BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18100.1 Length=1432 Score E Sequences producing significant alignments: (Bits) Value Ahg920736 jgi|Araly1|920736|scaffold_102017.1 894 0.0 Ahg920735 jgi|Araly1|920735|scaffold_102016.1 732 0.0 > Ahg920736 jgi|Araly1|920736|scaffold_102017.1 Length=564 Score = 894 bits (484), Expect = 0.0 Identities = 537/563 (95%), Gaps = 2/563 (0%) Strand=Plus/Plus Query 57 ATATCTCCCTCCCCGCTGATCGATGGCGGCTTCTGTTGATCCTTTGGTGGTCGGAAGAGT 116 ||||||||||| | | | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 ATATCTCCCTCTCTGTTAATCGATGGCAGCTTCTGTTGATCCTTTGGTGGTCGGAAGAGT 60 Query 117 GATCGGAGATGTGTTGGACATGTTCATCCCAACCGCCAATATGTCTGTCTACTTTGGCCC 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 GATCGGAGATGTGTTGGACATGTTCATCCCAACCGCCAATATGTCTGTCTACTTCGGCCC 120 Query 177 CAAACACATCACTAACGGCTGCGAGATCAAACCCTCCACCGCAGTCAATCCTCCAAAAGT 236 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 CAAACACATCACCAACGGCTGCGAGATTAAACCCTCCACCGCAGTCAATCCTCCAAAAGT 180 Query 237 CAACATCTCGGGCCATTCCGATGAGCTTTACACTCTCGTGATGACTGACCCGGACGCACC 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAACATCTCGGGCCATTCCGATGAGCTTTACACTCTCGTGATGACTGACCCGGACGCACC 240 Query 297 TAGCCCAAGCGAGCCGAACATGAGAGAATGGGTCCACTGGATTGTCGTGGATATTCCCGG 356 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 TAGCCCAAGCGAGCCGAACATGAGAGAATGGGTCCATTGGATTGTCGTGGATATTCCCGG 300 Query 357 AGGCACAAATCCCTCAAGAGGAAAAGAGATACTTCCATACATGGAACCAAGGCCACCAGT 416 |||||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 301 AGGCACCAACCCCTCGAGAGGAAAGGAGATACTTCCATACATGGAACCAAGACCACCAGT 360 Query 417 GGGGATTCACCGTTACATATTGGTACTTTTCCGGCAAAACTCACCGGTGGGTCTGATGGT 476 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGGGATCCACCGTTACATTTTGGTACTTTTCCGGCAAAACTCACCGGTGGGTCTGATGGT 420 Query 477 GCAGCAGCCTCCATCACGAGCCAATTTCAGCACACGAATGTTCGCTGGACATTTCGATCT 536 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 421 GCAGCAGCCGCCATCACGAGCCAATTTCAGCACCCGCATGTTCGCTGGACATTTCGATCT 480 Query 537 TGGTCTACCTGTGGCCACTGTCTATTTCAACGCCCAAAAGGAACCTGCTTCACGCAGACG 596 |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 481 TGGTCTACCTGTGGCCACGGTCTACTTCAACGCCCAAAAGGAGCCTGCTTCACGCAGACG 540 Query 597 CTAGTACAA-AAAGTAAACAAAT 618 ||||||||| ||| |||| ||| Sbjct 541 CTAGTACAAGAAAC-AAACTAAT 562 > Ahg920735 jgi|Araly1|920735|scaffold_102016.1 Length=1774 Score = 732 bits (396), Expect = 0.0 Identities = 479/520 (92%), Gaps = 2/520 (0%) Strand=Plus/Minus Query 914 ACATACCAAAATTAAAGAGATTACAATCGCTGGAAGAAATCTAATATACTGTGTTTCTTC 973 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1774 ACATACCAAAATTAAAGAGATTACAATCGATGGAAGAAATCTAATATACTGTGTTTTTTC 1715 Query 974 TTGATTATAGTCTTGTTGTTCTCTGAACTTTTACAGCTTGTTTTCACTTTGAAATTCTCG 1033 |||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1714 TTGATTGTAGTCTTCTTGTTCTCTGAATTTTTACAGCTTGTTTTCACTTTGAAACTCTCG 1655 Query 1034 GTTCTAGGTTTTGTTCCACGCACTCTCTTTGTCGTCATGTTCACATGATCTTGAACTTCA 1093 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1654 GTTCTAGGTTTTGCTCCACGCACTCTCTTTGTCGTCATGTTCACATGATCTTGAACTTCA 1595 Query 1094 GCTAGATCTACTTCTGTTGTTTCAAATGTTTCTTTCACTCTGTTCTTCTCACTGTCCTGT 1153 |||| |||||| ||||||||||||||||||||||||||| |||||||| || ||| ||| Sbjct 1594 GCTATATCTACCTCTGTTGTTTCAAATGTTTCTTTCACTGTGTTCTTCGCAGAGTCTTGT 1535 Query 1154 TTGATTCCAGCGGCATCAAGTTTGGACAGATCGATTGTAACACACTCTTTTTGATCCTCG 1213 |||||||||| | ||||| |||| || |||||||||||||| |||||||||||||||| Sbjct 1534 TTGATTCCAGAATCTTCAAGCTTGGGCAAATCGATTGTAACACCCTCTTTTTGATCCTCG 1475 Query 1214 TGTTCGTGAGAGTTTGGTGAAGAAGAAGCCACGTCCACTGCTTTGCTTTTGGTCACAAAC 1273 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1474 TGTCCGTGAGAGTTTGGTGAAGAAGAAGCCACGTCCGTTGCTTTGCTTTTGGTCACAAAT 1415 Query 1274 GAATCAGCGAGTTCTTGCACACCGTATTCTGCGATTTCCAGATTGATTTCATCGGTTTTT 1333 ||| ||||||||||||||| |||||| ||||| | ||| ||||||||||||||||||||| Sbjct 1414 GAAACAGCGAGTTCTTGCAAACCGTACTCTGCAAATTCTAGATTGATTTCATCGGTTTTT 1355 Query 1334 CTAATCTTGAACGGGTTGTTGTCCGGAATAAGTGAGGGATTGCTGGGTCGGG-TAACCAC 1392 || |||||||||||||||||||| |||||||||||| |||||||||| | || ||||||| Sbjct 1354 CTTATCTTGAACGGGTTGTTGTCTGGAATAAGTGAGAGATTGCTGGG-CTGGATAACCAC 1296 Query 1393 TTGATCCCTGTTAGGCTGCGCAAGCAGTTTGTATAGATCT 1432 ||||||||||||||||||| ||||||||||| ||||||| Sbjct 1295 CTGATCCCTGTTAGGCTGCGAAAGCAGTTTGTGTAGATCT 1256 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53554884470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5