BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G17940.1

Length=1734
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920718 jgi|Araly1|920718|scaffold_101999.1                       2093    0.0  
  Ahg926713 jgi|Araly1|926713|scaffold_202274.1                       1376    0.0  


> Ahg920718 jgi|Araly1|920718|scaffold_101999.1
Length=1259

 Score = 2093 bits (1133),  Expect = 0.0
 Identities = 1218/1260 (97%), Gaps = 2/1260 (0%)
 Strand=Plus/Plus

Query  217   TTTCTTAAGTTCTG-TGAAAAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGG  275
             ||||||||| |||| || ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct  1     TTTCTTAAGCTCTGTTG-AAAATGGGATGCTTTGCATCAACACCGAAAGACTCTGGTGGG  59

Query  276   AACAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA  335
             || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  60    AATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGATA  119

Query  336   CCCAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAA  395
             || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  120   CCGAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTGGAA  179

Query  396   CGCTTGACAGCTTTAAGAACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATT  455
             ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  180   CGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACAATT  239

Query  456   ACGAGAACTAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT  515
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240   ACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT  299

Query  516   TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT  575
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300   TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT  359

Query  576   AAAGTGCAATTTAATTGGGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAAC  635
             ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  360   AAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCAAAC  419

Query  636   GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC  695
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420   GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC  479

Query  696   AATTTACTGCTTCTTCCTAGAGGTTCTAGTGATGGTCACAATCATCCGAAAGTATCCGAA  755
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  480   AATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCCGAA  539

Query  756   GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCC  815
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  540   GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGTGCC  599

Query  816   GTTAAGCATGTTCTCCCCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTA  875
             ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  600   GTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGACTTA  659

Query  876   GCAGAAGGAACTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA  935
             || |||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  660   GCGGAAGGGGTTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA  719

Query  936   CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT  995
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  720   CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT  779

Query  996   GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAAT  1055
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  780   GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTAGCAAAT  839

Query  1056  GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG  1115
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  840   GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG  899

Query  1116  GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG  1175
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  900   GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG  959

Query  1176  GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAA  1235
             ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  960   GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGCATCTGAA  1019

Query  1236  GCATTCAACGCCTCTGCGCCTACTTCAAGAACACCGCCCCTCTTTGGAACAATGAAATAT  1295
             ||||| ||||||||| | ||||||||||| |||||||| || |||||||||||||| |||
Sbjct  1020  GCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTTGGAACAATGAAGTAT  1079

Query  1296  CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTAC  1355
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1080  CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTATAC  1139

Query  1356  TCCTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA  1415
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1140  TCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA  1199

Query  1416  CCAGATGAGTATCAACTTCCACTCGCCGAAGCTTCGTAGTCTGAAGATGCTCAAAGCGCT  1475
             |||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct  1200  CCAGATGAGTATCAACTTCCTCTCGTCGAAGCTTAGTAGTCTGAAGATGCTCAAAGCGCT  1259


> Ahg926713 jgi|Araly1|926713|scaffold_202274.1
Length=1315

 Score = 1376 bits (745),  Expect = 0.0
 Identities = 1074/1234 (87%), Gaps = 17/1234 (1%)
 Strand=Plus/Plus

Query  235   AAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGGAACAGAAGAAAGCCAACAA  294
             |||||||||||||||| |||| |||||| ||| | ||||| ||||||||||||||||| |
Sbjct  19    AAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACAGAAGAAAGCCAACGA  78

Query  295   GCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA-CCCAGAGCGGTGGA-TTT  352
             ||||||| || ||||| ||||| |||||||||||||||||| |||||  | ||||| |||
Sbjct  79    GCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCCAG-CCTGTGGAGTTT  137

Query  353   TTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAACGCTTGACAGCTTTAAG  412
             | | |||||||| ||||||||||| || |||||| | ||||| |||||||||||||||||
Sbjct  138   TCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCTTGACAGCTTTAAG  196

Query  413   AACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATTACGAGAACTAGGAGAAA  472
             |||||| || || |||||||| |||||||||||||| || || || ||||||||||| ||
Sbjct  197   AACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAAGAACTAGGAGGAA  256

Query  473   GACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCTTTGCTAGATTATCTACC  532
             |||||| ||||||||||| || |||   ||||||||||||||||||  ||||||||||||
Sbjct  257   GACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGGAAGATTATCTACC  316

Query  533   TGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTTAAAGTGCAATTTAATTG  592
             |||| |||| |||||||||||||||||||||||| |||| |  ||||| || ||||||||
Sbjct  317   TGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAGTACAGTTTAATTG  376

Query  593   GGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAACGTTTGGTATGAAGTTTT  652
             |||||||||||| |||||| ||||||||||||  || |||||||||||||||||| |  |
Sbjct  377   GGTAAATCAGGAAGATGAGCAAGAGGAAACAGCCATATCAAACGTTTGGTATGAAATACT  436

Query  653   ATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCCAATTTACTGCTTCTTCC  712
              || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  437   GTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAATTTACTACTTCTTCC  496

Query  713   TAGAGGTTCTAGTGATGGTCACAATCATCCGAAAG-TATCCGAAGAAAACAGACGAACTT  771
             ||||||||| |||||||| |  | |||||| |||| |||| |||||||| || ||| |||
Sbjct  497   TAGAGGTTCCAGTGATGG-CT-A-TCATCC-AAAGATATCAGAAGAAAATAGGCGAGCTT  552

Query  772   CGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCCGTTAAGCATGTTCTCC  831
             | || |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |
Sbjct  553   CAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAGCATGTTCTTC  612

Query  832   CCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTAGCAGAAGGAACTCTAC  891
             | ||||||||  | ||||  ||||||||||||||||||||| ||||||||||  || |||
Sbjct  613   CTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAAGGCGCTTTAC  672

Query  892   GGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATATCCAACTTGGCATGGCGATT  950
             | || ||||| ||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct  673   GAGCACTTTGTTTGCAAGCA-TTAGGCCAGGGTGTTGATATCCAACTTGGGATGGCGATT  731

Query  951   GATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGTGAAATGGTGAAATA  1009
             ||||| | |||| ||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct  732   GATAG-TGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATGGTGAAATA  790

Query  1010  TTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAATGGTTGGGGAGAAAA  1069
              |||||||||||||||||||| ||||||||||| || |||||||| || ||||| |||||
Sbjct  791   CTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGGGGCGAAAA  850

Query  1070  GCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCGGCTTACTACTATCA  1129
             |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  851   GCATAGTCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTACTACTACCA  910

Query  1130  TGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATGGCAGTTGCTGCTTT  1189
              |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct  911   CGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGTTGCTGCTTT  970

Query  1190  ACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAAGCATTCAACGCCTC  1249
             ||| ||||||||||| ||||||||||||||||||||||||   || || || ||| ||||
Sbjct  971   ACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTTTAACACCTC  1030

Query  1250  TGCGCCTACTTCAAGAACACCGCCCCTCTTT-GGAACAATGAAATATCTAACTGAGAAAA  1308
             | | || || ||||| || || || || ||| || ||||||||||||||| | |||||||
Sbjct  1031  TTCACCCACATCAAGGACTCCTCCACT-TTTCGGGACAATGAAATATCTATCAGAGAAAA  1089

Query  1309  TCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTACTCCTATGAAAAAA  1368
             | |||||||| ||||| ||||||||||||||||||| |||||| ||||| |||||||| |
Sbjct  1090  TACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTATGAAAAGA  1149

Query  1369  TCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAACCAGATGAGTATC  1428
             |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||| |
Sbjct  1150  TCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGATGAGTACC  1209

Query  1429  AACTTCCA-CTCGCCGAAGCTTCGTAGTCTGAAG  1461
             |||||||  || | ||| || || | ||||||||
Sbjct  1210  AACTTCCTTCT-GTCGATGCGTCATGGTCTGAAG  1242



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65058138460


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5