BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18330.2 Length=1636 Score E Sequences producing significant alignments: (Bits) Value Ahg472050 jgi|Araly1|472050|fgenesh2_kg.1__2004__AT1G18330.2 1836 0.0 > Ahg472050 jgi|Araly1|472050|fgenesh2_kg.1__2004__AT1G18330.2 Length=1577 Score = 1836 bits (994), Expect = 0.0 Identities = 1263/1387 (91%), Gaps = 41/1387 (3%) Strand=Plus/Plus Query 280 ATTAATCAGCTTTATGCTCTGTTTTGTTCGCTTTCAGGCTGGTTTTGTGAGAATTATAGT 339 |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| || Sbjct 198 ATTAATCAGCTTTATGCTTTGTTTTGTTCGGTTTCAGGCTGGATTTGTGAGAATTACCGT 257 Query 340 TGCAGCAAGAAAGCGTTTCAGATATT-TTT--TAATGGCCGCTGAGGATCGAAGTGAGGA 396 |||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||| Sbjct 258 TGCAGCAAGAAAGCTTTTTAGATATTGTTTAATAATGGCCGCTGAGGATCGAAGTGAGGA 317 Query 397 ACTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAATTAATCCTGAAAC 456 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 318 GCTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAACAAATCCTGAAAC 377 Query 457 CAGCAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCA 516 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 CAGTAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCA 437 Query 517 GAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGG 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 GAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGG 497 Query 577 TCGTGGTTGGCGTCAAATCCAAGAACACATAGGTACAAAAACCGCTGTACAGATACGAAG 636 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 498 TCGTGGTTGGCGTCATATCCAAGAACACATAGGTACGAAAACCGCTGTACAGATACGAAG 557 Query 637 CCATGCTCAAAAGTTCTTCTCCAAGATGGCTCAGGAAGCTGAC-AGTAGAAGTGAAGGAT 695 ||||||||| ||||| ||||||||||||||||||||| ||||| | |||||||||||| | Sbjct 558 CCATGCTCAGAAGTTTTTCTCCAAGATGGCTCAGGAACCTGACTA-TAGAAGTGAAGGGT 616 Query 696 CGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATC 755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 CGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATC 676 Query 756 CTCGGAAATCGCCTGTTCCATATACTCAGTCTCCTCCACCAAATTTGTCAGCTATGGAGA 815 | ||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||| Sbjct 677 CCCGGAAATCGCCTGTTCCGTATTCTCAGTCTCCTTCATCAAATTTGTCAGCTATGGAGA 736 Query 816 AAGGAACCAAGTCTCCAACCTCAGTGTTATCATCGTTTGGTTCAGAGGATCAAGTCAATA 875 ||||| ||||||||||||| ||||| | ||||| |||| ||||||||||||| |||||| Sbjct 737 AAGGAGCCAAGTCTCCAACTTCAGTCCTGTCATCATTTGCTTCAGAGGATCAAATCAATA 796 Query 876 GATGCTCTTCGCCTAATTCGTGTACCAGTGACATCCAATCCATTGGTGCAACTTCCATTG 935 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 797 GATGCTCTTCGCCTAATTCGTGTACCAGTGACATCCAATCCATTGGTGGAACTTCCATTG 856 Query 936 