BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17870.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920712 jgi|Araly1|920712|scaffold_101993.1 2697 0.0
> Ahg920712 jgi|Araly1|920712|scaffold_101993.1
Length=1762
Score = 2697 bits (1460), Expect = 0.0
Identities = 1668/1769 (94%), Gaps = 12/1769 (1%)
Strand=Plus/Plus
Query 18 TTTCTGAGTTTTCGTAAACCATGGCTTCTCTCTTTGTTTCTACTCCATCATCTTCCTTAA 77
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 1 TTTCTGAGTTTTCGTAAACCATGGCTTCTCTCTTTGTATCTACTCCCTCACCTTCCTTGG 60
Query 78 CTCTTAAATCCTGTCACAGTTTGCATCTTCGTCGCTTTGACAGAGCAGAAT-TTTC-GAA 135
|||| ||||||||||||| ||||| |||||||||||||||||| | || |||| |||
Sbjct 61 CTCTCAAATCCTGTCACAATTTGCGTCTTCGTCGCTTTGACAG-TC-CCATATTTCAGAA 118
Query 136 CTTTGGGAAAGCTTCTGTGAATCAGACAACGAGAAGCAGACATTC-TTTGAGATGTTCAG 194
||||| ||||||| |||||||||||||| |||||||||| | || ||||||||||||||
Sbjct 119 ATTTGGAAAAGCTTATGTGAATCAGACAAGGAGAAGCAGA-AATCTTTTGAGATGTTCAG 177
Query 195 CGGAAGATGATCGCGTTCGTGAACCTGTGAACGAAGCTCCTTCTCCGGTGGCGTTAGCGG 254
| ||||||||||| ||||||||||||||||| |||||| | |||||||||||| ||||||
Sbjct 178 CTGAAGATGATCGAGTTCGTGAACCTGTGAAGGAAGCTTCGTCTCCGGTGGCGATAGCGG 237
Query 255 AGGAGCAAAAAGAAG-ACCACGATAACAATAATGCGCCGCCTTCTCCAGAGAGCAGTGAA 313
|||||| ||||| || |||||| | |||||||||||||||||||||||| |||||||||
Sbjct 238 AGGAGC-AAAAGGAGAACCACGCGAGCAATAATGCGCCGCCTTCTCCAGAAAGCAGTGAA 296
Query 314 GAAGAGGAGGAAAAGAAGTCGAAGCAGCAAGAGATGGATTGGAAAACAGACGAGGAGTTC 373
|| |||||||||||||| || ||||||||||||||||| |||||||| || |||||||||
Sbjct 297 GAGGAGGAGGAAAAGAAATCAAAGCAGCAAGAGATGGACTGGAAAACGGATGAGGAGTTC 356
Query 374 AAGAAGTTTATGGGGAATCCATCTATCGAAGCTGCGATAAAGCTTGAGAAGACGAGAACT 433
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 357 AAGAAGTTTATGGGAAATCCATCAATCGAAGCTGCTATAAAGCTTGAGAAGACGAGAACT 416
Query 434 GATCGTAAGCTCAAGGAGCTGAACAAGGAAAGCAACAGTGAGAATCCGATCATTGGAATT 493
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 417 GATCGTAAGCTCAAGGAGCTGAACAAGGAAAGCAACAGTCAGAATCCGATCATCGGAATT 476
Query 494 TACAACAGCTTGGCTCGTGATAGTTTGACTAAAGAGAAAGAAAGGCTTGAGAAAGCAGAA 553
| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 477 TTGAACAGCTTGGCTCGTGATACTTTGACTAGAGAGAAAGAAAGACTTGAGAAAGCAGAA 536
Query 554 GAGACTTTCAAGGCTCTTGATCTCAACAAGTTGAAGAGCTGTTTTGGGTTCGATACATTT 613
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 GAGACTTTCAAGGCTCTTGATCTCAACAAGTTGAAGAGCTGTTTTGGGTTCGATACGTTT 596
Query 614 TTCGCTACGGATGTTCGCCGGTTTGGAGATGGAGGAATCTTCATTGGGAACCTGAGAAAA 673
|| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 597 TTTGCTACGGACGTTCGTCGGTTTGGAGATGGAGGAATCTTCATTGGGAATCTCAGAAAA 656
Query 674 CCCATTGATGAAGTCACACCTAAGCTTGAAGCTAAGCTATCTGAAGCAGCTGGGCGTGAT 733
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CCCATTGATGAGGTCACACCTAAGCTTGAAGCTAAGCTATCTGAAGCAGCTGGGCGTGAT 716
Query 734 GTTGTTGTGTGGTTTATGGAAGAAAGGTCCAATGAGATCACAAAGCAGGTGTGTATGGTG 793
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 717 GTTGTTGTGTGGTTTATGGAAGAAAGGTCCAATGAGATCACAAAACAGGTGTGTATGGTG 776
Query 794 CAGCCGAAGGCGGAAATTGATCTACAGTTTGAATCAACTAGATTAAGCACTCCTTGGGGA 853
|| |||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 777 CAACCGAAGGCGGAAATCGATTTACAATTTGAATCGACTAGATTAAGCACTCCTTGGGGA 836
