BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18180.1 Length=1154 Score E Sequences producing significant alignments: (Bits) Value Ahg920744 jgi|Araly1|920744|scaffold_102025.1 1570 0.0 Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341 667 0.0 > Ahg920744 jgi|Araly1|920744|scaffold_102025.1 Length=958 Score = 1570 bits (850), Expect = 0.0 Identities = 919/952 (97%), Gaps = 5/952 (1%) Strand=Plus/Plus Query 58 TGATTGGCCGGAGAGAATGGTGAAAGTAATCGATTCCCATTACCTAGCCATCACCGCCAT 117 ||||| || | |||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 6 TGATT-GCTGTAGAGAATGGTAAAAGTAATCGATTCCCATTACCTTGCCATCACCGCCAT 64 Query 118 TGTCACCGTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCA 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 TGTCACCGTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCA 124 Query 178 AGTTACTGACTTTGCCGGAAGTACAAATTTCGTGATACTTGCTGTATTGACTCTGCTTCT 237 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 125 AGTTACGGACTTTGCCGGAAGTACTAATTTCGTGATACTTGCTGTATTGACTCTGGTTCT 184 Query 238 CAAAGGGACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACT 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 CAAAGGGACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACT 244 Query 298 TCGTCTGGGACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGA 357 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 TCGTCTCGGACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGA 304 Query 358 TGACATGCGTGAAAATATTGGGAAACTAGTAGTCTTTTGGATTTTTCAGGCCGTGTGGGT 417 ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TGAAATGCGTGGAAATATCGGGAAACTAGTAGTCTTTTGGATTTTTCAGGCCGTGTGGGT 364 Query 418 TTGGACTGTTAGTTTACCTGTTACCTTTGTTAATGCAAGCAACGGTGGAAGATTGTTTCA 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 TTGGACTGTTAGTTTACCTGTTACCTTTGTTAATGCAAGCAACGGTGGAAGATTGTTTCA 424 Query 478 GCCCGCAGATGTTATCGGTTGGACAATGTGGGTTGCAGGGTTCTTGATTGAAGCTACAGC 537 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 425 GCCCGCAGATGTTATAGGTTGGACAATGTGGGCTGCAGGGTTCTTGATTGAAGCTACAGC 484 Query 538 TGATCAACAAAAGCTTTCGTTCAAGAAGTGTCCAGAAAACAAAGGAAAATGGTGTGATGT 597 |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| Sbjct 485 TGATCAACAAAAGCTTTCATTCAAGAAGTGTCCAGAAAACAAAGGAAGATGGTGCGATGT 544 Query 598 TGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGGGG 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 TGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGGGG 604 Query 658 CTTATATGTGGCTTCATTGCCTGTGCTTAAAGGTCTCGAGTACCTTGTCATAATTGGACC 717 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 605 CATATATGTGGCTTCATTGCCTGTGCTTAAAGGTGTCGAGTACCTTGTCATAATTGGACC 664 Query 718 AGTCTTTCTCACTTTGCTACTTCTCTTCGTTAGCGGCATACCATTACTCGAGGAATCTGC 777 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 665 AGTCTTTCTCACTTTGCTACTTTTCTTCGTTAGCGGCATACCATTACTCGAGGAATCTGC 724 Query 778 GGACAAAAAGTATGGTAACTTGGGAGCTTATCGACACTACAAGAAGACAACTAGTCCTCT 837 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 GGACAAAAAATATGGTAACTTGGGAGCTTATCGACACTACAAGAAGACAACTAGTCCTCT 784 Query 838 GATTCTCTTACCGCGAGGAGTGTATGGGTACTTACCAATATGGTGCAAATCAGTCTTTCT 897 |||||| ||||| |||||||||||||||||||| |||| |||||||||| |||||||||| Sbjct 785 GATTCTGTTACCACGAGGAGTGTATGGGTACTTGCCAAAATGGTGCAAAACAGTCTTTCT 844 Query 898 CTTTGAGTTTCCATTGTACAGCCGTAATCTTCCTCAAGAGACTACAGCTTGGGATAGACG 957 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 845 TTTTGAGTTTCCATTGTACAGCCGTAATCTTCCTCAAGAGACTACAGCCTGGGATAGACG 904 Query 958 AAACTCgaagaagagccagagaagcattgactgag--ag--agagaaagaga 1005 |||||||||||||||||||||||| |||||||||| || ||||||||||| Sbjct 905 AAACTCGAAGAAGAGCCAGAGAAGTATTGACTGAGGGAGCGAGAGAAAGAGA 956 > Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341 Length=1359 Score = 667 bits (361), Expect = 0.0 Identities = 562/657 (86%), Gaps = 22/657 (3%) Strand=Plus/Plus Query 125 GTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 184 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 673 GTGGTTTACCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 732 Query 185 GACTTTGCCGGAAGTACAAATTTCGTGATACTTGCTGTATTGACTCT-GCTTCTCAAAGG 243 |||||||| || || ||||| ||||| ||||||||||| || || || | |||| |||| Sbjct 733 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTG-TTCTTAAAGC 791 Query 244 GACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACTTCGTCT 303 | ||||||| ||| ||||||||||||||| ||||||| || |||||||| ||||| || Sbjct 792 CTCTTGGCATTTTCGGCAGATAGTCTTGACTTTGCTAGTTGTGGTATGGGGTCTTCG-CT 850 Query 304 -GGG-ACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGATGA- 360 ||| | | |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 851 TGGGGA-TATTCCTCCTAATGAGGATCTTGCAATGGGGCGAAGATCGACGCTTTGATGAA 909 Query 361 CATGCGTGAAAATATTGGGAAACTAGT-AGTCTTT-TGGATTTTTCAGGCCGTGTGGGTT 418 || ||||| ||||| | || |||| | | | ||| |||| | ||||||||||||||||| Sbjct 910 CA-GCGTGGGAATATAGTGAGACTAATCA-T-TTTCTGGACTCTTCAGGCCGTGTGGGTT 966 Query 419 TGGACTGTTAGTTTACCTGTTA-CCTTTGTTAATGCAAGCAACGGTGGAAGAT-TGTTTC 476 ||||| ||||| |||||| ||| || ||||||||||||| | |||||| ||| | || Sbjct 967 TGGACGGTTAGCTTACCT-TTAACCGTTGTTAATGCAAGTGATGGTGGAGGATCTCTTAA 1025 Query 477 AGCCCGCAGATGTTATCGGTTGGACAATGTGGGTTG-CAGGGTTCTTGATTGAAGCTACA 535 | ||||||||||||||||||||||| ||||||||| | || ||||||||||||||| || Sbjct 1026 A-CCCGCAGATGTTATCGGTTGGACTATGTGGGTTTTC-GGTTTCTTGATTGAAGCTGCA 1083 Query 536 GCTGATCAACAAAAGCTTTCGTTCAAGAAGTGTCCAGAAAACAAAGGAAAATGGTGTGAT 595 ||||||||||| ||||| || ||||| || | ||| ||||||| |||||||||||||||| Sbjct 1084 GCTGATCAACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGAT 1143 Query 596 GTTGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGG 655 ||||| || |||||||||||| | |||||||||||||| |||||||||||||| |||||| Sbjct 1144 GTTGGAGTGTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGG 1203 Query 656 GGCTTATATGTGGCTTCATTGCCTGTGCTTAAAGGT-CTCGAGTACCTTGTCATAATT-G 713 || | | ||||||| ||| |||||||||| ||||| | ||||| ||||||||| || | Sbjct 1204 GGGATCTTTGTGGCTGCATCGCCTGTGCTTGAAGGTGCA-GAGTATCTTGTCATA-TTCG 1261 Query 714 GACCAGTCTTTCTCACTTTGCTACTTCTCTTCGTTAGCGGCATACCATTACTCGAGG 770 ||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct 1262 GACCACTCTTTCTCACTTTGCTACTTCTGTTCGTCAGTGGCATACCATTACTCGAGG 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43040773293 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5