BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18360.1 Length=1673 Score E Sequences producing significant alignments: (Bits) Value Ahg920765 jgi|Araly1|920765|scaffold_102046.1 1770 0.0 Ahg926720 jgi|Araly1|926720|scaffold_202281.1 719 0.0 > Ahg920765 jgi|Araly1|920765|scaffold_102046.1 Length=1224 Score = 1770 bits (958), Expect = 0.0 Identities = 1048/1092 (96%), Gaps = 3/1092 (0%) Strand=Plus/Plus Query 285 TAAACCGGATTCAAAATCGAAATGATGTTCCGATTAGTGTCATAGCTACTCGACGATCAT 344 ||||||||||||||| |||||||||| ||||||||||| || | |||||||||||||||| Sbjct 112 TAAACCGGATTCAAATTCGAAATGATCTTCCGATTAGTATCGTTGCTACTCGACGATCAT 171 Query 345 CAATGTCGGTGGAGGCGTTTCCGATGAGGTTAAAATCATCAC---AGAAGAAGAGGAAGA 401 ||||||||||||||||||| || | ||| |||||||| |||| |||||| |||||||| Sbjct 172 CAATGTCGGTGGAGGCGTTGCCAACGAGATTAAAATCTTCACTGAAGAAGACGAGGAAGA 231 Query 402 TGAACATTGGTTGCGGTGTTTCCCCTTCTTCGCCGACGACGACGGTGGTAGATGAGGAAG 461 |||||| ||||||||||||||||||||||||||||| || |||||||| ||||| |||| Sbjct 232 GGAACATCGGTTGCGGTGTTTCCCCTTCTTCGCCGACAACAACGGTGGTTGATGATGAAG 291 Query 462 TAGCCATTAGGCGGAAATTGGCAATGAGACGGGTTTTGGAGGATAACGGTGGCGATGGAA 521 | || |||| ||||| ||||||||||| || |||||||||||||||||||||||||||| Sbjct 292 TGGCGGTTAGACGGAATTTGGCAATGAGGCGCGTTTTGGAGGATAACGGTGGCGATGGAA 351 Query 522 GCTCCGTCAGAGATTTCTCGCTATTCACGACCAAGAGAGGTGACACGTTGTTCACTCAGT 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 GCTCCGTCAGAGATTTCTCGCTATTCACGACCAAGAGAGGTGACACGTTGTTCACTCAGT 411 Query 582 CATGGACTCCTGTTGACTCCGCTAAGAACAGGGGACTTGTTGTTCTGCTTCATGGTCTGA 641 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 412 CATGGACACCTGTTGACTCCGCTAAGAACAGGGGACTTGTTGTTCTGCTACATGGTCTGA 471 Query 642 ACGAACACAGTGGCAGGTATAGTGATTTTGCAAAGCAGCTAAATGTAAATGGATTCAAGG 701 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 472 ACGAACACAGTGGCAGGTATAGTGATTTTGCAAAGCAGCTAAATGTTAATGGATTCAAGG 531 Query 702 TCTATGGAATAGATTGGATCGGTCATGGTGGAAGCGATGGACTTCATGCTTACGTTCCTT 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 532 TCTATGGAATAGATTGGATCGGTCATGGTGGAAGCGATGGACTTCATGCTTACGTTGCTT 591 Query 762 CTCTTGATTATGCTGTCGCTGATTTGAAATCGTTTATTGAGAAGGTAATTGCGGAAAACC 821 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 592 CTCTTGATTATGCTGTCGCTGATTTGAAATCGTTTCTTGAGAAGGTAATTGCGGAAAACC 651 Query 822 CGGGATTGCCCTGTTTCTGCATTGGCCACTCAACAGGAGGAGCCATCATCTTAAAGGCTA 881 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 652 CGGGATTGCCCTGTTTCTGCATTGGCCACTCAACAGGAGGAGCCATAATCTTAAAGGCCA 711 Query 882 TGCTAGATGCAAAGATTGAAGCTCGAGTTTCAGGGATTGTGCTAACTTCACCCGCAGTTG 941 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 TGCTAGATGCAAAGATTGAAGCTCGAGTTTCAGGGATTGTGCTAACTTCACCCGCAGTTG 771 Query 942 GAGTCCAACCAACTTATCCTATCTTCGGCGTAATTGCACCATTCCTCTCGTTCCTCATAC 1001 