Query 854 TATGTTAGTGCAATTGCTTTATGTGTTACAACCTTTGGAACCATAGCTCTTATGAGTGGG 913
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 837 TATGTTAGTGCAATTGCTTTATGTGTTACAACCTTTGGAACCATAGCGCTTATGAGTGGG 896
Query 914 TTTTTCCTGAAACCCGACGCCACTTTTGATGACTACATTGCTAATGTAGTTCCTCTTTTT 973
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTTTTCCTTAAACCTGACGCCACTTTTGATGACTACATTGCTAATGTAGTTCCTCTTTTT 956
Query 974 GGCGGGTTCCTTTCCATCTTAGGTGTCTCAGAGATAGCAACTAGAGTAACCGCTGCGCGA 1033
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 957 GGCGGGTTCCTTTCCATCTTAGGCGTCTCAGAGATTGCAACCAGAGTAACCGCTGCGCGA 1016
Query 1034 CACGGTGTCAAATTAAGCCCGTCGTTTCTTGTGCCATCAAATTGGACTGGTTGCTTAGGA 1093
|||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 1017 CACGGTGTCAGATTAAGCCCATCGTTTCTGGTGCCATCGAATTGGACTGGTTGCTTAGGA 1076
Query 1094 GTTATGAACAATTATGAGTCATTGCTTCCTAATAAAAAGGCGTTATTCGACATCCCAGTA 1153
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 GTTATGAACAATTACGAGTCATTGCTTCCTAATAAAAAGGCGTTATTCGATATCCCAGTA 1136
Query 1154 GCCCGTACAGCTAGCGCGTACCTGACCTCGCTTCTGCTTGCAGCAGCTGCGTTTATATCT 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCCCGTACAGCTAGCGCGTACCTGACCTCGCTTCTGCTTGCAGCAGCTGCGTTTATATCT 1196
Query 1214 GATGGTAGTTTCAATGGAGGTGACAATGCTTTGTATATAAGACCACAGTTCTTT-GACAA 1272
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||
Sbjct 1197 GATGGTAGTTTCAATGGAGGAGACAATGCTTTGTATATAAGACCACAGTT-TTTCGATAA 1255
Query 1273 TAACCCGTTGCTTTCATTTGTCCAATTCGTTGTTGGTCCTTATGCGGATGATCTTGGTAA 1332
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TAACCCGTTGCTTTCGTTTGTCCAATTCGTTGTTGGTCCTTATGCGGATGATCTTGGTAA 1315
Query 1333 TGTATTACCTAATGCGGTTGAAGGAGTTGGTGTTCCAGTTGATCCGCTCGCTTTCGCTGG 1392
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1316 TGTATTGCCTAACGCGGTTGAAGGAGTTGGTGTTCCAGTTGATCCGCTTGCTTTCGCTGG 1375
Query 1393 TCTTTTGGGTATGGTAGTGACTTCATTGAACTTATTACCATGTGGAAGACTTGAAGGAGG 1452
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1376 TCTTTTGGGTATGGTAGTGACTTCATTGAACTTATTACCATGTGGAAGACTCGAAGGAGG 1435
Query 1453 TCGAATCGCTCAAGCCATGTTTGGAAGAAGCACAGCTGCAATTCTCTCATTTACCACATC 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TCGAATCGCTCAAGCCATGTTTGGAAGAAGCACAGCTGCAATTCTCTCATTTACCACATC 1495
Query 1513 ACTCCTTCTTGGTATCGGAGGTCTCAGCGGAAGCGTCTTGTGTTTAGCTTGGGGGCTATT 1572
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1496 ACTCCTTCTCGGTATAGGAGGTCTCAGCGGAAGCGTCTTATGTTTAGCTTGGGGGCTATT 1555
Query 1573 CGCAACCTTCTTCCGCGGTGGCGAAGAAACACCCGCAAAAGACGAAATCACACCTGTAGG 1632
|||||||||||||||||| || |||||||||||||| |||||||||||||| || ||||
Sbjct 1556 CGCAACCTTCTTCCGCGGAGGTGAAGAAACACCCGCGAAAGACGAAATCACCCCCCTAGG 1615
Query 1633 GGACGATAGGTTCGCTTGGGGTATAGTCCTTGGACTCATTTGCTTCCTCACTCTATTTCC 1692
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1616 CGACGATAGGTTCGCTTGGGGTATAGTCCTTGGACTCATATGCTTCCTCACTCTCTTTCC 1675
Query 1693 TAACAGTGGAGGTACTTTCTCCACTTCATTCTTCAATGGACCTTTCTTCCGTGGTGATGA 1752
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TAACAGCGGAGGTACTTTCTCCACTTCATTCTTCAATGGACCTTTCTTCCGTGGTGATGA 1735
Query 1753 TTTCTAAAGAATGTATAGATTAAGATGCA 1781
||||||||||||||| ||||||| ||||
Sbjct 1736 TTTCTAAAGAATGTA--GATTAAGTTGCA 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5