BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18060.1 Length=1003 Score E Sequences producing significant alignments: (Bits) Value Ahg920732 jgi|Araly1|920732|scaffold_102013.1 1136 0.0 Ahg920730 jgi|Araly1|920730|scaffold_102011.1 111 8e-24 > Ahg920732 jgi|Araly1|920732|scaffold_102013.1 Length=721 Score = 1136 bits (615), Expect = 0.0 Identities = 683/716 (95%), Gaps = 3/716 (0%) Strand=Plus/Plus Query 116 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGTGTTTCGTCCCCATCTTCTTCG 175 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 6 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGGGTTTCGTCCCCATCTTCTTC- 64 Query 176 TCTCTGTTCTTTAGTCGTCGGGAGAGATTACATTTGGTGAAAGCCACGGTGGATGGCAGG 235 |||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 65 TCTC--TTCCTTAGTCGTCGCGAGAGATTACATTTGGTGAAAGCCACGGTCGATGGTAGG 122 Query 236 AACCAGATTGTCCCACCGGCAAAAGATCAAATCCCTAACAAACAAGTAACGGAGAGTGTG 295 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 123 AACCAGATTGTCCCACCGGCAAAAGAGCAAATCCCTAACAAAGAAGTAACGGAGAGTGTG 182 Query 296 AATGTATTAAAAACGGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 355 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 AATGTGTTAAAAACCGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 242 Query 356 TTCTCTGCTATCGAAAAGGCTAAGATTGATCCATCCACTTTCCTTGAAACGCTTGGTGGT 415 || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 243 TTTTCTGCTATTGAAAAGGCTAAGATTGATCCATCCACATTCCTTGAAACCCTTGGTGGT 302 Query 416 CCCGAGTCTCCTGGACGAACATGGATGCTTATCTTCACCGCCGAGAAGAAACTGACGAAA 475 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 303 ACCGAGTCTCCTGGACGAACATGGATGCTCATCTTCACCGCCGAGAAGAAACTGAAGAAA 362 Query 476 GGTCGTTATTTCCCTCTAACTGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 535 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 363 GGTCGTTATTTCCCTCTAACCGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 422 Query 536 AATGGGGTGTATCTTGGTCCATTTGGAGCATTAACATTCGAAGGAAGGTTTTCATGGAAG 595 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 423 AATGGGGTGTATCTTGGTCCATTAGGAGCATTAACATTCGAAGGAAGGTTTTCTTGGAAG 482 Query 596 AATCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 655 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 AACCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 542 Query 656 CTAGAGTTCAGCTTGGGGAAGAAAGACGCTGTGGAAGAGCCTAGTAATAAAGACCCTTTC 715 |||||| |||| ||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 543 CTAGAGATCAGTTTGGGGAAGAAAGACGCCGAGGAAGAGCCGAGTAATAAAGACCCTTTC 602 Query 716 TTCATTTGGTTCTACATCGATGAAGAAATAGCCGTTGCTCGAGGTAGAAGTGGCGGTACA 775 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 603 TTCATTTGGTTTTACATCGATGAAGAAATAGCCGTTGCTCGAGGAAGAAGTGGCGGTACA 662 Query 776 GCTTTCTGGTGTCGTTGTCGTCGCATTGCTTCCTAATGACTCTCTTCTACTTCTCA 831 |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| Sbjct 663 GCTTTCTGGTGTCGTTGTCGCCGCATTGCTTCCTCATGACTCTCTTCTTCTTCTCA 718 > Ahg920730 jgi|Araly1|920730|scaffold_102011.1 Length=1115 Score = 111 bits (60), Expect = 8e-24 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 561 GAGCATTAACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTTGTCTTCG 620 ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 920 GAGCATTGACATTCGAAGGAAGGTTTTCATGGAAGAATCGGATACTAGCTTTCGTATTCA 979 Query 621 AACAGATCCGCATAAAGA 638 ||||| | |||||||||| Sbjct 980 AACAGTTTCGCATAAAGA 997 Score = 93.5 bits (50), Expect = 3e-18 Identities = 62/67 (93%), Gaps = 3/67 (4%) Strand=Plus/Plus Query 690 AAGA-GCCTAGTAATAAAGACCCTTTCTTCATTTGGTTCTA-CATCGATGAAGAAATAGC 747 |||| ||| ||||||||||||||||||||||||||||| || ||||||||| |||||||| Sbjct 994 AAGACGCCGAGTAATAAAGACCCTTTCTTCATTTGGTT-TAACATCGATGAGGAAATAGC 1052 Query 748 CGTTGCT 754 ||||||| Sbjct 1053 CGTTGCT 1059 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37284212826 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5