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 772 GAGTCCAACCAACTTATCCTATCTTCGGCGTAATTGCACCAGTCCTCTCGTTCCTCATAC 831 Query 1002 CGAGATATCAGTTAAGTGCTGCGAAAAAGAAAATAATGCCGGTTTCTCGTGACCCGGAAG 1061 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 832 CGAGATATCAGTTAAGTGCTGCAAAAAAGAAAATAATGCCGGTTTCTCGTGACCCGGAAG 891 Query 1062 CTCTATTGGCTAAATACTCTGACCCGCTAGTCTACACTGGATTTATCCGAGCAAGAACCG 1121 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 892 CTCTATTGGCTAAATACTCTGACCCACTAGTCTACACTGGATTTATCCGAGCAAGAACCG 951 Query 1122 GTAACGAGATCCTTAGACTTGGTGCTCATTTACTGCAGAATCTGAACAGAATCAAGGTTC 1181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 GTAACGAGATCCTTAGACTTGGTGCTCATTTACTGCAGAATCTGAACAGAATCAAGGTTC 1011 Query 1182 CGTTTCTTGTGATGCACGGCACAGCTGATACAGTTACTGATCCTAAAGGTACTCAGAAGC 1241 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1012 CGTTTCTTGTGATGCACGGCACAGCTGATACAGTTACTGATCCTAAAGGTACCCAAAAGC 1071 Query 1242 TATACAATGAGGCTTCCTCATCCGATAAGTCGATCAAGCTGTACGACGGGTTGTTACACG 1301 ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1072 TATACAACGAGGCTTCCTCGTCCGATAAGTCGATCAAGCTGTACGATGGGTTGTTACACG 1131 Query 1302 ATCTGCTCTTTGAACCAGAACGGGAAACTATAGCTGGAGTCATATTGGATTGGCTAAACC 1361 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1132 ATCTGCTCTTTGAACCAGAACGAGAAACTATCGCTGGAGTCATATTGGATTGGCTAAACC 1191 Query 1362 GGCGGGTTTAAA 1373 |||||||||||| Sbjct 1192 GGCGGGTTTAAA 1203 Score = 134 bits (72), Expect = 3e-30 Identities = 78/81 (96%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 204 TCTTTGAATTCTCTTTGTTTATGATCTGTTCAAGTAAAGGAACGGTCGTAATTGCTACTA 263 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 TCTTTGAATTCTCTTTGTTTATGATCTGTTCAAGTAAAGGAACGGTCGTATTTGCTACTG 60 Query 264 GAAGCTCATTTCCCAGATTAC 284 ||| ||||||||||||||||| Sbjct 61 GAAACTCATTTCCCAGATTAC 81 > Ahg926720 jgi|Araly1|926720|scaffold_202281.1 Length=1439 Score = 719 bits (389), Expect = 0.0 Identities = 765/944 (81%), Gaps = 35/944 (4%) Strand=Plus/Plus Query 444 CGGTGGTAGATGAGGAAGTAGCCATTAGGCG-GAAATTGGC-AATGAGACGGGTTTTGGA 501 ||||||| |||||||| || || || | || | | |||| | | || || || ||||| Sbjct 494 CGGTGGTGGATGAGGAGGTTGCTGTTCGACGTG-AGCTGGCGATTAAG-CGAGTATTGGA 551 Query 502 GGAT-AACGGTGGCGATGGAAGCTCCGTCAGAGATT-TCTCGCTATTCACGACCAAGAGA 559 |||| || || ||||||||||||||||||||||||| | ||||| |||||||| |||||| Sbjct 552 GGATGAA-GGCGGCGATGGAAGCTCCGTCAGAGATTAT-TCGCTTTTCACGACGAAGAGA 609 Query 560 GGTGACACGTTGTTCACTCAGTCATGGACTCCTGTTGACTCCGCTAAGAACAGGGGACTT 619 ||||| |||||||| || ||||||||| | ||| || ||| | || ||||||| ||| Sbjct 610 GGTGATACGTTGTTTACACAGTCATGGTCACCTCTT---TCCCCAAATCACAGGGGGCTT 666 Query 620 GTTGTTCTGCTTCATGG-TCTGAACGAACACAGTGGCAGGTATAGTGATTTTGCAAAGCA 678 |||||||||| ||||| | | ||||| || ||||||||||||||||||||||||||||| Sbjct 