BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G18720.1

Length=913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920808 jgi|Araly1|920808|scaffold_102089.1                       1048    0.0  


> Ahg920808 jgi|Araly1|920808|scaffold_102089.1
Length=664

 Score = 1048 bits (567),  Expect = 0.0
 Identities = 636/669 (95%), Gaps = 6/669 (1%)
 Strand=Plus/Plus

Query  69   CTCTTCCTCAACGAATT-TTTTATCCATGAGTCGCATAATGGGATTGTTCGATCTCGAGA  127
            |||||||||||  ||||  || | ||||||||||||| ||||||||||||||||||||||
Sbjct  1    CTCTTCCTCAA--AATTCATTCA-CCATGAGTCGCATGATGGGATTGTTCGATCTCGAGA  57

Query  128  AACACTTCGCCTTCTACGGTGCTTACCATAGCAATCCGATCAACATTCTAATCCACATCA  187
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  58   AACACTTCGCCTTCTACGGTGCTTACCACAGCAATCCGATCAACATTCTAATCCACATCA  117

Query  188  TCTTCGTTTGGCCAATCTTCTTCTCAGTTTTACTTCTCCTCCACTCGTCGACCCCAATTT  247
            ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct  118  TCTTCGTTTGGCCAATCGTCTTCTCAGCTTTACTTCTCCTCCACTCATCGACCCCAATTT  177

Query  248  TCGACCCCTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTTTGCGATTTA  307
            |||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  178  TCGATCCTTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTCTGCGATTTA  237

Query  308  ACGTTGGGTTTATATTCGCCTTGATTTATGCTCTGTTCTATATCGGTTTGGATAAGAAAT  367
            ||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||
Sbjct  238  ACGTTGGGTTTATATTCACCTTGATTTATGCTCTGTTCTACATTGGTTTGGATAAAAAAT  297

Query  368  CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTTGCTG  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  298  CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTCGCTG  357

Query  428  TTCGACTAGGATCTTCTCTTGCCTTAAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA  487
             |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  358  CTCGATTAGGATCTTCTCTTACCTTTAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA  417

Query  488  CCGGGCAGTTCGTTGGCCATGGAGTATTCGAGAAACGGGCACCTGCGCTGTTAGACAATT  547
            ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct  418  CCGGGCAGTTCGTTGGCCATGGAGTGTTCGAGAAACGAGCACCTGCGCTATTAGACAATT  477

Query  548  TACTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAATCGGTTT  607
            || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  478  TAGTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAGTCAGTTT  537

Query  608  TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA  667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  538  TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA  597

Query  668  TCAAGGAATATAGGGCAAAGAAGCAGAAGAAGAATAAGATCACATAAGCTTGGATTATAT  727
            ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct  598  TCAAGGAATATAGGGCAAATAAGCAGAAGAAGAATAAGATCACATAAGTTTGGATTATAT  657

Query  728  ATAACTGAA  736
            | | |||||
Sbjct  658  A-A-CTGAA  664



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33853150296


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5