAGACGTTGGAGTGTTTG 540 Query 563 TGCAAGATGGAAAGAGAAGACTTGCTTTAAGTGATGTTCCACTAAAGGTTATGTTCAAAA 622 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 541 TGCAAGATGGAAAGAGAAGACTTGCTTTAAGTGAGGTTCCATTAAAGGTTATGTTCAAAA 600 Query 623 GAGCATACTAGA 634 ||||||||||| Sbjct 601 AAGCATACTAGA 612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27181639821 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5