667 ATTGTTCTGCTACATGGAT-TAAACGAGCATAGTGGCAGGTATAGTGATTTTGCAAAGCA 725 Query 679 GCTAAATG-TAAATGGATTCAAGGTCTATGGAATAGATTGGATCGGTCATGGTGGAAGCG 737 ||| |||| ||| ||| ||||||||||||||||| || |||||||||||||| ||||| | Sbjct 726 GCTTAATGCTAA-TGGGTTCAAGGTCTATGGAATTGACTGGATCGGTCATGGCGGAAGTG 784 Query 738 ATGGACTTCATGCTTACGTTCCTTCTCTTGATTATGCTGTCGCTGATTTGAAATCGTTTA 797 ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||| Sbjct 785 ATGGACTTCATGCTTACGTTCCTTCCCTTGATTACGCTGTCGCAGATTTGAAATCATTTC 844 Query 798 TTGAGAAGGTAATTG-CGGAAAACCCGGGATTGCCCTGTTTCTGCATTGGCCACTCAACA 856 |||| |||||| || | || || || ||| | |||||||||||| |||| ||||||||| Sbjct 845 TTGAAAAGGTA-TTCACAGAGAATCCAGGACTCCCCTGTTTCTGCTTTGGACACTCAACA 903 Query 857 GGAGGAGCCATCAT-CTTAAAGGCTATGCTAGATGCAAAGATTGAAGCTCGAGTTTCAGG 915 || ||||| ||||| || || ||||||||| ||| ||||||||||| ||||||||||||| Sbjct 904 GGTGGAGCAATCATTCTCAA-GGCTATGCTGGATCCAAAGATTGAATCTCGAGTTTCAGG 962 Query 916 GATTGTGCTAACTTCACCCGCAGTTGGAGTCCAACCAACTTATCCTATCTTCGGC-GTAA 974 ||||| | |||||||| || |||||||| |||||| | |||| ||||||| | || Sbjct 963 CATTGTATTGACTTCACCAGCTGTTGGAGTTCAACCATCCCATCCAATCTTCG-CAGTTC 1021 Query 975 TTGCACCATTCCTCTCGTTCCTCATACCGAGATATCAGTTAAGTGCTGCGAAA-AAGAAA 1033 |||| ||| || | |||||||| | || || || || | ||||| || ||| |||||| Sbjct 1022 TTGCTCCAATCATGGCGTTCCTCCTGCCCAGGTACCAAATCAGTGCAGC-AAACAAGAAA 1080 Query 1034 ATAATGCCGGTTTCTCGTGACCCGGAAGCTCT-ATTGGCTAAATACTCTGACCCGCTAGT 1092 |||||||||||||||||| || | |||||| || | | ||||||||||||||| |||| Sbjct 1081 GGAATGCCGGTTTCTCGTGATCCAGCAGCTCTTATCGCC-AAATACTCTGACCCGTTAGT 1139 Query 1093 CTACACTGGATTTATCCGAGC-AAGAACCGG-TAACGAGATCCTTAGACTTGGTGCTCAT 1150 || ||| |||| ||||| | || |||||| || ||||||||||||| | |||||| Sbjct 1140 CTTCACCGGATCCATCCGGGTTAA-AACCGGATA-CGAGATCCTTAGAATCACTGCTCAC 1197 Query 1151 TTACTGCAGAATCTGAACAGAA-TCAAGGTTCCGTTTCTTGTGATGCACGGCACAG-CTG 1208 || | ||||| ||||||| || | || ||||| ||||||||||||||||| | || | | Sbjct 1198 TTGCAACAGAACCTGAACA-AAGTGAAAGTTCCTTTTCTTGTGATGCACGGTAGAGAC-G 1255 Query 1209 ATACAGTTACTGATCCTAAAGGTACTCAGAAGCTATACAATGAGGCTTCCTCATCCGATA 1268 | ||||| || |||||||| | | | ||||||| || | || |||||||| || || | Sbjct 1256 ACACAGTGACCGATCCTAACGCTTCAAAGAAGCTCTATGAGGAAGCTTCCTCGTCGGACA 1315 Query 1269 AGTCGATCAAGCTGTACGACGGGTTGTTACACGATCTGCTCTTTGAACCAGAACGGGAAA 1328 | || |||||||| ||||| ||||| || |||||||| ||||| ||||| ||||| |||| Sbjct 1316 AATCAATCAAGCTCTACGATGGGTTATTGCACGATCTTCTCTTCGAACCCGAACGAGAAA 1375 Query 1329 -CTATAGCTGGAGTCATATTGGATTGGCTAAACCGGCGGGTTTA 1371 | || ||||||| |||||| ||||||||||||| ||||||||| Sbjct 1376 TC-ATCGCTGGAGCCATATTAGATTGGCTAAACCAGCGGGTTTA 1418 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62734633515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5