BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17940.1 Length=1734 Score E Sequences producing significant alignments: (Bits) Value Ahg920718 jgi|Araly1|920718|scaffold_101999.1 2093 0.0 Ahg926713 jgi|Araly1|926713|scaffold_202274.1 1376 0.0 > Ahg920718 jgi|Araly1|920718|scaffold_101999.1 Length=1259 Score = 2093 bits (1133), Expect = 0.0 Identities = 1218/1260 (97%), Gaps = 2/1260 (0%) Strand=Plus/Plus Query 217 TTTCTTAAGTTCTG-TGAAAAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGG 275 ||||||||| |||| || ||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 1 TTTCTTAAGCTCTGTTG-AAAATGGGATGCTTTGCATCAACACCGAAAGACTCTGGTGGG 59 Query 276 AACAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA 335 || ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 60 AATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGATA 119 Query 336 CCCAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAA 395 || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 120 CCGAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTGGAA 179 Query 396 CGCTTGACAGCTTTAAGAACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATT 455 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 180 CGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACAATT 239 Query 456 ACGAGAACTAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT 515 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT 299 Query 516 TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT 359 Query 576 AAAGTGCAATTTAATTGGGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAAC 635 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 360 AAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCAAAC 419 Query 636 GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC 695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC 479 Query 696 AATTTACTGCTTCTTCCTAGAGGTTCTAGTGATGGTCACAATCATCCGAAAGTATCCGAA 755 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 480 AATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCCGAA 539 Query 756 GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCC 815 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 540 GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGTGCC 599 Query 816 GTTAAGCATGTTCTCCCCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTA 875 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 600 GTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGACTTA 659 Query 876 GCAGAAGGAACTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA 935 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GCGGAAGGGGTTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA 719 Query 936 CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT 995 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT 779 Query 996 GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAAT 1055 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 780 GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTAGCAAAT 839 Query 1056 GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG 1115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG 899 Query 1116 GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG 1175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG 959 Query 1176 GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAA 1235 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 960 GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGCATCTGAA 1019 Query 1236 GCATTCAACGCCTCTGCGCCTACTTCAAGAACACCGCCCCTCTTTGGAACAATGAAATAT 1295 ||||| ||||||||| | ||||||||||| |||||||| || |||||||||||||| ||| Sbjct 1020 GCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTTGGAACAATGAAGTAT 1079 Query 1296 CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTAC 1355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1080 CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTATAC 1139 Query 1356 TCCTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA 1415 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA 1199 Query 1416 CCAGATGAGTATCAACTTCCACTCGCCGAAGCTTCGTAGTCTGAAGATGCTCAAAGCGCT 1475 |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct 1200 CCAGATGAGTATCAACTTCCTCTCGTCGAAGCTTAGTAGTCTGAAGATGCTCAAAGCGCT 1259 > Ahg926713 jgi|Araly1|926713|scaffold_202274.1 Length=1315 Score = 1376 bits (745), Expect = 0.0 Identities = 1074/1234 (87%), Gaps = 17/1234 (1%) Strand=Plus/Plus Query 235 AAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGGAACAGAAGAAAGCCAACAA 294 |||||||||||||||| |||| |||||| ||| | ||||| ||||||||||||||||| | Sbjct 19 AAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACAGAAGAAAGCCAACGA 78 Query 295 GCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA-CCCAGAGCGGTGGA-TTT 352 ||||||| || ||||| ||||| |||||||||||||||||| ||||| | ||||| ||| Sbjct 79 GCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCCAG-CCTGTGGAGTTT 137 Query 353 TTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAACGCTTGACAGCTTTAAG 412 | | |||||||| ||||||||||| || |||||| | ||||| ||||||||||||||||| Sbjct 138 TCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCTTGACAGCTTTAAG 196 Query 413 AACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATTACGAGAACTAGGAGAAA 472 |||||| || || |||||||| |||||||||||||| || || || ||||||||||| || Sbjct 197 AACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAAGAACTAGGAGGAA 256 Query 473 GACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCTTTGCTAGATTATCTACC 532 |||||| ||||||||||| || ||| |||||||||||||||||| |||||||||||| Sbjct 257 GACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGGAAGATTATCTACC 316 Query 533 TGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTTAAAGTGCAATTTAATTG 592 |||| |||| |||||||||||||||||||||||| |||| | ||||| || |||||||| Sbjct 317 TGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAGTACAGTTTAATTG 376 Query 593 GGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAACGTTTGGTATGAAGTTTT 652 |||||||||||| |||||| |||||||||||| || |||||||||||||||||| | | Sbjct 377 GGTAAATCAGGAAGATGAGCAAGAGGAAACAGCCATATCAAACGTTTGGTATGAAATACT 436 Query 653 ATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCCAATTTACTGCTTCTTCC 712 || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 437 GTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAATTTACTACTTCTTCC 496 Query 713 TAGAGGTTCTAGTGATGGTCACAATCATCCGAAAG-TATCCGAAGAAAACAGACGAACTT 771 ||||||||| |||||||| | | |||||| |||| |||| |||||||| || ||| ||| Sbjct 497 TAGAGGTTCCAGTGATGG-CT-A-TCATCC-AAAGATATCAGAAGAAAATAGGCGAGCTT 552 Query 772 CGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCCGTTAAGCATGTTCTCC 831 | || |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| | Sbjct 553 CAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAGCATGTTCTTC 612 Query 832 CCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTAGCAGAAGGAACTCTAC 891 | |||||||| | |||| ||||||||||||||||||||| |||||||||| || ||| Sbjct 613 CTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAAGGCGCTTTAC 672 Query 892 GGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATATCCAACTTGGCATGGCGATT 950 | || ||||| ||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 673 GAGCACTTTGTTTGCAAGCA-TTAGGCCAGGGTGTTGATATCCAACTTGGGATGGCGATT 731 Query 951 GATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGTGAAATGGTGAAATA 1009 ||||| | |||| ||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 732 GATAG-TGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATGGTGAAATA 790 Query 1010 TTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAATGGTTGGGGAGAAAA 1069 |||||||||||||||||||| ||||||||||| || |||||||| || ||||| ||||| Sbjct 791 CTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGGGGCGAAAA 850 Query 1070 GCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCGGCTTACTACTATCA 1129 |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 851 GCATAGTCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTACTACTACCA 910 Query 1130 TGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATGGCAGTTGCTGCTTT 1189 |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| Sbjct 911 CGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGTTGCTGCTTT 970 Query 1190 ACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAAGCATTCAACGCCTC 1249 ||| ||||||||||| |||||||||||||||||||||||| || || || ||| |||| Sbjct 971 ACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTTTAACACCTC 1030 Query 1250 TGCGCCTACTTCAAGAACACCGCCCCTCTTT-GGAACAATGAAATATCTAACTGAGAAAA 1308 | | || || ||||| || || || || ||| || ||||||||||||||| | ||||||| Sbjct 1031 TTCACCCACATCAAGGACTCCTCCACT-TTTCGGGACAATGAAATATCTATCAGAGAAAA 1089 Query 1309 TCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTACTCCTATGAAAAAA 1368 | |||||||| ||||| ||||||||||||||||||| |||||| ||||| |||||||| | Sbjct 1090 TACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTATGAAAAGA 1149 Query 1369 TCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAACCAGATGAGTATC 1428 |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||| | Sbjct 1150 TCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGATGAGTACC 1209 Query 1429 AACTTCCA-CTCGCCGAAGCTTCGTAGTCTGAAG 1461 ||||||| || | ||| || || | |||||||| Sbjct 1210 AACTTCCTTCT-GTCGATGCGTCATGGTCTGAAG 1242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65058138460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5