BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18660.4 Length=2089 Score E Sequences producing significant alignments: (Bits) Value Ahg472088 jgi|Araly1|472088|fgenesh2_kg.1__2042__AT1G18660.4 2638 0.0 > Ahg472088 jgi|Araly1|472088|fgenesh2_kg.1__2042__AT1G18660.4 Length=1923 Score = 2638 bits (1428), Expect = 0.0 Identities = 1556/1616 (96%), Gaps = 15/1616 (1%) Strand=Plus/Plus Query 10 TGTTCCGACCGAAAAATCAGgaagaagaagaagaagaTTGACAAACAAAAAGGATTCACC 69 |||||||||| ||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 1 TGTTCCGACCCAAAAATC----AG--GAAGAAGAAGATTGGCAAACAAAAAGGATTCACC 54 Query 70 TTTAGTGACTGAG-TGAGAGAAAGAGATTGAAGGaaaaaaaaaaaaaaGGGTGAAGCTTT 128 ||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||| || Sbjct 55 TTTAGTGACTGAGCTGAGAGAGAGAGATTGAA-G---AAAAAAAAAAAGAGTGAAGC-TT 109 Query 129 GGAGAGAGGATAACCACGTAGAGGATTCTAATCCGTGGTTGCAAACGAAGGACCCAGAAT 188 |||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 110 GGAGAGAGAATAACCACGTAGAGGTTTATAATCCGTGGTTGCAAACCAAGGACCCAGAAT 169 Query 189 TTCTGGAATCTCTTGC-TTCGATCGAATCACTCTCATGTCTAACGAAGACTCTCTTCCGC 247 ||||||||| |||| | || ||||| ||||||| ||||| |||||||| ||||||||| Sbjct 170 TTCTGGAATTTCTTCCGTT-GATCG-ATCACTCAGATGTCGAACGAAGAATCTCTTCCGG 227 Query 248 CTTTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 307 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 CATTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 287 Query 308 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 347 Query 368 CATTCAAAGAGTCTCGCTTTGAAGAGGCTATTAGCAGTTATTCAAAGGCCAATTCTATTA 427 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 348 CATTCAAAGAGTCTCGCTTTGAAGAGGCAATTAGCAGTTATTCAAAGGCCAATTCTATTA 407 Query 428 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATAAGATTTGGCCAAT 487 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 408 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATTAGATTTGGCCAAT 467 Query 488 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 527 Query 548 CGATGCTTGGTGAACTTGCTCTTAAGGATGCTGATAAGCTAATGAGTCTTCAGAGCAGTT 607 |||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||| Sbjct 528 CGATGCTTGGGGAACTTGCTCTTAAGGATGCTGATAAGCTGATGAATCTTCAAAGCAGTT 587 Query 608 TAGTGAAGTCATATATTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 667 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 CAGTGAAGTCATATACTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 647 Query 668 CCCGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGGTCCTCTACGATCCA 727 | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 648 CACGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGATCCTCTCCGATCCA 707 Query 728 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAATGGCTG 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 708 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAAAGGCTG 767 Query 788 AGCGGTCTGATGATTTTGATTGCACTGTTTGCCTGAAATTGCTGTACGAACCTGCTACAA 847 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 768 AGCGGTCTGATGACTTTGATTGCACTGTTTGCCTGAAATTGCTGTATGAACCTGCTACAA 827 Query 848 CTCCATGTGGGCATACATTCTGCCGATCATGCCTCTTTCAGTCAATGGATCGCGGCAACA 907 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 828 CCCCATGTGGGCATACATTCTGCCGATCCTGCCTCTTTCAGTCAATGGATCGCGGCAACA 887 Query 908 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 967 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 947 Query 968 CACTGAATAACATCATAGAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1027 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 948 CACTGAATAACATCATACAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1007 Query 1028 AAGACACTCTGGTCCACCTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATAA 1087 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1008 AAGACACTCTGGTCCACTTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATCA 1067 Query 1088 TCCCCTGTCAGAAGTTGTCTCTTCATATATTTGAACCACGATATCGACTAATGGTGAGAA 1147 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1068 TCCCCTGTCAAAAGTTGTCTCTTCACATATTTGAACCACGATATCGACTAATGGTGAGAA 1127 Query 1148 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCGGCGACAGGTTCTC 1207 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1128 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCTGCGACAGGTTCTC 1187 Query 1208 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1247 Query 1268 TTGTCCTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1327 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 TTGTCTTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1307 Query 1328 GATATCGTGTTGCAGAGGTTGAATGGGTGAAAGATATACCACCACAAAGCGAGCAAGGGA 1387 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1308 GGTATCGTGTTGCAGAGGTTGAATGGGTGACAGATATACCACCACAAAGCGAGCAAGGGA 1367 Query 1388 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1368 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1427 Query 1448 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAAATACTTCTAAATGTTG 1507 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1428 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAATTACTTCTAAATGTTG 1487 Query 1508 AATCTATGATACCAACGCCTCAAGATCCCGAGCGCTTCAGTTTCTGGCTTGCTACACTGA 1567 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| Sbjct 1488 AATCTATGATACCAACGCCTCAAGATCCCGAACGCTTCAGTTTCTGGCTTGCCACATTGA 1547 Query 1568 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1548 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1603 Score = 468 bits (253), Expect = 8e-131 Identities = 306/330 (93%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 1668 GTTTCACCAGTCCCTTTCTTTTGATTGTTGAAACTTTGTTGTTGCAGAGAATAAAGCGCG 1727 |||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1603 GTTTTACCAGTCCTTTTCTTTTGATTATTGAAAC-TTGTTGTTGCAGAGAATAAAGCGCG 1661 Query 1728 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCAGCATGA 1787 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1662 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCATCATCA 1721 Query 1788 TGGCATTGTATTGCCGGTTAAACTACAGAGATAAACTTGGGACCTGTTCATAAGAAGGTT 1847 ||||||||||||||| || |||||||||||||||| | |||||||||||||||| Sbjct 1722 GGGCATTGTATTGCCGATTGAACTACAGAGATAAAC-T------TGTTCATAAGAAGGTT 1774 Query 1848 GAC-AAAACATTTATTCATGATTAAAGGAATACATAAGATAGAGATCCTTGTAGGATCGC 1906 ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1775 GACAAAAACA-TTATTCATGATTAAAGGAATACATAAGATAGAGATCCATGTAGGATCGC 1833 Query 1907 TGTCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGACTGTATTTTATTTAATT 1966 | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 1834 TATCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGAGTGTATTTTACTTAATT 1893 Query 1967 ACCATATTCTTCATTATGCAACTGTAGCAA 1996 |||||||||||||| ||||||||| ||||| Sbjct 1894 ACCATATTCTTCATGATGCAACTGCAGCAA 1923 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78580175435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5