ATAAAAAGAATAACTACACAACATCCAAGCAA-CCTTTCAAAGATGATTCTGACATTGGT 994 ||||||||||| |||| ||||||||||||||| |||| |||||| ||||||||||||||| Sbjct 857 ATAAAAAGAATGACTATACAACATCCAAGCAATCCTT-CAAAGAGGATTCTGACATTGGT 915 Query 995 TCAACACCCATTTCAAGCATTACTCTTTTCGGGAAGATTGTCCTTGTCGCGGAAGAATCT 1054 ||||||||||| ||||||||||| ||||| ||||||||||||||||||| || ||||||| Sbjct 916 TCAACACCCATGTCAAGCATTACCCTTTTTGGGAAGATTGTCCTTGTCGTGGCAGAATCT 975 Query 1055 CA---CAAACCATCCTCTTACA-A--TGATGATGATCTTAAA-CAAATGAC-GTGTCAGG 1106 || ||||||||||||||||| | ||||||||||| |||| ||| |||| | ||||| Sbjct 976 CATGACAAACCATCCTCTTACAGAGATGATGATGATCCTAAATCAA-TGACAGA-TCAGG 1033 Query 1107 AGAATCACTACTCAGGGAT---G----CTAG-TTG-A------CACTAATTTATCTCTTG 1151 ||||||||||||||||||| | |||| ||| | ||||||||||||||||| Sbjct 1034 AGAATCACTACTCAGGGATCAAGAATTCTAGCTTGCATATTGACACTAATTTATCTCTTG 1093 Query 1152 GTGTATGGGAAACGTTTTGTACTGGTTCTAATGCATTTGGCTCGGTTACAGAAGCATCTG 1211 | ||||||||||||| |||||| ||||||||||| |||||||| |||||||||| || | Sbjct 1094 GGGTATGGGAAACGTCTTGTACCGGTTCTAATGCCTTTGGCTCAGTTACAGAAGTGTCAG 1153 Query 1212 AGAACTTGGAGAAAAGTGCAGAGCCGATAAGTTCTTCATGGAAACGGTTAAGCTCCTTAG 1271 ||||||||||||| ||||||||||||||||||| ||||||||||| ||| | |||| | | Sbjct 1154 AGAACTTGGAGAAGAGTGCAGAGCCGATAAGTTGTTCATGGAAACAGTTGACCTCCGTGG 1213 Query 1272 AAAAACAAGGATCTTGTAATCCTGTAAATGCAAGTGGGTTCAGGCCATACAAGAGATGCC 1331 ||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1214 AAAAACAAGGATCATGTAATCCTGCAACTGCAAGTGGGTTCAGGCCATACAAGAGATGCC 1273 Query 1332 TATCAGAAAGAGAAGTAACATCATCATTGACGCTGGTAGCTTCAGATGAAAAGAAAAGCC 1391 |||||||||||||||| || |||||||| | |||||||||||||| ||| ||||||||| Sbjct 1274 TATCAGAAAGAGAAGTTACTTCATCATTCTCACTGGTAGCTTCAGAAGAACAGAAAAGCC 1333 Query 1392 AAAGA-G--CACGTATATGCTAGTTTTAGCCATTGTACAGTTTGGAGTCAATTTTGATGA 1448 ||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 1334 AAAGAAGAGCACGTATATGCTAGTTTTAGCCATTGTACAGTTTGGGGTCACTTTTGATGA 1393 Query 1449 TCCGTGAACATTGTTTTAGCCATTTGCTGGGTGACTTGGATCATAGCATTCCACGAACCA 1508 | ||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 1394 TTCGTCAACATTGTTTTAGCCATT-GCTGGATGACTTGGATCATAACATTCCACGAACCA 1452 Query 1509 AATCCTAAATCCGAGTTGGTAAGTGGTTTT-ACTTGTCCGCCACATGTAATTCTTGTAAT 1567 |||| ||| ||||| |||| ||||| |||| ||||||| ||||||||||||||||||||| Sbjct 1453 AATCTTAA-TCCGAATTGGCAAGTGATTTTTACTTGTCTGCCACATGTAATTCTTGTAAT 1511 Query 1568 GAAGTTTCTCCTG-CTGTCTCACGTTAAGAAGACACTTCt-ttttttCTTCATATACAAA 1625 ||||||||| || ||||||||| |||| |||||| |||| |||||||| |||||||||| Sbjct 1512 GAAGTTTCTG-TGGCTGTCTCACATTAAAAAGACAGTTCTGTTTTTTCTCCATATACAAA 1570 Query 1626 TCAGTTT 1632 | ||||| Sbjct 1571 TTAGTTT 1577 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61325294450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5