BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18720.1 Length=913 Score E Sequences producing significant alignments: (Bits) Value Ahg920808 jgi|Araly1|920808|scaffold_102089.1 1048 0.0 > Ahg920808 jgi|Araly1|920808|scaffold_102089.1 Length=664 Score = 1048 bits (567), Expect = 0.0 Identities = 636/669 (95%), Gaps = 6/669 (1%) Strand=Plus/Plus Query 69 CTCTTCCTCAACGAATT-TTTTATCCATGAGTCGCATAATGGGATTGTTCGATCTCGAGA 127 ||||||||||| |||| || | ||||||||||||| |||||||||||||||||||||| Sbjct 1 CTCTTCCTCAA--AATTCATTCA-CCATGAGTCGCATGATGGGATTGTTCGATCTCGAGA 57 Query 128 AACACTTCGCCTTCTACGGTGCTTACCATAGCAATCCGATCAACATTCTAATCCACATCA 187 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 58 AACACTTCGCCTTCTACGGTGCTTACCACAGCAATCCGATCAACATTCTAATCCACATCA 117 Query 188 TCTTCGTTTGGCCAATCTTCTTCTCAGTTTTACTTCTCCTCCACTCGTCGACCCCAATTT 247 ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| Sbjct 118 TCTTCGTTTGGCCAATCGTCTTCTCAGCTTTACTTCTCCTCCACTCATCGACCCCAATTT 177 Query 248 TCGACCCCTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTTTGCGATTTA 307 |||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 178 TCGATCCTTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTCTGCGATTTA 237 Query 308 ACGTTGGGTTTATATTCGCCTTGATTTATGCTCTGTTCTATATCGGTTTGGATAAGAAAT 367 ||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| Sbjct 238 ACGTTGGGTTTATATTCACCTTGATTTATGCTCTGTTCTACATTGGTTTGGATAAAAAAT 297 Query 368 CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTTGCTG 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 298 CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTCGCTG 357 Query 428 TTCGACTAGGATCTTCTCTTGCCTTAAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA 487 |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 358 CTCGATTAGGATCTTCTCTTACCTTTAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA 417 Query 488 CCGGGCAGTTCGTTGGCCATGGAGTATTCGAGAAACGGGCACCTGCGCTGTTAGACAATT 547 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct 418 CCGGGCAGTTCGTTGGCCATGGAGTGTTCGAGAAACGAGCACCTGCGCTATTAGACAATT 477 Query 548 TACTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAATCGGTTT 607 || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 478 TAGTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAGTCAGTTT 537 Query 608 TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA 597 Query 668 TCAAGGAATATAGGGCAAAGAAGCAGAAGAAGAATAAGATCACATAAGCTTGGATTATAT 727 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 598 TCAAGGAATATAGGGCAAATAAGCAGAAGAAGAATAAGATCACATAAGTTTGGATTATAT 657 Query 728 ATAACTGAA 736 | | ||||| Sbjct 658 A-A-CTGAA 664 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33853150296 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5