BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18020.1 Length=1179 Score E Sequences producing significant alignments: (Bits) Value Ahg911616 jgi|Araly1|911616|Al_scaffold_0001_1870 577 7e-164 > Ahg911616 jgi|Araly1|911616|Al_scaffold_0001_1870 Length=900 Score = 577 bits (312), Expect = 7e-164 Identities = 363/388 (94%), Gaps = 2/388 (1%) Strand=Plus/Plus Query 24 ATGGAGACTAAACAGAGTATCCCTCTCCTCATGCCCTATAAGATGGGACCCTTCAATCTT 83 |||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||| Sbjct 1 ATGGAGACAAAACAGAGTATCCCTCTCCTCGCGCCCTATAAGATGAGACTCTTCAATCTT 60 Query 84 TCTCACAGGGTTGTT-TTGGCGCCATTGACTAGATCGAGATCGTATGGTAACATTCCTCA 142 ||||||||||||||| || ||||||||||| ||||| |||||||||||| ||||||||| Sbjct 61 TCTCACAGGGTTGTTCTT-GCGCCATTGACGAGATCTCGATCGTATGGTAGCATTCCTCA 119 Query 143 GCCTAATGCCAAATTATATTACACTCAGAGAACAACACCTGGTGGTCTTCTTATTTCCGA 202 |||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 120 GCCTCATGTCAAATTATATTACACTCAGAGGACAACACCTGGTGGACTTCTTATTTCCGA 179 Query 203 ATCCTGTGTAGTCTCCGAGACATCATTGGGCTATCCGGATTTACCTGGATTATGGAACAG 262 | |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||| ||| Sbjct 180 AGCCTGTGCAGTGTCCGAGACATCATTGGGCTATCCGGATATACCTGGAATATGGACCAG 239 Query 263 AGACCAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGAAAGGCGGTATCTT 322 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 240 AGAACAAGTGGAGGCATGGAAGCCCATCGTGGATGCGGTTCATTCGCAAGGCGGTATCTT 299 Query 323 CTTCTGCCAGATTTGGCATGGTGGCAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 382 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 300 CTTCTGCCAGATTTGGCACGGTGACAGAGTTTTTCATCAAGACCAGCCAAATGGGGAAGC 359 Query 383 ACCCGTCTCCTCTACAGACAAGCCATTG 410 |||||||||||||||||||||||||||| Sbjct 360 ACCCGTCTCCTCTACAGACAAGCCATTG 387 Score = 540 bits (292), Expect = 1e-152 Identities = 355/385 (92%), Gaps = 5/385 (1%) Strand=Plus/Plus Query 525 GGCTTCGATGGAGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 584 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GGCTTCGATGGCGTGGAGGTTCACGGCGCACATGGTTACCTGATCGATCAGTTCCTGAAA 474 Query 585 GACAAAGTGAATGACAGAAGTGACCAATATGGTGGGTCATTAGAGAACCGCTGTAGATTT 644 ||||||||||||||||||||||| |||| ||||||||| | |||||||||||||||||| Sbjct 475 GACAAAGTGAATGACAGAAGTGATGAATACGGTGGGTCACTCGAGAACCGCTGTAGATTT 534 Query 645 GCTCTTGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTTCAGATCGTGTTGGAATCAGA 704 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 535 GCTCTGGAAGTAATCGAAGCAGTGGTGAACGAGATCGGTCCAGATCGTGTTGGAATCAGA 594 Query 705 CTCTCGCCATTTGCAGATTACATGGAGTCAGGAGACTCGAATCCAGAAGCATTAGGGCTC 764 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 595 CTCTCGCCATTCGCAGATTACATGGAGTCCGGAGACTCGAATCCAGAAGCATTAGGGCTC 654 Query 765 TACCTGGTGCAAGCTATGAACAAGCATGGCATGGAGTCGTCTACGGTCACATGGTTGAAC 824 ||||||||||||||||||||||||||||| | | || | ||| ||||| | ||||||| Sbjct 655 TACCTGGTGCAAGCTATGAACAAGCATGG-A---A-TCCTTTACTGTCACTTAGTTGAAC 709 Query 825 CTAGAATGAAAACCCTTGAAGGAATCTTCGAATGCACGGAATCGCTTACGCCCATGCGAA 884 ||||||||||||||| |||||||||||| || |||| |||||||||||| || ||| ||| Sbjct 710 CTAGAATGAAAACCCCTGAAGGAATCTTTGAGTGCAAGGAATCGCTTACTCCGATGAGAA 769 Query 885 AAGCCTTCAAAGGTACGTTCATAGT 909 ||||||||||| ||||||||||| Sbjct 770 TTGCCTTCAAAGGAACGTTCATAGT 794 Score = 119 bits (64), Expect = 5e-26 Identities = 75/80 (94%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 962 ACCGATCTTGTGGCTTATGGACGGCCGTTCTTGGCGAATCCGGATCTGAC-GAGGAGATT 1020 ||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||| Sbjct 822 ACCGATCTTGTGGCTTATGGAAGGACGTTCTTGGCGAATCCGGATCTG-CTCAGGAGATT 880 Query 1021 CGAACTCAATGAGCCGTTGA 1040 |||||||||||||||||||| Sbjct 881 CGAACTCAATGAGCCGTTGA 900 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43993846218 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5